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Shy Shoham - Publications

Affiliations: 
Technion - Israel Institute of Technology, Haifa, Haifa District, Israel 
Area:
Biomedical optics; Neural engineering
Website:
http://www.bm.technion.ac.il/people/staff_view/47/

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Boutte RW, Merlin S, Yona G, Griffiths B, Angelucci A, Kahn I, Shoham S, Blair S. Utah optrode array customization using stereotactic brain atlases and 3-D CAD modeling for optogenetic neocortical interrogation in small rodents and nonhuman primates. Neurophotonics. 4: 041502. PMID 28721358 DOI: 10.1117/1.NPh.4.4.041502  0.44
2016 Meitav N, Ribak EN, Shoham S. Point spread function estimation from projected speckle illumination. Light, Science & Applications. 5: e16048. PMID 30167151 DOI: 10.1038/lsa.2016.48  0.44
2016 Naor O, Krupa S, Shoham S. Ultrasonic neuromodulation. Journal of Neural Engineering. 13: 031003. PMID 27153566 DOI: 10.1088/1741-2560/13/3/031003  0.88
2016 Yona G, Meitav N, Kahn I, Shoham S. Realistic Numerical and Analytical Modeling of Light Scattering in Brain Tissue for Optogenetic Applications(1,2,3). Eneuro. 3. PMID 26866055 DOI: 10.1523/ENEURO.0059-15.2015  0.44
2016 Bar-Noam AS, Farah N, Shoham S. Correction-free remotely scanned two-photon in vivo mouse retinal imaging Light: Science and Applications. 5. DOI: 10.1038/lsa.2016.7  0.88
2015 Farah N, Levinsky A, Brosh I, Kahn I, Shoham S. Holographic fiber bundle system for patterned optogenetic activation of large-scale neuronal networks. Neurophotonics. 2: 045002. PMID 26793741 DOI: 10.1117/1.NPh.2.4.045002  0.44
2015 Pavone FS, Hillman E, Leblond F, Shoham S. Introduction to the optics and the brain 2015 feature issue. Biomedical Optics Express. 6: 4992-3. PMID 26713211 DOI: 10.1364/BOE.6.004992  0.88
2015 Kneipp M, Turner J, Estrada H, Rebling J, Shoham S, Razansky D. Effects of the murine skull in optoacoustic brain microscopy. Journal of Biophotonics. 9999. PMID 25919801 DOI: 10.1002/jbio.201400152  0.88
2015 Mayblum T, Schejter A, Dana H, Shoham S. New insights and system designs for temporally focused multiphoton optogenetics Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9329. DOI: 10.1117/12.2078678  0.88
2015 Shoham S, Reutsky-Gefen I, Schejter A, Marom A, Dana H. Photonic interfacing with natural and bioengineered large-scale neuronal networks International Ieee/Embs Conference On Neural Engineering, Ner. 2015: 876-877. DOI: 10.1109/NER.2015.7146764  0.88
2015 Marom A, Mahto SK, Shor E, Tenenbaum-Katan J, Sznitman J, Shoham S. Microfluidic Chip for Site-Specific Neuropharmacological Treatment and Activity Probing of 3D Neuronal "Optonet" Cultures Advanced Healthcare Materials. DOI: 10.1002/adhm.201400643  0.88
2014 Dana H, Marom A, Paluch S, Dvorkin R, Brosh I, Shoham S. Hybrid multiphoton volumetric functional imaging of large-scale bioengineered neuronal networks. Nature Communications. 5: 3997. PMID 24898000 DOI: 10.1038/ncomms4997  0.88
2014 Tankus A, Fried I, Shoham S. Cognitive-motor brain-machine interfaces. Journal of Physiology, Paris. 108: 38-44. PMID 23774120 DOI: 10.1016/j.jphysparis.2013.05.005  0.88
2014 Adesnik H, Waller Prof. L, Shoham S. Optics on the brain Optics and Photonics News. 25: 42-49. DOI: 10.1364/OPN.25.4.000042  0.88
2014 Schejter A, Farah N, Shoham S. Two-photon in vivo imaging of retinal microstructures Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8948. DOI: 10.1117/12.2039375  0.88
