| Year |
Citation |
Score |
| 2023 |
McElroy C, Ihms E, Yadav DK, Holmquist M, Wadwha V, Wysocki V, Gollnick P, Foster M. Solution structure, dynamics and tetrahedral assembly of Anti-TRAP, a homo-trimeric triskelion-shaped regulator of tryptophan biosynthesis in . Biorxiv : the Preprint Server For Biology. PMID 37425951 DOI: 10.1101/2023.06.29.547145 |
0.481 |
|
| 2020 |
Holmquist M, Ihms EC, Gollnick P, Wysocki VH, Foster MP. Population distributions from native mass spectrometry titrations reveal nearest-neighbor cooperativity in the ring-shaped oligomeric protein TRAP. Biochemistry. PMID 32558551 DOI: 10.1021/Acs.Biochem.0C00352 |
0.429 |
|
| 2017 |
Yoshinari S, Liu Y, Gollnick P, Ho CK. Cleavage of 3'-terminal adenosine by archaeal ATP-dependent RNA ligase. Scientific Reports. 7: 11662. PMID 28912583 DOI: 10.1038/S41598-017-11693-0 |
0.579 |
|
| 2017 |
McAdams NM, Patterson A, Gollnick P. Identification of a Residue (Glu60) in TRAP Required for Inducing Efficient Transcription Termination at the trp Attenuator Independent of Binding Tryptophan and RNA. Journal of Bacteriology. PMID 28069823 DOI: 10.1128/JB.00710-16 |
0.632 |
|
| 2016 |
Hindman R, Gollnick P. Nucleoside Triphosphate Phosphohydrolase I (NPH I) Functions as a 5' to 3' Translocase in Transcription Termination of Vaccinia Early Genes. The Journal of Biological Chemistry. PMID 27189950 DOI: 10.1074/jbc.M116.730135 |
0.435 |
|
| 2016 |
Gu H, Yoshinari S, Ghosh R, Ignatochkina AV, Gollnick PD, Murakami KS, Ho CK. Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis. Nucleic Acids Research. PMID 26896806 DOI: 10.1093/nar/gkw094 |
0.533 |
|
| 2015 |
Tate J, Boldt RL, McFadden BD, D'Costa SM, Lewandowski NM, Shatzer AN, Gollnick P, Condit RC. Biochemical analysis of the multifunctional vaccinia mRNA capping enzyme encoded by a temperature sensitive virus mutant. Virology. 487: 27-40. PMID 26496697 DOI: 10.1016/J.Virol.2015.10.011 |
0.743 |
|
| 2015 |
Eletsky A, Pulavarti SV, Beaumont V, Gollnick P, Szyperski T. Solution NMR Experiment for Measurement of (15)N-(1)H Residual Dipolar Couplings in Large Proteins and Supramolecular Complexes. Journal of the American Chemical Society. 137: 11242-5. PMID 26293598 DOI: 10.1021/Jacs.5B07010 |
0.333 |
|
| 2015 |
Tate J, Gollnick P. The role of vaccinia termination factor and cis-acting elements in vaccinia virus early gene transcription termination. Virology. 485: 179-88. PMID 26280468 DOI: 10.1016/J.Virol.2015.05.008 |
0.809 |
|
| 2015 |
Sharma S, Patnaik SK, Taggart RT, Kannisto ED, Enriquez SM, Gollnick P, Baysal BE. APOBEC3A cytidine deaminase induces RNA editing in monocytes and macrophages. Nature Communications. 6: 6881. PMID 25898173 DOI: 10.1038/Ncomms7881 |
0.788 |
|
| 2015 |
McAdams NM, Gollnick P. Characterization of TRAP-mediated regulation of the B. subtilis trp operon using in vitro transcription and transcriptional reporter fusions in vivo. Methods in Molecular Biology (Clifton, N.J.). 1259: 333-47. PMID 25579595 DOI: 10.1007/978-1-4939-2214-7_20 |
0.643 |
|
| 2014 |
