| Year |
Citation |
Score |
| 2023 |
Herrera-Uribe J, Lim KS, Byrne KA, Daharsh L, Liu H, Corbett RJ, Marco G, Schroyen M, Koltes JE, Loving CL, Tuggle CK. Integrative profiling of gene expression and chromatin accessibility elucidates specific transcriptional networks in porcine neutrophils. Frontiers in Genetics. 14: 1107462. PMID 37287538 DOI: 10.3389/fgene.2023.1107462 |
0.32 |
|
| 2021 |
Dong Q, Dunkelberger J, Lim KS, Lunney JK, Tuggle CK, Rowland RRR, Dekkers JCM. Associations of Natural Variation in the CD163 and Other Candidate Genes on Host Response of Nursery Pigs to PRRSV Infection. Journal of Animal Science. PMID 34570877 DOI: 10.1093/jas/skab274 |
0.302 |
|
| 2020 |
Herrera-Uribe J, Liu H, Byrne KA, Bond ZF, Loving CL, Tuggle CK. Changes in H3K27ac at Gene Regulatory Regions in Porcine Alveolar Macrophages Following LPS or PolyIC Exposure. Frontiers in Genetics. 11: 817. PMID 32973863 DOI: 10.3389/Fgene.2020.00817 |
0.385 |
|
| 2020 |
Warr A, Affara N, Aken B, Beiki H, Bickhart DM, Billis K, Chow W, Eory L, Finlayson HA, Flicek P, Girón CG, Griffin DK, Hall R, Hannum G, Hourlier T, ... ... Tuggle CK, et al. An improved pig reference genome sequence to enable pig genetics and genomics research. Gigascience. 9. PMID 32543654 DOI: 10.1093/Gigascience/Giaa051 |
0.324 |
|
| 2020 |
Boettcher AN, Cino-Ozuna AG, Solanki Y, Wiarda JE, Putz E, Owens JL, Crane SA, Ahrens AP, Loving CL, Cunnick JE, Rowland RRR, Charley SE, Dekkers JCM, Tuggle CK. CD3ε Cells in Pigs With Severe Combined Immunodeficiency Due to Defects in . Frontiers in Immunology. 11: 510. PMID 32296428 DOI: 10.3389/Fimmu.2020.00510 |
0.375 |
|
| 2019 |
Lim KS, Dong Q, Moll P, Vitkovska J, Wiktorin G, Bannister S, Daujotyte D, Tuggle CK, Lunney JK, Plastow GS, Dekkers JCM. The effects of a globin blocker on the resolution of 3'mRNA sequencing data in porcine blood. Bmc Genomics. 20: 741. PMID 31615396 DOI: 10.1186/S12864-019-6122-2 |
0.332 |
|
| 2019 |
Annamalai T, Lu Z, Jung K, Langel SN, Tuggle CK, Dekkers JCM, Waide EH, Kandasamy S, Saif LJ. Infectivity of GII.4 human norovirus does not differ between T-B-NK Severe Combined Immunodeficiency (SCID) and non-SCID gnotobiotic pigs, implicating the role of NK cells in mediation of human norovirus infection. Virus Research. PMID 31054932 DOI: 10.1016/J.Virusres.2019.05.002 |
0.329 |
|
| 2019 |
Li Q, Burrough ER, Gabler NK, Gould SA, Loving CL, Tuggle CK, Sahin O, Patience JF. 159 Impact of dietary fiber and carbohydrases on intestinal gene transcription in enterotoxigenic E. coli challenged pigs Journal of Animal Science. 97: 90-91. DOI: 10.1093/Jas/Skz122.164 |
0.314 |
|
| 2018 |
Boettcher AN, Loving CL, Cunnick JE, Tuggle CK. Development of Severe Combined Immunodeficient (SCID) Pig Models for Translational Cancer Modeling: Future Insights on How Humanized SCID Pigs Can Improve Preclinical Cancer Research. Frontiers in Oncology. 8: 559. PMID 30560086 DOI: 10.3389/Fonc.2018.00559 |
0.335 |
|
| 2018 |
Giuffra E, Tuggle CK. Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap. Annual Review of Animal Biosciences. PMID 30427726 DOI: 10.1146/Annurev-Animal-020518-114913 |
0.301 |
|
| 2018 |
Waide EH, Tuggle CK, Serão NVL, Schroyen M, Hess A, Rowland RRR, Lunney JK, Plastow G, Dekkers JCM. Genomic prediction of piglet response to infection with one of two porcine reproductive and respiratory syndrome virus isolates. Genetics, Selection, Evolution : Gse. 50: 3. PMID 29390955 DOI: 10.1186/S12711-018-0371-4 |
0.3 |
|
| 2018 |
Dong Q, Lunney J, Nguyen YT, Tuggle CK, Rowland B, Reecy JM, Dekkers JCM. The Effect of PRRSV Vaccination and WUR Genotype on the Gene Expression Profile in Blood of Nursery Pigs Following Co-infection with PRRSV and PCV2b Animal Industry Report. 664: 70. DOI: 10.31274/Ans_Air-180814-358 |
0.389 |
|
| 2017 |
Liu H, Smith TPL, Nonneman DJ, Dekkers JCM, Tuggle CK. A high-quality annotated transcriptome of swine peripheral blood. Bmc Genomics. 18: 479. PMID 28646867 DOI: 10.1186/S12864-017-3863-7 |
0.34 |
|
| 2017 |
Kommadath A, Bao H, Choi I, Reecy JM, Koltes JE, Fritz-Waters E, Eisley CJ, Grant JR, Rowland RR, Tuggle CK, Dekkers JC, Lunney JK, Guan LL, Stothard P, Plastow GS. Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection. Scientific Reports. 7: 46203. PMID 28393889 DOI: 10.1038/Srep46203 |
0.462 |
|
| 2017 |