2014 Plaksin M, Shoham S, Kimmel E. Intramembrane cavitation as a predictive bio-piezoelectric mechanism for ultrasonic brain stimulation Physical Review X. 4. DOI: 10.1103/PhysRevX.4.011004  0.88
2013 Shaked NT, Shoham S, Tromberg BJ, Gannot I. Special section guest editorial: optical imaging, sensing, and light interactions in cells and tissues. Journal of Biomedical Optics. 18: 111401. PMID 24296952 DOI: 10.1117/1.JBO.18.11.111401  0.88
2013 Farah N, Zoubi A, Matar S, Golan L, Marom A, Butson CR, Brosh I, Shoham S. Holographically patterned activation using photo-absorber induced neural-thermal stimulation. Journal of Neural Engineering. 10: 056004. PMID 23902876 DOI: 10.1088/1741-2560/10/5/056004  0.88
2013 Dana H, Kruger N, Ellman A, Shoham S. Line temporal focusing characteristics in transparent and scattering media. Optics Express. 21: 5677-87. PMID 23482141 DOI: 10.1364/OE.21.005677  0.88
2013 Reutsky-Gefen I, Golan L, Farah N, Schejter A, Tsur L, Brosh I, Shoham S. Holographic optogenetic stimulation of patterned neuronal activity for vision restoration. Nature Communications. 4: 1509. PMID 23443537 DOI: 10.1038/ncomms2500  0.88
2013 Sela G, Dana H, Shoham S. Ultra-deep penetration of temporally-focused two-photon excitation Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8588. DOI: 10.1117/12.2005402  0.88
2013 Sela G, Razansky D, Shoham S. Multimodal optoacoustic and multiphoton fluorescence microscopy Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8581. DOI: 10.1117/12.2004815  0.88
2013 Paluch S, Dana H, Elbaz R, Shoham S. Computational de-scattering for enabling high rate deep imaging of neural activity traces: Simulation study International Ieee/Embs Conference On Neural Engineering, Ner. 1537-1540. DOI: 10.1109/NER.2013.6696239  0.88
2012 Tankus A, Fried I, Shoham S. Sparse decoding of multiple spike trains for brain-machine interfaces. Journal of Neural Engineering. 9: 054001. PMID 22954906 DOI: 10.1088/1741-2560/9/5/054001  0.88
2012 Tankus A, Fried I, Shoham S. Structured neuronal encoding and decoding of human speech features. Nature Communications. 3: 1015. PMID 22910361 DOI: 10.1038/ncomms1995  0.88
2012 Civillico EF, Shoham S, O'Connor DH, Sarkisov DV, Wang SS. Preparing, handling, and applying caged compound solutions for acousto-optical deflector-based patterned uncaging with ultraviolet light. Cold Spring Harbor Protocols. 2012. PMID 22854575 DOI: 10.1101/pdb.prot070656  0.88
2012 Civillico EF, Shoham S, O'Connor DH, Sarkisov DV, Wang SS. Construction, alignment, and implementation of an acousto-optical deflector-based system for patterned uncaging with ultraviolet light. Cold Spring Harbor Protocols. 2012. PMID 22854574 DOI: 10.1101/pdb.prot070649  0.88
2012 Civillico EF, Shoham S, O'Connor DH, Sarkisov DV, Wang SS. Acousto-optical deflector-based patterned ultraviolet uncaging of neurotransmitter for the study of neuronal integration. Cold Spring Harbor Protocols. 2012. PMID 22854573 DOI: 10.1101/pdb.top070631  0.88
2012 Dana H, Shoham S. Remotely scanned multiphoton temporal focusing by axial grism scanning. Optics Letters. 37: 2913-5. PMID 22825176 DOI: 10.1364/OL.37.002913  0.88
2012 Ma R, Söntges S, Shoham S, Ntziachristos V, Razansky D. Fast scanning coaxial optoacoustic microscopy. Biomedical Optics Express. 3: 1724-31. PMID 22808441 DOI: 10.1364/BOE.3.001724  0.88