Sharma S, Gollnick P. Modulating TRAP-mediated transcription termination by AT during transcription of the leader region of the Bacillus subtilis trp operon. Nucleic Acids Research. 42: 5543-55. PMID 24682818 DOI: 10.1093/Nar/Gku211 |
0.841 |
|
| 2014 |
Ihms EC, Zhou M, Zhang Y, Kleckner IR, McElroy CA, Wysocki VH, Gollnick P, Foster MP. Gene regulation by substoichiometric heterocomplex formation of undecameric TRAP and trimeric anti-TRAP. Proceedings of the National Academy of Sciences of the United States of America. 111: 3442-7. PMID 24550461 DOI: 10.1073/Pnas.1315281111 |
0.659 |
|
| 2014 |
McAdams NM, Gollnick P. The Bacillus subtilis TRAP protein can induce transcription termination in the leader region of the tryptophan biosynthetic (trp) operon independent of the trp attenuator RNA. Plos One. 9: e88097. PMID 24505391 DOI: 10.1371/Journal.Pone.0088097 |
0.699 |
|
| 2013 |
Kleckner IR, McElroy CA, Kuzmic P, Gollnick P, Foster MP. Homotropic cooperativity from the activation pathway of the allosteric ligand-responsive regulatory trp RNA-binding attenuation protein. Biochemistry. 52: 8855-65. PMID 24224873 DOI: 10.1021/Bi401364V |
0.525 |
|
| 2012 |
Bayfield OW, Chen CS, Patterson AR, Luan W, Smits C, Gollnick P, Antson AA. Trp RNA-binding attenuation protein: modifying symmetry and stability of a circular oligomer. Plos One. 7: e44309. PMID 22970197 DOI: 10.1371/journal.pone.0044309 |
0.358 |
|
| 2012 |
Kleckner IR, Gollnick P, Foster MP. Mechanisms of allosteric gene regulation by NMR quantification of microsecond-millisecond protein dynamics. Journal of Molecular Biology. 415: 372-81. PMID 22115774 DOI: 10.1016/J.Jmb.2011.11.019 |
0.482 |
|
| 2011 |
Tate J, Gollnick P. Role of forward translocation in nucleoside triphosphate phosphohydrolase I (NPH I)-mediated transcription termination of vaccinia virus early genes. The Journal of Biological Chemistry. 286: 44764-75. PMID 22069335 DOI: 10.1074/Jbc.M111.263822 |
0.801 |
|
| 2011 |
Chen CS, Smits C, Dodson GG, Shevtsov MB, Merlino N, Gollnick P, Antson AA. How to change the oligomeric state of a circular protein assembly: switch from 11-subunit to 12-subunit TRAP suggests a general mechanism. Plos One. 6: e25296. PMID 21984911 DOI: 10.1371/journal.pone.0025296 |
0.71 |
|
| 2011 |
Potter KD, Merlino NM, Jacobs T, Gollnick P. TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator. Nucleic Acids Research. 39: 2092-102. PMID 21097886 DOI: 10.1093/Nar/Gkq965 |
0.709 |
|
| 2010 |
Sachleben JR, McElroy CA, Gollnick P, Foster MP. Mechanism for pH-dependent gene regulation by amino-terminus-mediated homooligomerization of Bacillus subtilis anti-trp RNA-binding attenuation protein. Proceedings of the National Academy of Sciences of the United States of America. 107: 15385-90. PMID 20713740 DOI: 10.1073/Pnas.1004981107 |
0.575 |
|
| 2010 |
Shevtsov MB, Chen Y, Isupov MN, Leech A, Gollnick P, Antson AA. Bacillus licheniformis Anti-TRAP can assemble into two types of dodecameric particles with the same symmetry but inverted orientation of trimers. Journal of Structural Biology. 170: 127-33. PMID 20138150 DOI: 10.1016/J.Jsb.2010.01.013 |