Waide EH, Tuggle CK, Serão NV, Schroyen M, Hess A, Rowland RR, Lunney JK, Plastow G, Dekkers JC. Genomewide association of piglet responses to infection with one of two porcine reproductive and respiratory syndrome virus isolates. Journal of Animal Science. 95: 16-38. PMID 28177360 DOI: 10.2527/Jas.2016.0874 |
0.382 |
|
| 2016 |
Rajao DS, Loving CL, Waide EH, Gauger PC, Dekkers JC, Tuggle CK, Vincent AL. Pigs with Severe Combined Immunodeficiency Are Impaired in Controlling Influenza A Virus Infection. Journal of Innate Immunity. PMID 27988511 DOI: 10.1159/000451007 |
0.332 |
|
| 2016 |
Powell EJ, Cunnick JE, Knetter SM, Loving CL, Waide EH, Dekkers JC, Tuggle CK. NK cells are intrinsically functional in pigs with Severe Combined Immunodeficiency (SCID) caused by spontaneous mutations in the Artemis gene. Veterinary Immunology and Immunopathology. 175: 1-6. PMID 27269786 DOI: 10.1016/J.Vetimm.2016.04.008 |
0.767 |
|
| 2016 |
Grubbs JK, Dekkers JC, Huff-Lonergan E, Tuggle CK, Lonergan SM. Identification of potential serum biomarkers to predict feed efficiency in young pigs. Journal of Animal Science. 94: 1482-92. PMID 27136007 DOI: 10.2527/Jas.2015-9692 |
0.302 |
|
| 2016 |
Schroyen M, Eisley C, Koltes JE, Fritz-Waters E, Choi I, Plastow GS, Guan L, Stothard P, Bao H, Kommadath A, Reecy JM, Lunney JK, Rowland RR, Dekkers JC, Tuggle CK. Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL. Bmc Genomics. 17: 196. PMID 26951612 DOI: 10.1186/S12864-016-2547-Z |
0.386 |
|
| 2016 |
Liu H, Nguyen YT, Nettleton D, Dekkers JC, Tuggle CK. Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake. Bmc Genomics. 17: 73. PMID 26801403 DOI: 10.1186/S12864-016-2395-X |
0.332 |
|
| 2016 |
Bao H, Kommadath A, Choi I, Lunney JK, Reecy JM, Fritz-Waters E, Eisley CJ, Tuggle CK, Koltes JE, Rowland RRR, Dekkers JCM, Guan LL, Stothard P, Plastow G. P6034 Associations between cis-expression quantitative trait loci markers and host response to Porcine reproductive and respiratory syndrome virus infection Journal of Animal Science. 94: 165-166. DOI: 10.2527/Jas2016.94Supplement4165A |
0.327 |
|
| 2016 |
Powell EJ, Cunnick JE, Knetter SM, Loving CL, Waide EH, Dekkers JCM, Tuggle CK. NK cells are intrinsically functional in pigs with Severe Combined Immunodeficiency (SCID) caused by spontaneous mutations in the Artemis gene Veterinary Immunology and Immunopathology. 175: 1-6. DOI: 10.1016/j.vetimm.2016.04.008 |
0.768 |
|
| 2015 |
Nguyen Y, Nettleton D, Liu H, Tuggle CK. Detecting Differentially Expressed Genes with RNA-seq Data Using Backward Selection to Account for the Effects of Relevant Covariates. Journal of Agricultural, Biological, and Environmental Statistics. 20: 577-597. PMID 26660449 DOI: 10.1007/S13253-015-0226-1 |
0.414 |
|
| 2015 |
Waide EH, Dekkers JC, Ross JW, Rowland RR, Wyatt CR, Ewen CL, Evans AB, Thekkoot DM, Boddicker NJ, Serão NV, Ellinwood NM, Tuggle CK. Not All SCID Pigs Are Created Equally: Two Independent Mutations in the Artemis Gene Cause SCID in Pigs. Journal of Immunology (Baltimore, Md. : 1950). 195: 3171-9. PMID 26320255 DOI: 10.4049/Jimmunol.1501132 |
0.348 |
|
| 2015 |
Bao H, Kommadath A, Liang G, Sun X, Arantes AS, Tuggle CK, Bearson SM, Plastow GS, Stothard P, Guan LL. Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine. Scientific Reports. 5: 12620. PMID 26227241 DOI: 10.1038/Srep12620 |
0.31 |
|
| 2015 |
Schroyen M, Steibel JP, Koltes JE, Choi I, Raney NE, Eisley C, Fritz-Waters E, Reecy JM, Dekkers JC, Rowland RR, Lunney JK, Ernst CW, Tuggle CK. Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection. Bmc Genomics. 16: 516. PMID 26159815 DOI: 10.1186/S12864-015-1741-8 |
0.499 |
|
| 2015 |
Mpetile Z, Young JM, Gabler NK, Dekkers JCM, Tuggle CK. Assessing peripheral blood cell profile of Yorkshire pigs divergently selected for residual feed intake Journal of Animal Science. 93: 892-899. PMID 26020867 DOI: 10.2527/Jas.2014-8132 |
0.316 |
|
| 2015 |
Pilcher CM, Jones CK, Schroyen M, Severin AJ, Patience JF, Tuggle CK, Koltes JE. Transcript profiles in longissimus dorsi muscle and subcutaneous adipose tissue: a comparison of pigs with different postweaning growth rates. Journal of Animal Science. 93: 2134-43. PMID 26020309 DOI: 10.2527/Jas.2014-8593 |
0.425 |
|
| 2015 |
Koltes JE, Fritz-Waters E, Eisley CJ, Choi I, Bao H, Kommadath A, Serão NV, Boddicker NJ, Abrams SM, Schroyen M, Loyd H, Tuggle CK, Plastow GS, Guan L, Stothard P, et al. Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection. Bmc Genomics. 16: 412. PMID 26016888 DOI: 10.1186/S12864-015-1635-9 |
0.367 |
|
| 2015 |