2012 Szameit A, Shechtman Y, Osherovich E, Bullkich E, Sidorenko P, Dana H, Steiner S, Kley EB, Gazit S, Cohen-Hyams T, Shoham S, Zibulevsky M, Yavneh I, Eldar YC, Cohen O, et al. Sparsity-based single-shot subwavelength coherent diffractive imaging. Nature Materials. 11: 455-9. PMID 22466747 DOI: 10.1038/nmat3289  0.88
2012 Naor O, Hertzberg Y, Zemel E, Kimmel E, Shoham S. Towards multifocal ultrasonic neural stimulation II: design considerations for an acoustic retinal prosthesis. Journal of Neural Engineering. 9: 026006. PMID 22326949 DOI: 10.1088/1741-2560/9/2/026006  0.88
2012 Mishne A, Shoham S, Yahav E. Typestate-based semantic code search over partial programs Proceedings of the Conference On Object-Oriented Programming Systems, Languages, and Applications, Oopsla. 997-1016. DOI: 10.1145/2384616.2384689  0.01
2012 Dana H, Marom A, Kruger N, Ellman A, Shoham S. Rapid volumetric temporal focusing multiphoton microscopy of neural activity: Theory, image processing, and experimental realization Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8226. DOI: 10.1117/12.908844  0.88
2012 Shechtman Y, Szameit A, Bullkich E, Cohen O, Segev M, Osherovich E, Yavneh I, Zibulevsky M, Eldar YC, Dana H, Shoham S. Sparsity-based single-shot sub-wavelength coherent diffractive imaging 2012 Ieee 27th Convention of Electrical and Electronics Engineers in Israel, Ieeei 2012. DOI: 10.1109/EEEI.2012.6376969  0.88
2012 Shoham S, Grumberg O. Multi-valued model checking games Journal of Computer and System Sciences. 78: 414-429. DOI: 10.1016/j.jcss.2011.05.003  0.01
2012 Shechtman Y, Dana H, Shoham S, Eldar YC, Cohen O, Segev M. Tracking sparse movement from faurier intensity measurements Frontiers in Optics, Fio 2012 0.88
2012 Kimmel E, Krasovitski B, Plaksin M, Assa M, Geva A, Shoham S. On the interaction between acoustic pressure waves and the living cell 19th International Congress On Sound and Vibration 2012, Icsv 2012. 2: 1069-1080.  0.88
2012 Vizel Y, Grumberg O, Shoham S. Lazy abstraction and SAT-based reachability in hardware model checking 2012 Formal Methods in Computer-Aided Design, Fmcad 2012. 173-181.  0.01
2011 Matar S, Golan L, Shoham S. Reduction of two-photon holographic speckle using shift-averaging. Optics Express. 19: 25891-9. PMID 22274177  0.88
2011 Dana H, Shoham S. Numerical evaluation of temporal focusing characteristics in transparent and scattering media. Optics Express. 19: 4937-48. PMID 21445129 DOI: 10.1364/OE.19.004937  0.88
2011 Krasovitski B, Frenkel V, Shoham S, Kimmel E. Intramembrane cavitation as a unifying mechanism for ultrasound-induced bioeffects. Proceedings of the National Academy of Sciences of the United States of America. 108: 3258-63. PMID 21300891 DOI: 10.1073/pnas.1015771108  0.88
2010 Krumin M, Reutsky I, Shoham S. Correlation-based analysis and generation of multiple spike trains using hawkes models with an exogenous input. Frontiers in Computational Neuroscience. 4: 147. PMID 21151360 DOI: 10.3389/fncom.2010.00147  0.88
2010 Shoham S. Optogenetics meets optical wavefront shaping. Nature Methods. 7: 798-9. PMID 20885441 DOI: 10.1038/nmeth1010-798  0.88
2010 Hertzberg Y, Naor O, Volovick A, Shoham S. Towards multifocal ultrasonic neural stimulation: pattern generation algorithms. Journal of Neural Engineering. 7: 056002. PMID 20720281 DOI: 10.1088/1741-2560/7/5/056002  0.88
2010 Shoham S, Deisseroth K. Special issue on optical neural engineering: advances in optical stimulation technology. Journal of Neural Engineering. 7: 040201. PMID 20644243 DOI: 10.1088/1741-2560/7/4/040201  0.88