0.643 |
|
| 2008 |
Chen Y, Gollnick P. Alanine scanning mutagenesis of anti-TRAP (AT) reveals residues involved in binding to TRAP. Journal of Molecular Biology. 377: 1529-43. PMID 18334255 DOI: 10.1016/J.Jmb.2008.02.015 |
0.68 |
|
| 2007 |
Barbolina MV, Kristoforov R, Manfredo A, Chen Y, Gollnick P. The rate of TRAP binding to RNA is crucial for transcription attenuation control of the B. subtilis trp operon. Journal of Molecular Biology. 370: 925-38. PMID 17555767 DOI: 10.1016/J.Jmb.2007.05.027 |
0.755 |
|
| 2006 |
McElroy CA, Manfredo A, Gollnick P, Foster MP. Thermodynamics of tryptophan-mediated activation of the trp RNA-binding attenuation protein. Biochemistry. 45: 7844-53. PMID 16784236 DOI: 10.1021/Bi0526074 |
0.591 |
|
| 2006 |
Payal V, Gollnick P. Substitutions of Thr30 provide mechanistic insight into tryptophan-mediated activation of TRAP binding to RNA. Nucleic Acids Research. 34: 2933-42. PMID 16738132 DOI: 10.1093/Nar/Gkl383 |
0.798 |
|
| 2005 |
Shevtsov MB, Chen Y, Gollnick P, Antson AA. Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction. Proceedings of the National Academy of Sciences of the United States of America. 102: 17600-5. PMID 16306262 DOI: 10.1073/Pnas.0508728102 |
0.713 |
|
| 2005 |
Gollnick P, Babitzke P, Antson A, Yanofsky C. Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. Annual Review of Genetics. 39: 47-68. PMID 16285852 DOI: 10.1146/Annurev.Genet.39.073003.093745 |
0.596 |
|
| 2005 |
Gollnick P, Antson A. Going for RNA repeats. Nature Structural & Molecular Biology. 12: 289-90. PMID 15809648 DOI: 10.1038/Nsmb0405-289 |
0.639 |
|
| 2005 |
Barbolina MV, Li X, Gollnick P. Bacillus subtilis TRAP binds to its RNA target by a 5' to 3' directional mechanism. Journal of Molecular Biology. 345: 667-79. PMID 15588817 DOI: 10.1016/J.Jmb.2004.10.071 |
0.599 |
|
| 2004 |
McCabe BC, Gollnick P. Cellular levels of trp RNA-binding attenuation protein in Bacillus subtilis. Journal of Bacteriology. 186: 5157-9. PMID 15262953 DOI: 10.1128/Jb.186.15.5157-5159.2004 |
0.639 |
|
| 2004 |
Shevtsov MB, Chen Y, Gollnick P, Antson AA. Anti-TRAP protein from Bacillus subtilis: crystallization and internal symmetry. Acta Crystallographica. Section D, Biological Crystallography. 60: 1311-4. PMID 15213402 DOI: 10.1107/S0907444904011199 |
0.591 |
|
| 2004 |
Fairman ME, Maroney PA, Wang W, Bowers HA, Gollnick P, Nilsen TW, Jankowsky E. Protein displacement by DExH/D "RNA helicases" without duplex unwinding. Science (New York, N.Y.). 304: 730-4. PMID 15118161 DOI: 10.1126/Science.1095596 |
0.563 |
|
| 2004 |
Snyder D, Lary J, Chen Y, Gollnick P, Cole JL. Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP. Journal of Molecular Biology. 338: 669-82. PMID 15099736 DOI: 10.1016/J.Jmb.2004.03.030 |
0.712 |
|
| 2004 |
Hopcroft NH, Manfredo A, Wendt AL, Brzozowski AM, Gollnick P, Antson AA. The interaction of RNA with TRAP: the role of triplet repeats and separating spacer nucleotides. Journal of Molecular Biology. 338: 43-53. PMID 15050822 DOI: 10.1016/J.Jmb.2004.02.038 |