Mathew DJ, Newsom EM, Guyton JM, Tuggle CK, Geisert RD, Lucy MC. Activation of the transcription factor nuclear factor-kappa B in uterine luminal epithelial cells by interleukin 1 Beta 2: a novel interleukin 1 expressed by the elongating pig conceptus. Biology of Reproduction. 92: 107. PMID 25761593 DOI: 10.1095/Biolreprod.114.126128 |
0.372 |
|
| 2015 |
Schroyen M, Tuggle CK. Current transcriptomics in pig immunity research. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 26: 1-20. PMID 25398484 DOI: 10.1007/S00335-014-9549-4 |
0.342 |
|
| 2015 |
Knetter SM, Bearson SM, Huang TH, Kurkiewicz D, Schroyen M, Nettleton D, Berman D, Cohen V, Lunney JK, Ramer-Tait AE, Wannemuehler MJ, Tuggle CK. Salmonella enterica serovar Typhimurium-infected pigs with different shedding levels exhibit distinct clinical, peripheral cytokine and transcriptomic immune response phenotypes. Innate Immunity. 21: 227-41. PMID 24632525 DOI: 10.1177/1753425914525812 |
0.805 |
|
| 2015 |
Liu H, Nguyen YT, Nettleton DS, Dekkers JCM, Tuggle CK. Differentially Expressed Genes in Blood from Young Pigs between Two Swine Lines Divergently Selected for Feed Efficiency: Potential Biomarkers for Improving Feed Efficiency Animal Industry Report. 661: 77. DOI: 10.31274/Ans_Air-180814-1331 |
0.381 |
|
| 2014 |
Choi I, Bao H, Kommadath A, Hosseini A, Sun X, Meng Y, Stothard P, Plastow GS, Tuggle CK, Reecy JM, Fritz-Waters E, Abrams SM, Lunney JK, Guan le L. Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples. Bmc Genomics. 15: 954. PMID 25374277 DOI: 10.1186/1471-2164-15-954 |
0.397 |
|
| 2014 |
Kommadath A, Bao H, Arantes AS, Plastow GS, Tuggle CK, Bearson SM, Guan le L, Stothard P. Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding. Bmc Genomics. 15: 452. PMID 24912583 DOI: 10.1186/1471-2164-15-452 |
0.495 |
|
| 2014 |
Bao H, Kommadath A, Plastow GS, Tuggle CK, Guan le L, Stothard P. MicroRNA buffering and altered variance of gene expression in response to Salmonella infection. Plos One. 9: e94352. PMID 24718561 DOI: 10.1371/Journal.Pone.0094352 |
0.309 |
|
| 2014 |
Kich JD, Uthe JJ, Benavides MV, Cantão ME, Zanella R, Tuggle CK, Bearson SM. TLR4 single nucleotide polymorphisms (SNPs) associated with Salmonella shedding in pigs. Journal of Applied Genetics. 55: 267-71. PMID 24566961 DOI: 10.1007/S13353-014-0199-8 |
0.772 |
|
| 2014 |
Gu T, Zhu MJ, Schroyen M, Qu L, Nettleton D, Kuhar D, Lunney JK, Ross JW, Zhao SH, Tuggle CK. Endometrial gene expression profiling in pregnant Meishan and Yorkshire pigs on day 12 of gestation. Bmc Genomics. 15: 156. PMID 24564230 DOI: 10.1186/1471-2164-15-156 |
0.448 |
|
| 2014 |
Knetter SM, Tuggle CK, Wannemuehler MJ, Ramer-Tait AE. Organic barn dust extract exposure impairs porcine macrophage function in vitro: implications for respiratory health. Veterinary Immunology and Immunopathology. 157: 20-30. PMID 24275039 DOI: 10.1016/J.Vetimm.2013.10.019 |
0.771 |
|
| 2014 |
Eisley CJ, Fritz-Waters ER, Choi I, Koltes JE, Boddicker N, Reecy JM, Lunney J, Carpenter SL, Tuggle CK, Liu P, Dekkers JCM. Analysis of Gene Expression in a Region Associated with Host Response to Porcine Reproductive and Respiratory Syndrome Virus Challenge Animal Industry Report. 660: 84. DOI: 10.31274/Ans_Air-180814-1203 |
0.394 |
|
| 2013 |
Kapetanovic R, Fairbairn L, Downing A, Beraldi D, Sester DP, Freeman TC, Tuggle CK, Archibald AL, Hume DA. The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide. Bmc Genomics. 14: 581. PMID 23984833 DOI: 10.1186/1471-2164-14-581 |
0.44 |
|
| 2013 |
Dawson HD, Loveland JE, Pascal G, Gilbert JG, Uenishi H, Mann KM, Sang Y, Zhang J, Carvalho-Silva D, Hunt T, Hardy M, Hu Z, Zhao SH, Anselmo A, Shinkai H, ... ... Tuggle CK, et al. Structural and functional annotation of the porcine immunome. Bmc Genomics. 14: 332. PMID 23676093 DOI: 10.1186/1471-2164-14-332 |
0.482 |
|
| 2013 |
Badaoui B, Tuggle CK, Hu Z, Reecy JM, Ait-Ali T, Anselmo A, Botti S. Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approach. Bmc Genomics. 14: 220. PMID 23552196 DOI: 10.1186/1471-2164-14-220 |
0.417 |
|
| 2013 |
Bearson SM, Allen HK, Bearson BL, Looft T, Brunelle BW, Kich JD, Tuggle CK, Bayles DO, Alt D, Levine UY, Stanton TB. Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the natural porcine host. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 16: 330-40. PMID 23535116 DOI: 10.1016/J.Meegid.2013.03.022 |
0.329 |
|
| 2012 |
