| Year |
Citation |
Score |
| 2023 |
Uvizl M, Puechmaille SJ, Power S, Pippel M, Carthy S, Haerty W, Myers EW, Teeling EC, Huang Z. Comparative genome microsynteny illuminates the fast evolution of nuclear mitochondrial segments (NUMTs) in mammals. Molecular Biology and Evolution. PMID 38124445 DOI: 10.1093/molbev/msad278 |
0.313 |
|
| 2023 |
Mehta TK, Man A, Ciezarek A, Ranson K, Penman D, Di-Palma F, Haerty W. Chromatin accessibility in gill tissue identifies candidate genes and loci associated with aquaculture relevant traits in tilapia. Genomics. 115: 110633. PMID 37121445 DOI: 10.1016/j.ygeno.2023.110633 |
0.399 |
|
| 2022 |
Etherington GJ, Ciezarek A, Shaw R, Michaux J, Croose E, Haerty W, Di Palma F. Extensive genome introgression between domestic ferret and European polecat during population recovery in Great Britain. The Journal of Heredity. PMID 35932226 DOI: 10.1093/jhered/esac038 |
0.307 |
|
| 2021 |
Gleeson J, Leger A, Prawer YDJ, Lane TA, Harrison PJ, Haerty W, Clark MB. Accurate expression quantification from nanopore direct RNA sequencing with NanoCount. Nucleic Acids Research. PMID 34850115 DOI: 10.1093/nar/gkab1129 |
0.32 |
|
| 2021 |
Bergero R, Ellis P, Haerty W, Larcombe L, Macaulay I, Mehta T, Mogensen M, Murray D, Nash W, Neale MJ, O'Connor R, Ottolini C, Peel N, Ramsey L, Skinner B, et al. Meiosis and beyond - understanding the mechanistic and evolutionary processes shaping the germline genome. Biological Reviews of the Cambridge Philosophical Society. PMID 33615674 DOI: 10.1111/brv.12680 |
0.314 |
|
| 2021 |
Mehta TK, Koch C, Nash W, Knaack SA, Sudhakar P, Olbei M, Bastkowski S, Penso-Dolfin L, Korcsmaros T, Haerty W, Roy S, Di-Palma F. Evolution of regulatory networks associated with traits under selection in cichlids. Genome Biology. 22: 25. PMID 33419455 DOI: 10.1186/s13059-020-02208-8 |
0.446 |
|
| 2020 |
Demeter A, Romero-Mulero MC, Csabai L, Ölbei M, Sudhakar P, Haerty W, Korcsmáros T. ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins. Scientific Reports. 10: 10940. PMID 32616830 DOI: 10.1038/S41598-020-67780-2 |
0.344 |
|
| 2020 |
Penso-Dolfin L, Man A, Mehta T, Haerty W, Di Palma F. Analysis of structural variants in four African cichlids highlights an association with developmental and immune related genes. Bmc Evolutionary Biology. 20: 69. PMID 32564776 DOI: 10.1186/S12862-020-01629-0 |
0.393 |
|
| 2020 |
Baggs E, Monroe JG, Thanki AS, O'Grady R, Schudoma C, Haerty W, Krasileva KV. Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Co-evolved Components of Plant Immunity and Drought Response. The Plant Cell. PMID 32409319 DOI: 10.1105/Tpc.19.00903 |
0.392 |
|
| 2020 |
Etherington GJ, Heavens D, Baker D, Lister A, McNelly R, Garcia G, Clavijo B, Macaulay I, Haerty W, Di Palma F. Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal. Gigascience. 9. PMID 32396200 DOI: 10.1093/Gigascience/Giaa045 |
0.358 |
|
| 2020 |
Penso-Dolfin L, Haerty W, Hindle A, Di Palma F. microRNA profiling in the Weddell seal suggests novel regulatory mechanisms contributing to diving adaptation. Bmc Genomics. 21: 303. PMID 32293246 DOI: 10.1186/S12864-020-6675-0 |
0.385 |
|
| 2019 |
Clark MB, Wrzesinski T, Garcia AB, Hall NAL, Kleinman JE, Hyde T, Weinberger DR, Harrison PJ, Haerty W, Tunbridge EM. Long-read sequencing reveals the complex splicing profile of the psychiatric risk gene CACNA1C in human brain. Molecular Psychiatry. PMID 31695164 DOI: 10.1038/S41380-019-0583-1 |
0.405 |
|
| 2019 |
Akay A, Jordan D, Navarro IC, Wrzesinski T, Ponting CP, Miska EA, Haerty W. Identification of functional long non-coding RNAs in C. elegans. Bmc Biology. 17: 14. PMID 30777050 DOI: 10.1186/S12915-019-0635-7 |
0.317 |
|
| 2019 |
Clifford H, Dulneva A, Ponting CP, Haerty W, Becker EBE. A gene expression signature in developing Purkinje cells predicts autism and intellectual disability co-morbidity status. Scientific Reports. 9: 485. PMID 30679692 DOI: 10.1038/S41598-018-37284-1 |