2010 Krumin M, Shoham S. Multivariate autoregressive modeling and granger causality analysis of multiple spike trains. Computational Intelligence and Neuroscience. 752428. PMID 20454705 DOI: 10.1155/2010/752428  0.88
2010 Krumin M, Shimron A, Shoham S. Correlation-distortion based identification of Linear-Nonlinear-Poisson models. Journal of Computational Neuroscience. 29: 301-8. PMID 19757006 DOI: 10.1007/s10827-009-0184-0  0.88
2009 Golan L, Reutsky I, Farah N, Shoham S. Design and characteristics of holographic neural photo-stimulation systems. Journal of Neural Engineering. 6: 066004. PMID 19837999 DOI: 10.1088/1741-2560/6/6/066004  0.88
2009 Yaeli S, Binyamin E, Shoham S. Form-function relations in cone-tipped stimulating microelectrodes. Frontiers in Neuroengineering. 2: 13. PMID 19680467 DOI: 10.3389/neuro.16.013.2009  0.88
2009 Sarig-Nadir O, Livnat N, Zajdman R, Shoham S, Seliktar D. Laser photoablation of guidance microchannels into hydrogels directs cell growth in three dimensions. Biophysical Journal. 96: 4743-52. PMID 19486697 DOI: 10.1016/j.bpj.2009.03.019  0.88
2009 Krumin M, Shoham S. Generation of spike trains with controlled auto- and cross-correlation functions. Neural Computation. 21: 1642-64. PMID 19191596 DOI: 10.1162/neco.2009.08-08-847  0.88
2009 Golan L, Shoham S. Speckle elimination using shift-averaging in high-rate holographic projection. Optics Express. 17: 1330-9. PMID 19188961 DOI: 10.1364/OE.17.001330  0.88
2009 Krumin M, Shimron A, Shoham S. New methods for simulation and analysis of correlated spike-trains 2009 4th International Ieee/Embs Conference On Neural Engineering, Ner '09. 746-749. DOI: 10.1109/NER.2009.5109404  0.88
2009 Livnat N, Sarig-Nadir O, Seliktar D, Shoham S. Three-dimensional guidance of DRG neurite outgrowth using multi-photon photo-ablation 2009 4th International Ieee/Embs Conference On Neural Engineering, Ner '09. 116-119. DOI: 10.1109/NER.2009.5109248  0.88
2009 Matar S, Golan L, Farah N, Reutsky I, Shoham S. Holographic photo-stimulation for dynamic control of neuronal population activity 2009 4th International Ieee/Embs Conference On Neural Engineering, Ner '09. 84-87. DOI: 10.1109/NER.2009.5109240  0.88
2009 Bobrowski O, Meir R, Shoham S, Eldar YC. A neural network implementing optimal state estimation based on dynamic spike train decoding Advances in Neural Information Processing Systems 20 - Proceedings of the 2007 Conference 0.88
2008 Krumin M, Shoham S. Characterization of input-output relations in single neurons using spatiotemporal photo-stimulation Ifmbe Proceedings. 20: 378-379. DOI: 10.1007/978-3-540-69367-3-101  0.88
2007 Farah N, Reutsky I, Shoham S. Patterned optical activation of retinal ganglion cells. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2007: 6368-70. PMID 18003478 DOI: 10.1109/IEMBS.2007.4353812  0.88
2007 O?an R, Zhu L, Shoham S, Tsien JZ. Subspace projection approaches to classification and visualization of neural network-level encoding patterns. Plos One. 2: e404. PMID 17476326 DOI: 10.1371/journal.pone.0000404  0.88
2007 Livnat N, Sarig-Nadir O, Zajdman R, Seliktar D, Shoham S. A hydrogel-based nerve regeneration conduit with sub-micrometer feature control Proceedings of the 3rd International Ieee Embs Conference On Neural Engineering. 101-103. DOI: 10.1109/CNE.2007.369622  0.88
2007 Reutsky I, Ben-Shimol D, Farah N, Levenberg S, Shoham S. Patterned optical activation of Channelrhodopsin II expressing retinal ganglion cells Proceedings of the 3rd International Ieee Embs Conference On Neural Engineering. 50-52. DOI: 10.1109/CNE.2007.369609  0.88