Arceo ME, Ernst CW, Lunney JK, Choi I, Raney NE, Huang T, Tuggle CK, Rowland RR, Steibel JP. Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression. Frontiers in Genetics. 3: 321. PMID 23335940 DOI: 10.3389/Fgene.2012.00321 |
0.463 |
|
| 2012 |
Freeman TC, Ivens A, Baillie JK, Beraldi D, Barnett MW, Dorward D, Downing A, Fairbairn L, Kapetanovic R, Raza S, Tomoiu A, Alberio R, Wu C, Su AI, Summers KM, ... Tuggle CK, et al. A gene expression atlas of the domestic pig. Bmc Biology. 10: 90. PMID 23153189 DOI: 10.1186/1741-7007-10-90 |
0.386 |
|
| 2012 |
Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, et al. Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 491: 393-8. PMID 23151582 DOI: 10.1038/Nature11622 |
0.397 |
|
| 2012 |
Wilke VL, Nettleton D, Wymore MJ, Gallup JM, Demirkale CY, Ackermann MR, Tuggle CK, Ramer-Tait AE, Wannemuehler MJ, Jergens AE. Gene expression in intestinal mucosal biopsy specimens obtained from dogs with chronic enteropathy. American Journal of Veterinary Research. 73: 1219-29. PMID 22849683 DOI: 10.2460/Ajvr.73.8.1219 |
0.442 |
|
| 2012 |
Kapetanovic R, Fairbairn L, Beraldi D, Sester DP, Archibald AL, Tuggle CK, Hume DA. Pig bone marrow-derived macrophages resemble human macrophages in their response to bacterial lipopolysaccharide. Journal of Immunology (Baltimore, Md. : 1950). 188: 3382-94. PMID 22393154 DOI: 10.4049/Jimmunol.1102649 |
0.368 |
|
| 2012 |
Wright EC, Yang C, Tuggle CK, Ross JW. Heat Stress during Pig Oocyte In Vitro Maturation Impacts Embryonic Development and Gene Expression Animal Industry Report. 658: 71. DOI: 10.31274/Ans_Air-180814-1373 |
0.346 |
|
| 2011 |
Huang TH, Uthe JJ, Bearson SM, Demirkale CY, Nettleton D, Knetter S, Christian C, Ramer-Tait AE, Wannemuehler MJ, Tuggle CK. Distinct peripheral blood RNA responses to Salmonella in pigs differing in Salmonella shedding levels: intersection of IFNG, TLR and miRNA pathways. Plos One. 6: e28768. PMID 22174891 DOI: 10.1371/Journal.Pone.0028768 |
0.799 |
|
| 2011 |
Uthe JJ, Qu L, Couture O, Bearson SM, O'Connor AM, McKean JD, Torres YR, Dekkers JC, Nettleton D, Tuggle CK. Use of bioinformatic SNP predictions in differentially expressed genes to find SNPs associated with Salmonella colonization in swine. Journal of Animal Breeding and Genetics = Zeitschrift FüR TierzüChtung Und ZüChtungsbiologie. 128: 354-65. PMID 21906181 DOI: 10.1111/J.1439-0388.2011.00935.X |
0.798 |
|
| 2011 |
Uthe JJ, Bearson SM, Qu L, Dekkers JC, Nettleton D, Rodriguez Torres Y, O'Connor AM, McKean JD, Tuggle CK. Integrating comparative expression profiling data and association of SNPs with Salmonella shedding for improved food safety and porcine disease resistance. Animal Genetics. 42: 521-34. PMID 21906103 DOI: 10.1111/J.1365-2052.2010.02171.X |
0.788 |
|
| 2011 |
Engrav LH, Tuggle CK, Kerr KF, Zhu KQ, Numhom S, Couture OP, Beyer RP, Hocking AM, Carrougher GJ, Ramos ML, Klein MB, Gibran NS. Functional genomics unique to week 20 post wounding in the deep cone/fat dome of the Duroc/Yorkshire porcine model of fibroproliferative scarring. Plos One. 6: e19024. PMID 21533106 DOI: 10.1371/Journal.Pone.0019024 |
0.763 |
|
| 2010 |
Tuggle CK, Bearson SM, Uthe JJ, Huang TH, Couture OP, Wang YF, Kuhar D, Lunney JK, Honavar V. Methods for transcriptomic analyses of the porcine host immune response: application to Salmonella infection using microarrays. Veterinary Immunology and Immunopathology. 138: 280-91. PMID 21036404 DOI: 10.1016/J.Vetimm.2010.10.006 |
0.792 |
|
| 2010 |
Ciraci C, Tuggle CK, Wannemuehler MJ, Nettleton D, Lamont SJ. Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin. Bmc Genomics. 11: 545. PMID 20929591 DOI: 10.1186/1471-2164-11-545 |
0.447 |
|
| 2010 |
Coulombe Y, Lemieux M, Moreau J, Aubin J, Joksimovic M, Bérubé-Simard FA, Tabariès S, Boucherat O, Guillou F, Larochelle C, Tuggle CK, Jeannotte L. Multiple promoters and alternative splicing: Hoxa5 transcriptional complexity in the mouse embryo. Plos One. 5: e10600. PMID 20485555 DOI: 10.1371/Journal.Pone.0010600 |
0.762 |
|
| 2010 |
Towfic F, VanderPlas S, Oliver CA, Couture O, Tuggle CK, West Greenlee MH, Honavar V. Detection of gene orthology from gene co-expression and protein interaction networks. Bmc Bioinformatics. 11: S7. PMID 20438654 DOI: 10.1186/1471-2105-11-S3-S7 |
0.756 |
|
| 2010 |
Barb CR, Hausman GJ, Rekaya R, Lents CA, Lkhagvadorj S, Qu L, Cai W, Couture OP, Anderson LL, Dekkers JC, Tuggle CK. Gene expression in hypothalamus, liver, and adipose tissues and food intake response to melanocortin-4 receptor agonist in pigs expressing melanocortin-4 receptor mutations. Physiological Genomics. 41: 254-68. PMID 20215418 DOI: 10.1152/Physiolgenomics.00006.2010 |
