Year |
Citation |
Score |
2019 |
Saba J, Chua XY, Mishanina TV, Nayak D, Windgassen TA, Mooney RA, Landick R. The elemental mechanism of transcriptional pausing. Elife. 8. PMID 30618376 DOI: 10.7554/Elife.40981 |
0.465 |
|
2018 |
Saba J, Chua XY, Mishanina TV, Nayak D, Windgassen TA, Mooney RA, Landick R. Author response: The elemental mechanism of transcriptional pausing Elife. DOI: 10.7554/Elife.40981.025 |
0.332 |
|
2017 |
Mishanina TV, Palo MZ, Nayak D, Mooney RA, Landick R. Trigger loop of RNA polymerase is a positional, not acid-base, catalyst for both transcription and proofreading. Proceedings of the National Academy of Sciences of the United States of America. PMID 28607053 DOI: 10.1073/Pnas.1702383114 |
0.43 |
|
2017 |
Karam JA, Parikh RY, Nayak D, Rosenkranz D, Gangaraju VK. Co-chaperone Hsp70/Hsp90 organizing protein (Hop) is Required for Transposon Silencing and piRNA Biogenesis. The Journal of Biological Chemistry. PMID 28193840 DOI: 10.1074/Jbc.C117.777730 |
0.347 |
|
2015 |
Bae B, Nayak D, Ray A, Mustaev A, Landick R, Darst SA. CBR antimicrobials inhibit RNA polymerase via at least two bridge-helix cap-mediated effects on nucleotide addition. Proceedings of the National Academy of Sciences of the United States of America. PMID 26195788 DOI: 10.1073/Pnas.1502368112 |
0.439 |
|
2014 |
Windgassen TA, Mooney RA, Nayak D, Palangat M, Zhang J, Landick R. Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase. Nucleic Acids Research. 42: 12707-21. PMID 25336618 DOI: 10.1093/Nar/Gku997 |
0.414 |
|
2014 |
Larson MH, Mooney RA, Peters JM, Windgassen T, Nayak D, Gross CA, Block SM, Greenleaf WJ, Landick R, Weissman JS. A pause sequence enriched at translation start sites drives transcription dynamics in vivo. Science (New York, N.Y.). 344: 1042-7. PMID 24789973 DOI: 10.1126/Science.1251871 |
0.421 |
|
2013 |
Nayak D, Voss M, Windgassen T, Mooney RA, Landick R. Cys-pair reporters detect a constrained trigger loop in a paused RNA polymerase. Molecular Cell. 50: 882-93. PMID 23769674 DOI: 10.1016/J.Molcel.2013.05.015 |
0.467 |
|
2009 |
Nayak D, Guo Q, Sousa R. A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerases. The Journal of Biological Chemistry. 284: 13641-7. PMID 19307179 DOI: 10.1074/Jbc.M900718200 |
0.59 |
|
2008 |
Nayak D, Siller S, Guo Q, Sousa R. Mechanism of T7 RNAP pausing and termination at the T7 concatemer junction: a local change in transcription bubble structure drives a large change in transcription complex architecture. Journal of Molecular Biology. 376: 541-53. PMID 18166198 DOI: 10.1016/J.Jmb.2007.11.090 |
0.595 |
|
2007 |
Nayak D, Guo Q, Sousa R. Functional architecture of T7 RNA polymerase transcription complexes. Journal of Molecular Biology. 371: 490-500. PMID 17580086 DOI: 10.1016/J.Jmb.2007.05.070 |
0.615 |
|
2005 |
Guo Q, Nayak D, Brieba LG, Sousa R. Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release. Journal of Molecular Biology. 353: 256-70. PMID 16169559 DOI: 10.1016/J.Jmb.2005.08.016 |
0.604 |
|
1994 |
Biswas SK, Nayak DP. Mutational analysis of the conserved motifs of influenza A virus polymerase basic protein 1 Journal of Virology. 68: 1819-1826. PMID 8107244 |
0.348 |
|
1983 |
Sivasubramanian N, Nayak DP. Defective interfering influenza RNAs of polymerase 3 gene contain single as well as multiple internal deletions Virology. 124: 232-237. PMID 6823747 DOI: 10.1016/0042-6822(83)90340-9 |
0.337 |
|
1983 |
Chanda P, Chambers TM, Nayak DP. In vitro transcription of defective interfering particles of influenza virus produces polyadenylic acid-containing complementary RNAs Journal of Virology. 45: 55-61. PMID 6185696 |
0.351 |
|
1979 |
Davis AR, Nayak DP. Sequence relationships among defective interfering influenza viral RNAs Proceedings of the National Academy of Sciences of the United States of America. 76: 3092-3096. PMID 290988 |
0.334 |
|
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