0.655 |
|
| 2004 |
Szigeti R, Milescu M, Gollnick P. Regulation of the tryptophan biosynthetic genes in Bacillus halodurans: common elements but different strategies than those used by Bacillus subtilis. Journal of Bacteriology. 186: 818-28. PMID 14729709 DOI: 10.1128/Jb.186.3.818-828.2004 |
0.739 |
|
| 2004 |
Li PT, Gollnick P. Characterization of a trp RNA-binding attenuation protein (TRAP) mutant with tryptophan independent RNA binding activity. Journal of Molecular Biology. 335: 707-22. PMID 14687568 DOI: 10.1016/j.jmb.2003.11.002 |
0.614 |
|
| 2003 |
Gollnick P. TRAP-RNA interactions involved in regulating transcription attenuation of the Bacillus subtilis trp operon. Methods in Enzymology. 371: 405-18. PMID 14712718 DOI: 10.1016/S0076-6879(03)71031-3 |
0.658 |
|
| 2002 |
Flynn PF, Wendt A, Gollnick P. Influence of induced fit in the interaction of Bacillus subtilis trp RNA-binding attenuator protein and its RNA antiterminator target oligomer. Proteins. 49: 432-8. PMID 12402353 DOI: 10.1002/Prot.10243 |
0.663 |
|
| 2002 |
McElroy C, Manfredo A, Wendt A, Gollnick P, Foster M. TROSY-NMR studies of the 91kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility. Journal of Molecular Biology. 323: 463-73. PMID 12381302 DOI: 10.1016/S0022-2836(02)00940-3 |
0.603 |
|
| 2002 |
Gollnick P, Babitzke P. Transcription attenuation. Biochimica Et Biophysica Acta. 1577: 240-50. PMID 12213655 DOI: 10.1016/S0167-4781(02)00455-4 |
0.561 |
|
| 2002 |
Li PT, Gollnick P. Using hetero-11-mers composed of wild type and mutant subunits to study tryptophan binding to TRAP and its role in activating RNA binding. The Journal of Biological Chemistry. 277: 35567-73. PMID 12133840 DOI: 10.1074/jbc.M205910200 |
0.567 |
|
| 2002 |
Hopcroft NH, Wendt AL, Gollnick P, Antson AA. Specificity of TRAP-RNA interactions: crystal structures of two complexes with different RNA sequences. Acta Crystallographica. Section D, Biological Crystallography. 58: 615-21. PMID 11914485 DOI: 10.1107/S0907444902003189 |
0.653 |
|
| 2002 |
Li PT, Scott DJ, Gollnick P. Creating hetero-11-mers composed of wild-type and mutant subunits to study RNA binding to TRAP. The Journal of Biological Chemistry. 277: 11838-44. PMID 11805104 DOI: 10.1074/jbc.M110860200 |
0.606 |
|
| 2002 |
Valbuzzi A, Gollnick P, Babitzke P, Yanofsky C. The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein. The Journal of Biological Chemistry. 277: 10608-13. PMID 11786553 DOI: 10.1074/Jbc.M111813200 |
0.685 |
|
| 2001 |
Babitzke P, Gollnick P. Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structure Journal of Bacteriology. 183: 5795-5802. PMID 11566976 DOI: 10.1128/Jb.183.20.5795-5802.2001 |
0.605 |
|
| 2001 |
Elliott M, Gottlieb P, Gollnick P. Using nucleotide analogs to probe protein-RNA interactions Methods. 23: 255-263. PMID 11243838 DOI: 10.1006/Meth.2000.1136 |
0.799 |
|
| 2001 |
Elliott MB, Gottlieb PA, Gollnick P. The mechanism of RNA binding to TRAP: initiation and cooperative interactions. Rna (New York, N.Y.). 7: 85-93. PMID 11214184 DOI: 10.1017/S135583820100173X |