0.804 |
|
| 2010 |
Lkhagvadorj S, Qu L, Cai W, Couture OP, Barb CR, Hausman GJ, Nettleton D, Anderson LL, Dekkers JC, Tuggle CK. Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 298: R494-507. PMID 19939971 DOI: 10.1152/Ajpregu.00632.2009 |
0.802 |
|
| 2010 |
Ciraci C, Tuggle CK, Wannemuehler MJ, Nettleton DS, Lamont SJ. Kinetic Profile of Chicken Macrophage Immune Response upon exposure to Salmonella-derived Endotoxin Animal Industry Report. 656: 2. DOI: 10.31274/Ans_Air-180814-134 |
0.42 |
|
| 2009 |
Couture O, Callenberg K, Koul N, Pandit S, Younes R, Hu ZL, Dekkers J, Reecy J, Honavar V, Tuggle C. ANEXdb: an integrated animal ANnotation and microarray EXpression database. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 20: 768-77. PMID 19936830 DOI: 10.1007/S00335-009-9234-1 |
0.751 |
|
| 2009 |
Lkhagvadorj S, Qu L, Cai W, Couture OP, Barb CR, Hausman GJ, Nettleton D, Anderson LL, Dekkers JC, Tuggle CK. Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant. Physiological Genomics. 38: 98-111. PMID 19366786 DOI: 10.1152/Physiolgenomics.90372.2008 |
0.809 |
|
| 2009 |
Ross JW, Ashworth MD, Stein DR, Couture OP, Tuggle CK, Geisert RD. Identification of differential gene expression during porcine conceptus rapid trophoblastic elongation and attachment to uterine luminal epithelium. Physiological Genomics. 36: 140-8. PMID 19033546 DOI: 10.1152/Physiolgenomics.00022.2008 |
0.768 |
|
| 2009 |
Uthe JJ, Wang Y, Qu L, Nettleton D, Tuggle CK, Bearson SM. Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine. Veterinary Microbiology. 135: 384-8. PMID 18996651 DOI: 10.1016/J.Vetmic.2008.09.074 |
0.789 |
|
| 2009 |
Jeannotte L, Coulombe Y, Lemieux M, Moreau J, Tabariès S, Guillou F, Joksimovic M, Tuggle CK, Aubin J. 01-P021 Transcriptional complexity at the murine Hoxa5 locus Mechanisms of Development. 126: S57. DOI: 10.1016/J.Mod.2009.06.022 |
0.708 |
|
| 2008 |
Tuggle CK, Wang YF, Couture OP, Qu L, Uthe JJ, Kuhar D, Lunney JK, Nettleton D, Dekkers JC, Bearson SM. Computational integration of structural and functional genomics data across species to develop information on the porcine inflammatory gene regulatory pathway. Developments in Biologicals. 132: 105-13. PMID 18817292 DOI: 10.1159/000317150 |
0.82 |
|
| 2008 |
Wang Y, Couture OP, Qu L, Uthe JJ, Bearson SM, Kuhar D, Lunney JK, Nettleton D, Dekkers JC, Tuggle CK. Analysis of porcine transcriptional response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkappaB are activated in the mesenteric lymph node. Bmc Genomics. 9: 437. PMID 18811943 DOI: 10.1186/1471-2164-9-437 |
0.822 |
|
| 2008 |
Zhu KQ, Carrougher GJ, Couture OP, Tuggle CK, Gibran NS, Engrav LH. Expression of collagen genes in the cones of skin in the Duroc/Yorkshire porcine model of fibroproliferative scarring. Journal of Burn Care & Research : Official Publication of the American Burn Association. 29: 815-27. PMID 18695616 DOI: 10.1097/Bcr.0B013E3181848141 |
0.743 |
|
| 2007 |
Wang Y, Qu L, Uthe JJ, Bearson SM, Kuhar D, Lunney JK, Couture OP, Nettleton D, Dekkers JC, Tuggle CK. Global transcriptional response of porcine mesenteric lymph nodes to Salmonella enterica serovar Typhimurium. Genomics. 90: 72-84. PMID 17499962 DOI: 10.1016/J.Ygeno.2007.03.018 |
0.811 |
|
| 2007 |
Tuggle CK, Wang Y, Couture O. Advances in swine transcriptomics. International Journal of Biological Sciences. 3: 132-52. PMID 17384733 DOI: 10.7150/Ijbs.3.132 |
0.781 |
|
| 2007 |
Uthe JJ, Royaee A, Lunney JK, Stabel TJ, Zhao SH, Tuggle CK, Bearson SM. Porcine differential gene expression in response to Salmonella enterica serovars Choleraesuis and Typhimurium. Molecular Immunology. 44: 2900-14. PMID 17337057 DOI: 10.1016/J.Molimm.2007.01.016 |
0.801 |
|
| 2007 |
Lkhagvadorj S, Qu L, Cai W, Couture O, Wang Y, Anderson LL, Dekkers JCM, Nettleton DS, Tuggle CK. Use of Transcriptional Profiling and Assessment of Blood Parameters to Understand Biological Mechanisms Controlling Feed Intake and Efficiency in Pigs Animal Industry Report. 653: 59. DOI: 10.31274/Ans_Air-180814-785 |
0.758 |
|
| 2006 |
Zhao SH, Kuhar D, Lunney JK, Dawson H, Guidry C, Uthe JJ, Bearson SM, Recknor J, Nettleton D, Tuggle CK. Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 777-89. PMID 16845603 DOI: 10.1007/S00335-005-0155-3 |
0.814 |
|
| 2006 |