2006 Shoham S, O'Connor DH, Segev R. How silent is the brain: is there a "dark matter" problem in neuroscience? Journal of Comparative Physiology. a, Neuroethology, Sensory, Neural, and Behavioral Physiology. 192: 777-84. PMID 16550391 DOI: 10.1007/s00359-006-0117-6  0.88
2006 Guillory KS, Shoham S, Normann RA. Discrete stimulus estimation from neural responses in the turtle retina. Vision Research. 46: 1876-85. PMID 16442582 DOI: 10.1016/j.visres.2005.12.001  0.88
2005 Shoham S, O'Connor DH, Sarkisov DV, Wang SS. Rapid neurotransmitter uncaging in spatially defined patterns. Nature Methods. 2: 837-43. PMID 16278654 DOI: 10.1038/nmeth793  0.88
2005 Shoham S, Paninski LM, Fellows MR, Hatsopoulos NG, Donoghue JP, Normann RA. Statistical encoding model for a primary motor cortical brain-machine interface. Ieee Transactions On Bio-Medical Engineering. 52: 1312-22. PMID 16041995 DOI: 10.1109/TBME.2005.847542  0.88
2005 Lin L, Osan R, Shoham S, Jin W, Zuo W, Tsien JZ. Identification of network-level coding units for real-time representation of episodic experiences in the hippocampus. Proceedings of the National Academy of Sciences of the United States of America. 102: 6125-30. PMID 15833817 DOI: 10.1073/pnas.0408233102  0.88
2004 Stein RB, Aoyagi Y, Weber DJ, Shoham S, Normann RA. Encoding mechanisms for sensory neurons studied with a multielectrode array in the cat dorsal root ganglion. Canadian Journal of Physiology and Pharmacology. 82: 757-68. PMID 15523533 DOI: 10.1139/y04-075  0.88
2004 Paninski L, Shoham S, Fellows MR, Hatsopoulos NG, Donoghue JP. Superlinear population encoding of dynamic hand trajectory in primary motor cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 8551-61. PMID 15456829 DOI: 10.1523/JNEUROSCI.0919-04.2004  0.88
2004 Stein RB, Weber DJ, Aoyagi Y, Prochazka A, Wagenaar JB, Shoham S, Normann RA. Coding of position by simultaneously recorded sensory neurones in the cat dorsal root ganglion. The Journal of Physiology. 560: 883-96. PMID 15331686 DOI: 10.1113/jphysiol.2004.068668  0.88
2004 Reed CL, Shoham S, Halgren E. Neural substrates of tactile object recognition: an fMRI study. Human Brain Mapping. 21: 236-46. PMID 15038005 DOI: 10.1002/hbm.10162  0.88
2004 Wang SSH, Shoham S, O'Connor DH. Multiphoton optical approaches to understanding brain function Microscopy and Microanalysis. 10: 1464-1465. DOI: 10.1017/S1431927604880413  0.88
2003 Shoham S, Fellows MR, Normann RA. Robust, automatic spike sorting using mixtures of multivariate t-distributions. Journal of Neuroscience Methods. 127: 111-22. PMID 12906941 DOI: 10.1016/S0165-0270(03)00120-1  0.88
2002 Shoham S. Robust clustering by deterministic agglomeration EM of mixtures of multivariate t-distributions Pattern Recognition. 35: 1127-1142. DOI: 10.1016/S0031-3203(01)00080-2  0.88
2002 Gao Y, Black MJ, Bienenstock E, Shoham S, Donoghue JP. Probabilistic inference of hand motion from neural activity in motor cortex Advances in Neural Information Processing Systems 0.88
2001 Shoham S, Halgren E, Maynard EM, Normann RA. Motor-cortical activity in tetraplegics. Nature. 413: 793. PMID 11677592 DOI: 10.1038/35101651  0.88
1999 Shoham S, Maynard EM. Decoding filter for motor cortical (MI) neurons Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 1: 413.  0.88
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