0.411 |
|
| 2019 |
Thanki A, Soranzo N, Haerty W, Davey R. Aequatus.js: a plugin to visualise gene trees in Galaxy F1000research. 8. DOI: 10.7490/F1000Research.1117044.1 |
0.386 |
|
| 2019 |
Hall N, Clark M, Wrzesinski T, Haerty W, Tunbridge E. P.1.03 Characterisation of the splice isoform profile of the calcium channel gene CACNA1C in human brain European Neuropsychopharmacology. 29: S634. DOI: 10.1016/J.Euroneuro.2019.01.006 |
0.309 |
|
| 2018 |
Chen J, Swofford R, Johnson J, Cummings BB, Rogel N, Lindblad-Toh K, Haerty W, di Palma F, Regev A. A quantitative framework for characterizing the evolutionary history of mammalian gene expression. Genome Research. PMID 30552105 DOI: 10.1101/Gr.237636.118 |
0.482 |
|
| 2018 |
Penso-Dolfin L, Moxon S, Haerty W, Di Palma F. The evolutionary dynamics of microRNAs in domestic mammals. Scientific Reports. 8: 17050. PMID 30451897 DOI: 10.1038/S41598-018-34243-8 |
0.333 |
|
| 2018 |
Thanki AS, Soranzo N, Herrero J, Haerty W, Davey RP. Aequatus: An open-source homology browser. Gigascience. PMID 30395211 DOI: 10.1093/Gigascience/Giy128 |
0.526 |
|
| 2018 |
Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, et al. Adaptation and conservation insights from the koala genome. Nature Genetics. PMID 29967444 DOI: 10.1038/S41588-018-0153-5 |
0.467 |
|
| 2018 |
Thanki AS, Soranzo N, Haerty W, Davey RP. GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees. Gigascience. PMID 29425291 DOI: 10.1093/Gigascience/Giy005 |
0.521 |
|
| 2018 |
Thanki AS, Soranzo N, Haerty W, Herrero J, Davey RP. Characterising and visualising gene families with GeneSeqToFamily and Aequatus F1000research. 7. DOI: 10.7490/F1000Research.1116090.1 |
0.384 |
|
| 2018 |
Soranzo N, Thanki AS, Haerty W, Davey RP. GeneSeqToFamily: a Galaxy workflow to find gene families based on the Ensembl Compara GeneTrees pipeline F1000research. 7. DOI: 10.7490/F1000Research.1115785.1 |
0.354 |
|
| 2017 |
Heman-Ackah SM, Manzano R, Hoozemans JJM, Scheper W, Flynn R, Haerty W, Cowley SA, Bassett AR, Wood MJA. Alpha-Synuclein Induces the Unfolded Protein Response in Parkinson's Disease SNCA Triplication iPSC-Derived Neurons. Human Molecular Genetics. PMID 28973645 DOI: 10.1093/Hmg/Ddx331 |
0.311 |
|
| 2017 |
Tamiru M, Natsume S, Takagi H, White B, Yaegashi H, Shimizu M, Yoshida K, Uemura A, Oikawa K, Abe A, Urasaki N, Matsumura H, Babil P, Yamanaka S, Matsumoto R, ... ... Haerty W, et al. Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. Bmc Biology. 15: 86. PMID 28927400 DOI: 10.1186/S12915-017-0419-X |
0.441 |
|
| 2017 |
Gallone G, Haerty W, Disanto G, Ramagopalan SV, Ponting CP, Berlanga-Taylor AJ. Identification of genetic variants affecting vitamin D receptor binding and associations with autoimmune disease. Human Molecular Genetics. PMID 28335003 DOI: 10.1093/Hmg/Ddx092 |
0.31 |
|
| 2017 |
Sandor C, Honti F, Haerty W, Szewczyk-Krolikowski K, Tomlinson P, Evetts S, Millin S, Keane T, McCarthy SA, Durbin R, Talbot K, Hu M, Webber C, Ponting CP, Wade-Martins R. Whole-exome sequencing of 228 patients with sporadic Parkinson's disease. Scientific Reports. 7: 41188. PMID 28117402 DOI: 10.1038/Srep41188 |
0.332 |
|
| 2017 |
Thanki AS, Soranzo N, Haerty W, Davey RP. Discovery and visualisation of homologous genes using Galaxy F1000research. 6. DOI: 10.7490/F1000Research.1114431.1 |
0.404 |
|
| 2017 |
Thanki A, Soranzo N, Haerty W, Davey RP. Discovery and visualisation of homologous genes and gene families using Galaxy F1000research. 6. DOI: 10.7490/F1000Research.1113616.1 |
0.436 |
|
| 2017 |
Haerty W, Ponting C. Identification of functional non-coding transcribed sequences in Eukaryotes species Neuropeptides. 65: 141. DOI: 10.1016/J.Npep.2017.02.043 |
0.377 |
|
| 2016 |