Kim JW, Zhao SH, Uthe JJ, Bearson SM, Tuggle CK. Assignment of the scavenger receptor class B, member 2 gene (SCARB2) to porcine chromosome 8q11-->q12 by somatic cell and radiation hybrid panel mapping. Cytogenetic and Genome Research. 112: 342H. PMID 16484799 DOI: 10.1159/000089898 |
0.751 |
|
| 2006 |
Uthe JJ, Stabel TJ, Zhao SH, Tuggle CK, Bearson SM. Analysis of porcine differential gene expression following challenge with Salmonella enterica serovar Choleraesuis using suppression subtractive hybridization. Veterinary Microbiology. 114: 60-71. PMID 16364571 DOI: 10.1016/J.Vetmic.2005.10.042 |
0.823 |
|
| 2005 |
Zhao SH, Recknor J, Lunney JK, Nettleton D, Kuhar D, Orley S, Tuggle CK. Validation of a first-generation long-oligonucleotide microarray for transcriptional profiling in the pig. Genomics. 86: 618-25. PMID 16216716 DOI: 10.1016/J.Ygeno.2005.08.001 |
0.441 |
|
| 2005 |
Demeure O, Pomp D, Milan D, Rothschild MF, Tuggle CK. Mapping of 443 porcine EST improves the comparative maps for SSC1 and SSC7 with the human genome Animal Genetics. 36: 381-389. PMID 16167980 DOI: 10.1111/J.1365-2052.2005.01328.X |
0.347 |
|
| 2005 |
Abbott MA, Joksimovic M, Tuggle CK. Ectopic HOXA5 expression results in abnormal differentiation, migration and p53-independent cell death of superficial dorsal horn neurons. Brain Research. Developmental Brain Research. 159: 87-97. PMID 16139370 DOI: 10.1016/J.Devbrainres.2005.07.009 |
0.708 |
|
| 2005 |
Kim JW, Zhao SH, Uthe JJ, Bearson SM, Tuggle CK. Physical mapping of eight pig genes whose expression level is acutely affected by Salmonella challenge. Animal Genetics. 36: 359-62. PMID 16026354 DOI: 10.1111/J.1365-2052.2005.01309.X |
0.785 |
|
| 2005 |
Caetano AR, Edeal JB, Burns K, Johnson RK, Tuggle CK, Pomp D. Physical mapping of genes in the porcine ovarian transcriptome Animal Genetics. 36: 322-330. PMID 16026343 DOI: 10.1111/J.1365-2052.2005.01306.X |
0.402 |
|
| 2005 |
Joksimovic M, Jeannotte L, Tuggle CK. Dynamic expression of murine HOXA5 protein in the central nervous system. Gene Expression Patterns : Gep. 5: 792-800. PMID 15922675 DOI: 10.1016/J.Modgep.2005.03.008 |
0.731 |
|
| 2005 |
Lee SH, Zhao SH, Recknor JC, Nettleton D, Orley S, Kang SK, Lee BC, Hwang WS, Tuggle CK. Transcriptional profiling using a novel cDNA array identifies differential gene expression during porcine embryo elongation. Molecular Reproduction and Development. 71: 129-39. PMID 15791594 DOI: 10.1002/Mrd.20291 |
0.458 |
|
| 2005 |
Tabariès S, Lapointe J, Besch T, Carter M, Woollard J, Tuggle CK, Jeannotte L. Cdx protein interaction with Hoxa5 regulatory sequences contributes to Hoxa5 regional expression along the axial skeleton. Molecular and Cellular Biology. 25: 1389-401. PMID 15684390 DOI: 10.1128/Mcb.25.4.1389-1401.2005 |
0.369 |
|
| 2005 |
Li SJ, Zhao SH, Tuggle CK. Somatic cell hybrid and RH mapping of the tachykinin 3 gene to porcine chromosome 5 Animal Genetics. 36: 90-91. PMID 15670142 DOI: 10.1111/J.1365-2052.2004.01227.X |
0.34 |
|
| 2005 |
Zhao SH, Tuggle CK. Mapping of the porcine suppressor of cytokine signalling 3 gene to chromosome 12 using somatic cell and radiation hybrid panels Animal Genetics. 36: 88-90. PMID 15670141 DOI: 10.1111/J.1365-2052.2004.01228.X |
0.33 |
|
| 2004 |
Moller M, Berg F, Riquet J, Pomp D, Archibald A, Anderson S, Feve K, Zhang Y, Rothschild M, Milan D, Andersson L, Tuggle CK. High-resolution comparative mapping of pig Chromosome 4, emphasizing the FAT1 region. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 15: 717-31. PMID 15389320 DOI: 10.1007/S00335-004-2366-4 |
0.305 |
|
| 2004 |
Zhao SH, Simmons DG, Cross JC, Scheetz TE, Casavant TL, Soares MB, Tuggle CK. PLET1 (C11orf34), a highly expressed and processed novel gene in pig and mouse placenta, is transcribed but poorly spliced in human. Genomics. 84: 114-25. PMID 15203209 DOI: 10.1016/J.Ygeno.2004.02.006 |
0.419 |
|
| 2004 |
Krieger KE, Abbott MA, Joksimovic M, Lueth PA, Sonea IM, Jeannotte L, Tuggle CK. Transgenic mice ectopically expressing HOXA5 in the dorsal spinal cord show structural defects of the cervical spinal cord along with sensory and motor defects of the forelimb. Brain Research. Developmental Brain Research. 150: 125-39. PMID 15158076 DOI: 10.1016/J.Devbrainres.2004.03.005 |
0.697 |
|
| 2004 |
Zhao SH, Erickson A, Tuggle CK. Physical and linkage mapping of the lymphocyte antigen 86 (LY86) gene to porcine chromosome 7 Animal Genetics. 35: 164. PMID 15025593 DOI: 10.1111/J.1365-2052.2004.01110.X |
0.33 |
|
| 2004 |