0.817 |
|
| 2001 |
McCormac DJ, Litz H, Wang J, Gollnick PD, Berry JO. Light-associated and Processing-dependent Protein Binding to 5′ Regions of rbcL mRNA in the Chloroplasts of a C4 Plant Journal of Biological Chemistry. 276: 3476-3483. PMID 11076953 DOI: 10.1074/jbc.M009236200 |
0.393 |
|
| 1999 |
Elliott MB, Gottlieb PA, Gollnick P. Probing the TRAP-RNA interaction with nucleoside analogs. Rna (New York, N.Y.). 5: 1277-89. PMID 10573119 DOI: 10.1017/S1355838299991057 |
0.813 |
|
| 1999 |
Chen Xp, Antson AA, Yang M, Li P, Baumann C, Dodson EJ, Dodson GG, Gollnick P. Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus. Journal of Molecular Biology. 289: 1003-16. PMID 10369778 DOI: 10.1006/Jmbi.1999.2834 |
0.618 |
|
| 1999 |
Antson AA, Dodson EJ, Dodson GG, Chen X-, Gollnick P. Molecular interactions in assembly of trp RNA-binding attenuation protein with RNA Biochemical Society Transactions. 27. DOI: 10.1042/Bst027A089B |
0.611 |
|
| 1998 |
Xirasagar S, Elliott MB, Bartolini W, Gollnick P, Gottlieb PA. RNA structure inhibits the TRAP (trp RNA-binding attenuation protein)-RNA interaction. The Journal of Biological Chemistry. 273: 27146-53. PMID 9765233 DOI: 10.1074/Jbc.273.42.27146 |
0.817 |
|
| 1997 |
Yang M, Chen Xp, Militello K, Hoffman R, Fernandez B, Baumann C, Gollnick P. Alanine-scanning mutagenesis of Bacillus subtilis trp RNA-binding attenuation protein (TRAP) reveals residues involved in tryptophan binding and RNA binding. Journal of Molecular Biology. 270: 696-710. PMID 9245598 DOI: 10.1006/Jmbi.1997.1149 |
0.584 |
|
| 1997 |
Baumann C, Xirasagar S, Gollnick P. The trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis binds to unstacked trp leader RNA Journal of Biological Chemistry. 272: 19863-19869. PMID 9242649 DOI: 10.1074/Jbc.272.32.19863 |
0.652 |
|
| 1997 |
Sundararaju B, Antson AA, Phillips RS, Demidkina TV, Barbolina MV, Gollnick P, Dodson GG, Wilson KS. The crystal structure of Citrobacter freundii tyrosine phenol-lyase complexed with 3-(4'-hydroxyphenyl)propionic acid, together with site-directed mutagenesis and kinetic analysis, demonstrates that arginine 381 is required for substrate specificity. Biochemistry. 36: 6502-10. PMID 9174368 DOI: 10.1021/Bi962917+ |
0.314 |
|
| 1996 |
Baumann C, Otridge J, Gollnick P. Kinetic and thermodynamic analysis of the interaction between TRAP (trp RNA-binding attenuation protein) of Bacillus subtilis and trp leader RNA Journal of Biological Chemistry. 271: 12269-12274. PMID 8647825 DOI: 10.1074/Jbc.271.21.12269 |
0.64 |
|
| 1996 |
Qtridgc J, Gollnick P. Analysis of the TRAP-frp leader RNA interaction Faseb Journal. 10. |
0.602 |
|
| 1995 |
Gollnick P, Baumann C, Yang M, Otridge J, Antson A. Interaction of the 11-subunit trp RNA-binding attenuation protein (TRAP) with its RNA target Nucleic Acids Symposium Series. 43-45. PMID 8643393 |
0.608 |
|
| 1995 |