Macaulay IC, Teng MJ, Haerty W, Kumar P, Ponting CP, Voet T. Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq. Nature Protocols. 11: 2081-2103. PMID 27685099 DOI: 10.1038/Nprot.2016.138 |
0.359 |
|
| 2016 |
Patthey C, Clifford H, Haerty W, Ponting CP, Shimeld SM, Begbie J. Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick. Neural Development. 11: 3. PMID 26819088 DOI: 10.1186/S13064-016-0057-Y |
0.306 |
|
| 2015 |
Jagadeeshan S, Haerty W, Moglinicka M, Ahuja A, De Vito S, Singh RS. Evolutionary Consequences of Male Driven Sexual Selection and Sex-Biased Fitness Modifications in Drosophila melanogaster and Members of the simulans Clade. International Journal of Evolutionary Biology. 2015: 756269. PMID 26421208 DOI: 10.1155/2015/756269 |
0.619 |
|
| 2015 |
Wehrspaun CC, Haerty W, Ponting CP. Microglia recapitulate a hematopoietic master regulator network in the aging human frontal cortex. Neurobiology of Aging. 36: 2443.e9-2443.e20. PMID 26002684 DOI: 10.1016/J.Neurobiolaging.2015.04.008 |
0.329 |
|
| 2015 |
Macaulay IC, Haerty W, Kumar P, Li YI, Hu TX, Teng MJ, Goolam M, Saurat N, Coupland P, Shirley LM, Smith M, Van der Aa N, Banerjee R, Ellis PD, Quail MA, et al. G&T-seq: parallel sequencing of single-cell genomes and transcriptomes. Nature Methods. 12: 519-22. PMID 25915121 DOI: 10.1038/Nmeth.3370 |
0.377 |
|
| 2015 |
Haerty W, Ponting CP. Unexpected selection to retain high GC content and splicing enhancers within exons of multiexonic lncRNA loci. Rna (New York, N.Y.). 21: 333-46. PMID 25589248 DOI: 10.1261/Rna.047324.114 |
0.39 |
|
| 2015 |
Mercer TR, Clark MB, Andersen SB, Brunck ME, Haerty W, Crawford J, Taft RJ, Nielsen LK, Dinger ME, Mattick JS. Genome-wide discovery of human splicing branchpoints. Genome Research. 25: 290-303. PMID 25561518 DOI: 10.1101/Gr.182899.114 |
0.44 |
|
| 2015 |
Li YI, Sanchez-Pulido L, Haerty W, Ponting CP. RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts. Genome Research. 25: 1-13. PMID 25524026 DOI: 10.1101/Gr.181990.114 |
0.382 |
|
| 2014 |
Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, ... ... Haerty W, et al. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 513: 375-81. PMID 25186727 DOI: 10.1038/Nature13726 |
0.456 |
|
| 2014 |
Haerty W, Ponting CP. No gene in the genome makes sense except in the light of evolution. Annual Review of Genomics and Human Genetics. 15: 71-92. PMID 24773316 DOI: 10.1146/Annurev-Genom-090413-025621 |
0.434 |
|
| 2014 |
Lenz C, Haerty W, Golding GB. Increased substitution rates surrounding low-complexity regions within primate proteins. Genome Biology and Evolution. 6: 655-65. PMID 24572016 DOI: 10.1093/Gbe/Evu042 |
0.354 |
|
| 2013 |
Haerty W, Ponting CP. Mutations within lncRNAs are effectively selected against in fruitfly but not in human. Genome Biology. 14: R49. PMID 23710818 DOI: 10.1186/Gb-2013-14-5-R49 |
0.439 |
|
| 2013 |
Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, ... ... Haerty W, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027 |
0.517 |
|
| 2013 |
Li YI, Kong L, Ponting CP, Haerty W. Rapid evolution of Beta-keratin genes contribute to phenotypic differences that distinguish turtles and birds from other reptiles. Genome Biology and Evolution. 5: 923-33. PMID 23576313 DOI: 10.1093/Gbe/Evt060 |
0.461 |
|
| 2013 |
Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, ... ... Haerty W, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28 |
0.564 |
|
| 2012 |
Young RS, Marques AC, Tibbit C, Haerty W, Bassett AR, Liu JL, Ponting CP. Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome. Genome Biology and Evolution. 4: 427-42. PMID 22403033 DOI: 10.1093/Gbe/Evs020 |
0.52 |
|
| 2011 |
Jagadeeshan S, Haerty W, Singh RS. Is speciation accompanied by rapid evolution? Insights from comparing reproductive and nonreproductive transcriptomes in Drosophila. International Journal of Evolutionary Biology. 2011: 595121. PMID 21869936 DOI: 10.4061/2011/595121 |