Zhao SH, Tuggle CK. Linkage mapping and expression analyses of a novel gene, placentally expressed transcript 1 (PLET1) in the pig Animal Genetics. 35: 72-74. PMID 14731238 DOI: 10.1046/J.0268-9146.2003.01075.X |
0.439 |
|
| 2004 |
Tuggle CK. Finding the Genes Expressed in Female Reproductive Tissues in Pigs Animal Industry Report. 650: 109. DOI: 10.31274/Ans_Air-180814-845 |
0.382 |
|
| 2004 |
Tuggle CK, Zhang Y, Rothschild MF, Moller M, Berg F, Andersson L, Riquet J, Milan D, Pomp D, Archibald A, Anderson S. A detailed gene map of pig chromosome 4, where the first quantitative trait locus in livestock was mapped Animal Industry Report. 650: 110. DOI: 10.31274/Ans_Air-180814-605 |
0.316 |
|
| 2004 |
Tuggle CK, Shi X, Marklund L, Stumbaugh A, Stabel TJ, Mellencamp MA, Galina-Pantoja L, Bastiaansen J. Association of bacterial infection traits with genetic variation at candidate genes for porcine disease resistance Animal Industry Report. 650: 111. DOI: 10.31274/Ans_Air-180814-30 |
0.354 |
|
| 2003 |
Zhao SH, Nettleton D, Liu W, Fitzsimmons C, Ernst CW, Raney NE, Tuggle CK. Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle. Journal of Animal Science. 81: 2179-88. PMID 12968692 DOI: 10.2527/2003.8192179X |
0.389 |
|
| 2003 |
Tuggle CK, Green JA, Fitzsimmons C, Woods R, Prather RS, Malchenko S, Soares BM, Kucaba T, Crouch K, Smith C, Tack D, Robinson N, O'Leary B, Scheetz T, Casavant T, et al. EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 14: 565-79. PMID 12925889 DOI: 10.1007/S00335-002-2263-7 |
0.449 |
|
| 2002 |
Sun HS, Tuggle CK, Goureau A, Fitzsimmons CJ, Pinton P, Chardon P, Yerle M. Precise mapping of breakpoints in conserved synteny between human chromosome 1 and pig chromosomes 4, 6 and 9 Animal Genetics. 33: 91-96. PMID 12047221 DOI: 10.1046/J.1365-2052.2002.00819.X |
0.309 |
|
| 2002 |
Shi XW, Zhang YD, Rothschild MF, Tuggle CK. Rapid communication: Genetic linkage and physical mapping of the porcine cholesteryl ester transfer protein (CETP) gene Journal of Animal Science. 80: 1390-1391. PMID 12019635 DOI: 10.2527/2002.8051390X |
0.317 |
|
| 2001 |
Shi XW, Fitzsimmons CJ, Genêt C, Prather R, Whitworth K, Green JA, Tuggle CK. Radiation hybrid comparative mapping between human chromosome 17 and porcine chromosome 12 demonstrates conservation of gene order Animal Genetics. 32: 205-209. PMID 11531699 DOI: 10.1046/J.1365-2052.2001.00749.X |
0.373 |
|
| 2001 |
Yu TP, Sun HS, Wahls S, Sanchez-Serrano I, Rothschild MF, Tuggle CK. Cloning of the full length pig PIT1 (POU1F1) cDNA and a novel alternative PIT1 transcript, and functional studies of their encoded proteins Animal Biotechnology. 12: 1-19. PMID 11370678 DOI: 10.1081/Abio-100102975 |
0.359 |
|
| 1999 |
Tuggle CK, Sanchez-Serrano I, Smith B, Ernst C, Marklund L. Cloning, sequencing and mapping the pig gene for the muscle-specific intermediate filament protein desmin (DES). Animal Genetics. 30: 459-61. PMID 10612237 DOI: 10.1046/J.1365-2052.1999.00544.X |
0.333 |
|
| 1999 |
Sun HS, Yerle M, Pinton P, Chardon P, Rogel-Gaillard C, Lyons LA, Laughlin TF, Tuggle CK. Physical assignments of human chromosome 13 genes on pig chromosome 11 demonstrate extensive synteny and gene order conservation between pig and human Animal Genetics. 30: 304-308. PMID 10467706 DOI: 10.1046/J.1365-2052.1999.00474.X |
0.386 |
|
| 1999 |
Sun HF, Ernst CW, Yerle M, Pinton P, Rothschild MF, Chardon P, Rogel-Gaillard C, Tuggle CK. Human chromosome 3 and pig chromosome 13 show complete synteny conservation but extensive gene-order differences. Cytogenetics and Cell Genetics. 85: 273-8. PMID 10449917 DOI: 10.1159/000015312 |
0.362 |
|
| 1999 |
Larsen NJ, Marklund S, Kelly KA, Malek M, Tuggle CK, Yerle M, Rothschild MF. New insights into porcine-human synteny conservation Mammalian Genome. 10: 488-491. PMID 10337623 DOI: 10.1007/S003359901028 |
0.368 |
|
| 1999 |
Heltemes LM, Tuggle CK, Lamont SJ. Tissue expression patterns of chicken octamer-binding proteins Poultry Science. 78: 574-578. PMID 10230912 DOI: 10.1093/Ps/78.4.574 |
0.326 |
|
| 1999 |
Nowling T, Zhou W, Krieger KE, Larochelle C, Nguyen-Huu MC, Jeannotte L, Tuggle CK. Hoxa5 gene regulation: A gradient of binding activity to a brachial spinal cord element. Developmental Biology. 208: 134-46. PMID 10075847 DOI: 10.1006/Dbio.1998.9189 |
0.342 |
|
| 1999 |
Yu TP, Wang L, Tuggle CK, Rothschild MF. Mapping genes for fatness and growth on pig chromosome 13: A search in the region close to the pig PIT1 gene Journal of Animal Breeding and Genetics. 116: 269-280. DOI: 10.1046/J.1439-0388.1999.00198.X |