Hoffman RJ, Gollnick P. The mtrB gene of Bacillus pumilus encodes a protein with sequence and functional homology to the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis Journal of Bacteriology. 177: 839-842. PMID 7836324 DOI: 10.1128/Jb.177.3.839-842.1995 |
0.627 |
|
| 1995 |
Antson AA, Otridge J, Brzozowski AM, Dodson EJ, Dodson GG, Wilson KS, Smith TM, Yang M, Kurecki T, Gollnick P. The structure of trp RNA-binding attenuation protein. Nature. 374: 693-700. PMID 7715723 DOI: 10.1038/374693A0 |
0.535 |
|
| 1995 |
Yang M, De Saizieu A, Van Loon APGM, Gollnick P. Translation of trpG in Bacillus subtilis is regulated by the trp RNA- binding attenuation protein (TRAP) Journal of Bacteriology. 177: 4272-4278. PMID 7543470 |
0.571 |
|
| 1994 |
Gollnick P. Regulation of the Bacillus subtilis trp operon by an RNA-binding protein Molecular Microbiology. 11: 991-997. PMID 8022289 DOI: 10.1111/j.1365-2958.1994.tb00377.x |
0.633 |
|
| 1994 |
Antson AA, Brzozowski AM, Dodson EJ, Dauter Z, Wilson KS, Kurecki T, Otridge J, Gollnick P. 11-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis. Journal of Molecular Biology. 244: 1-5. PMID 7525975 DOI: 10.1006/Jmbi.1994.1698 |
0.443 |
|
| 1993 |
Otridge J, Gollnick P. MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan-dependent manner Proceedings of the National Academy of Sciences of the United States of America. 90: 128-132. PMID 8419914 DOI: 10.1073/pnas.90.1.128 |
0.584 |
|
| 1993 |
Antson AA, Demidkina TV, Gollnick P, Dauter Z, von Tersch RL, Long J, Berezhnoy SN, Phillips RS, Harutyunyan EH, Wilson KS. Three-dimensional structure of tyrosine phenol-lyase. Biochemistry. 32: 4195-206. PMID 7916622 DOI: 10.1021/Bi00067A006 |
0.396 |
|
| 1992 |
Babitzke P, Gollnick P, Yanofsky C. The mtrAB operon of Bacillus subtilis encodes GTP cyclohydrolase I (MtrA), an enzyme involved in folic acid biosynthesis, and MtrB, a regulator of tryptophan biosynthesis. Journal of Bacteriology. 174: 2059-64. PMID 1551827 DOI: 10.1128/Jb.174.7.2059-2064.1992 |
0.341 |
|
| 1990 |
Gollnick P, Yanofsky C. tRNA(Trp) translation of leader peptide codon 12 and other factors that regulate expression of the tryptophanase operon Journal of Bacteriology. 172: 3100-3107. PMID 2345136 DOI: 10.1128/Jb.172.6.3100-3107.1990 |
0.372 |
|
| 1990 |
Phillips RS, Gollnick P. The environments ofTrp-248 and Trp-330 in tryptophan indole-lyase from Escherichia coli Febs Letters. 268: 213-216. PMID 2200710 DOI: 10.1016/0014-5793(90)81011-C |
0.309 |
|
| 1990 |
Gollnick P, Ishino S, Kuroda MI, Henner DJ, Yanofsky C. The mtr locus is a two-gene operon required for transcription attenuation in the trp operon of Bacillus subtilis Proceedings of the National Academy of Sciences of the United States of America. 87: 8726-8730. PMID 2123343 DOI: 10.1073/Pnas.87.22.8726 |
0.544 |
|
| 1986 |
Gollnick P, Hardin CC, Horowitz J. Fluorine-19 nuclear magnetic resonance study of codon-anticodon interaction in 5-fluorouracil-substituted E. coli transfer RNAs. Nucleic Acids Research. 14: 4659-72. PMID 3520488 DOI: 10.1093/Nar/14.11.4659 |
0.322 |
|
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