0.675 |
|
| 2011 |
Maclean AM, Haerty W, Golding GB, Finan TM. The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti. Microbiology (Reading, England). 157: 2522-33. PMID 21700663 DOI: 10.1099/Mic.0.050542-0 |
0.324 |
|
| 2011 |
Haerty W, Golding GB. Increased polymorphism near low-complexity sequences across the genomes of Plasmodium falciparum isolates. Genome Biology and Evolution. 3: 539-50. PMID 21602572 DOI: 10.1093/Gbe/Evr045 |
0.417 |
|
| 2010 |
Haerty W, Golding GB. Genome-wide evidence for selection acting on single amino acid repeats. Genome Research. 20: 755-60. PMID 20056893 DOI: 10.1101/Gr.101246.109 |
0.433 |
|
| 2009 |
Artieri CG, Haerty W, Singh RS. Ontogeny and phylogeny: molecular signatures of selection, constraint, and temporal pleiotropy in the development of Drosophila. Bmc Biology. 7: 42. PMID 19622136 DOI: 10.1186/1741-7007-7-42 |
0.766 |
|
| 2009 |
Haerty W, Golding B. Similar selective factors affect both between-gene and between-exon divergence in Drosophila. Molecular Biology and Evolution. 26: 859-66. PMID 19150804 DOI: 10.1093/Molbev/Msp006 |
0.692 |
|
| 2008 |
Haerty W, Artieri C, Khezri N, Singh RS, Gupta BP. Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution. Bmc Genomics. 9: 399. PMID 18752680 DOI: 10.1186/1471-2164-9-399 |
0.788 |
|
| 2008 |
Artieri CG, Haerty W, Gupta BP, Singh RS. Sexual selection and maintenance of sex: evidence from comparisons of rates of genomic accumulation of mutations and divergence of sex-related genes in sexual and hermaphroditic species of Caenorhabditis. Molecular Biology and Evolution. 25: 972-9. PMID 18281268 DOI: 10.1093/Molbev/Msn046 |
0.755 |
|
| 2007 |
Haerty W, Jagadeeshan S, Kulathinal RJ, Wong A, Ravi Ram K, Sirot LK, Levesque L, Artieri CG, Wolfner MF, Civetta A, Singh RS. Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila. Genetics. 177: 1321-35. PMID 18039869 DOI: 10.1534/Genetics.107.078865 |
0.755 |
|
| 2007 |
Artieri CG, Haerty W, Singh RS. Association between levels of coding sequence divergence and gene misregulation in Drosophila male hybrids. Journal of Molecular Evolution. 65: 697-704. PMID 18026889 DOI: 10.1007/S00239-007-9048-2 |
0.785 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Haerty W, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.715 |
|
| 2007 |
Haerty W, Gentilhomme E, Secondi J. Female preference for a male sexual trait uncorrelated with male body size in the Palmate newt (Triturus helveticus) Behaviour. 144: 797-814. DOI: 10.1163/156853907781476445 |
0.314 |
|
| 2006 |
Haerty W, Singh RS. Gene regulation divergence is a major contributor to the evolution of Dobzhansky-Muller incompatibilities between species of Drosophila. Molecular Biology and Evolution. 23: 1707-14. PMID 16757655 DOI: 10.1093/Molbev/Msl033 |
0.671 |
|
| 2005 |
Haerty W, Lesbats M, Capy P. Pre-reproductive isolation as a consequence of allopatric differentiation between populations of Drosophila melanogaster. Molecular Ecology. 14: 3801-7. PMID 16202097 DOI: 10.1111/J.1365-294X.2005.02688.X |
0.605 |
|
| 2005 |
Secondi J, Haerty W, Lodé T. Female attraction to conspecific chemical cues in the palmate newt Triturus helveticus Ethology. 111: 726-735. DOI: 10.1111/J.1439-0310.2005.01096.X |
0.321 |
|
| 2003 |
Haerty W, Gibert P, Capy P, Moreteau B, David JR. Microspatial structure of Drosophila melanogaster populations in Brazzaville: evidence of natural selection acting on morphometrical traits. Heredity. 91: 440-7. PMID 14576736 DOI: 10.1038/Sj.Hdy.6800305 |
0.668 |
|
| 2002 |
Haerty W, Jallon JM, Rouault J, Bazin C, Capy P. Reproductive isolation in natural populations of Drosophila melanogaster from Brazzaville (Congo). Genetica. 116: 215-24. PMID 12555780 DOI: 10.1007/978-94-010-0265-3_7 |
0.569 |
|
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