0.372 |
|
| 1998 |
Sun HS, Wang L, Rothschild MF, Tuggle CK. Mapping of the natural resistance-associated macrophage protein 1 (NRAMP1) gene to pig chromosome 15 Animal Genetics. 29: 138-140. PMID 9699275 DOI: 10.1046/J.1365-2052.1998.00298.X |
0.366 |
|
| 1998 |
Larsen NJ, Kenealy S, Tuggle CK, Rothschild MF. Rapid Communication: A HincII Polymorphism in the Porcine Calpain, Large Polypeptide L3 (CAPN3) Gene Journal of Animal Science. 76: 918-919. PMID 9535357 DOI: 10.2527/1998.763918X |
0.32 |
|
| 1998 |
Kenealy S, Larsen NJ, Tuggle CK, Rothschild MF. Rapid Communication: The Very-Long-Chain Acyl-CoA Dehydrogenase Gene Maps to Pig Chromosome 12 Journal of Animal Science. 76: 915-916. PMID 9535355 DOI: 10.2527/1998.763915X |
0.312 |
|
| 1998 |
Sun HS, Ernst CW, Rothschild MF, Tuggle CK. A strategy to rapidly identify restriction fragment length polymorphism (RFLP) in PCR products for gene mapping in animal families Technical Tips Online. 3: 102-105. DOI: 10.1016/S1366-2120(08)70112-0 |
0.338 |
|
| 1997 |
Sun HS, Taylor C, Robic A, Wang L, Rothschild MF, Tuggle CK. Mapping of growth hormone releasing hormone receptor to swine chromosome 18 Animal Genetics. 28: 351-353. PMID 9363596 DOI: 10.1111/J.1365-2052.1997.00164.X |
0.325 |
|
| 1997 |
Heltemes LM, Tuggle CK, Lamont SJ. Isolation and mapping, of two chicken POU family genes and the identification of a syntenic group with human and mouse Animal Genetics. 28: 346-350. PMID 9363595 DOI: 10.1111/J.1365-2052.1997.00160.X |
0.329 |
|
| 1997 |
Tuggle CK, Yu TP, Sun HS, Wang L, Rothschild MF. Rapid communication: mapping the pig VCAM1 locus to chromosome 4 using a double-stranded conformation polymorphism marker (VCAM1-2) Journal of Animal Science. 75: 2286. PMID 9263079 DOI: 10.2527/1997.7582286X |
0.312 |
|
| 1997 |
Messer LA, Wang L, Tuggle CK, Yerle M, Chardon P, Pomp D, Womack JE, Barendse W, Crawford AM, Notter DR, Rothschild MF. Mapping of the melatonin receptor 1a (MTNR1A) gene in pigs, sheep, and cattle. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 8: 368-70. PMID 9107687 DOI: 10.1007/S003359900444 |
0.37 |
|
| 1996 |
Tuggle CK, Trenkle A. Control of growth hormone synthesis Domestic Animal Endocrinology. 13: 1-33. PMID 8625613 DOI: 10.1016/0739-7240(95)00059-3 |
0.414 |
|
| 1996 |
Rothschild M, Jacobson C, Vaske D, Tuggle C, Wang L, Short T, Eckardt G, Sasaki S, Vincent A, McLaren D, Southwood O, van der Steen H, Mileham A, Plastow G. The estrogen receptor locus is associated with a major gene influencing litter size in pigs. Proceedings of the National Academy of Sciences of the United States of America. 93: 201-5. PMID 8552604 DOI: 10.1073/Pnas.93.1.201 |
0.365 |
|
| 1995 |
Yu TP, Tuggle CK, Schmitz CB, Rothschild MF. Association of PIT1 polymorphisms with growth and carcass traits in pigs Journal of Animal Science. 73: 1282-1288. PMID 7665359 DOI: 10.2527/1995.7351282X |
0.307 |
|
| 1994 |
Tuggle CK, Helm J, Rothschild MF. Cloning, sequencing and restriction fragment length polymorphism analysis of a porcine cDNA for OCT2 Animal Genetics. 25: 141-145. PMID 7943947 DOI: 10.1111/J.1365-2052.1994.Tb00102.X |
0.359 |
|
| 1994 |
Helm JM, Schmitz CB, Tuggle CK, Rothschild MF. Rapid communication: SacI restriction fragment length polymorphism in a porcine vascular cellular adhesion molecule (VCAM1) gene Journal of Animal Science. 72: 2764. PMID 7533754 DOI: 10.2527/1994.72102764X |
0.308 |
|
| 1994 |
Tuggle CK, Schmitz CB. Cloning and characterization of pig muscle cdnas by an expressed sequence tag approach Animal Biotechnology. 5: 1-13. DOI: 10.1080/10495399409525799 |
0.341 |
|
| 1990 |
Zakany J, Tuggle CK, Nguyen-Huu CM. The use of lacZ gene fusions in the studies of mammalian development: Developmental regulation of mammalian homeobox genes in the CNS Journal De Physiologie. 84: 21-26. PMID 1972758 |
0.361 |
|
| 1990 |
Tuggle CK, Zakany J, Cianetti L, Peschle C, Nguyen-Huu MC. Region-specific enhancers near two mammalian homeo box genes define adjacent rostrocaudal domains in the central nervous system Genes and Development. 4: 180-189. PMID 1970971 DOI: 10.1101/Gad.4.2.180 |
0.429 |
|
| 1988 |
Zakany J, Tuggle CK, Patel MD, Chi Nguyen-Huu M. Spatial regulation of homeobox gene fusions in the embryonic central nervous system of transgenic mice Neuron. 1: 679-691. PMID 2908448 DOI: 10.1016/0896-6273(88)90167-5 |
0.431 |
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