Judy Callis - Publications

Affiliations: 
Biochemistry and Molecular Biology University of California, Davis, Davis, CA 
Area:
Molecular Biology, Biochemistry

80 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Linden KJ, Chen YT, Kyaw K, Schultz B, Callis J. Factors that affect protein abundance of a positive regulator of abscisic acid signalling, the basic leucine zipper transcription factor ABRE-binding factor 2 (ABF2). Plant Direct. 5: e00330. PMID 34222769 DOI: 10.1002/pld3.330  0.412
2021 Linden KJ, Hsia MM, Chen YT, Callis J. The E3 Ubiquitin Ligase BRIZ Functions in Abscisic Acid Response. Frontiers in Plant Science. 12: 641849. PMID 33796126 DOI: 10.3389/fpls.2021.641849  0.806
2020 Linden KJ, Callis J. The ubiquitin system affects agronomic plant traits. The Journal of Biological Chemistry. PMID 32796036 DOI: 10.1074/Jbc.Rev120.011303  0.509
2019 Vain T, Raggi S, Ferro N, Barange DK, Kieffer M, Ma Q, Doyle SM, Thelander M, Pařízková B, Novák O, Ismail A, Enquist PA, Rigal A, Łangowska M, Ramans Harborough S, ... ... Callis J, et al. Selective auxin agonists induce specific AUX/IAA protein degradation to modulate plant development. Proceedings of the National Academy of Sciences of the United States of America. PMID 30850516 DOI: 10.1073/Pnas.1809037116  0.482
2017 Riggs JW, Cavales PC, Chapiro SM, Callis J. Identification and biochemical characterization of the fructokinase gene family in Arabidopsis thaliana. Bmc Plant Biology. 17: 83. PMID 28441933 DOI: 10.1186/S12870-017-1031-5  0.356
2017 Riggs JW, Callis J. Arabidopsis FRUCTOKINASE-LIKE PROTEIN associations are regulated by ATP. The Biochemical Journal. PMID 28377494 DOI: 10.1042/Bcj20161077  0.461
2017 Guerra D, Chapiro SM, Pratelli R, Yu S, Jia W, Leary J, Pilot G, Callis J. Control of amino acid homeostasis by a ubiquitin ligase-coactivator protein complex. The Journal of Biological Chemistry. PMID 28100770 DOI: 10.1074/Jbc.M116.766469  0.81
2016 Riggs JW, Rockwell NC, Cavales PC, Callis J. Identification of the plant ribokinase and discovery of a role for Arabidopsis ribokinase in nucleoside metabolism. The Journal of Biological Chemistry. PMID 27601466 DOI: 10.1074/Jbc.M116.754689  0.471
2016 Gilkerson J, Tam R, Zhang A, Dreher K, Callis J. Cycloheximide Assays to Measure Protein Degradation in vivo in Plants Bio-Protocol. 6. DOI: 10.21769/BIOPROTOC.1919  0.762
2015 Pauwels L, Ritter A, Goossens J, Durand AN, Liu H, Gu Y, Geerinck J, Boter M, Vanden Bossche R, De Clercq R, Van Leene J, Gevaert K, De Jaeger G, Solano R, Stone S, ... ... Callis J, et al. The RING E3 Ligase KEEP ON GOING Modulates JASMONATE ZIM-DOMAIN12 Stability. Plant Physiology. 169: 1405-17. PMID 26320228 DOI: 10.1104/Pp.15.00479  0.571
2015 Gilkerson J, Kelley DR, Tam R, Estelle M, Callis J. Lysine Residues Are Not Required for Proteasome-Mediated Proteolysis of the Auxin/Indole Acidic Acid Protein IAA1. Plant Physiology. 168: 708-20. PMID 25888615 DOI: 10.1104/Pp.15.00402  0.754
2014 Gilkerson J, Callis J. A genetic screen for mutants defective in IAA1-LUC degradation in Arabidopsis thaliana reveals an important requirement for TOPOISOMERASE6B in auxin physiology. Plant Signaling & Behavior. 9: e972207. PMID 25482814 DOI: 10.4161/Psb.29850  0.75
2014 Callis J. The ubiquitination machinery of the ubiquitin system. The Arabidopsis Book / American Society of Plant Biologists. 12: e0174. PMID 25320573 DOI: 10.1199/Tab.0174  0.572
2014 Pratelli R, Guerra DD, Yu S, Wogulis M, Kraft E, Frommer WB, Callis J, Pilot G. The Ubiquitin E3 Ligase LOSS OF GDU2 Is Required for Glutamine Dumper1-Induced Amino Acid Secretion in Arabidopsis Plant Physiology. 166: 451. DOI: 10.1104/pp.114.900491  0.759
2013 Guerra DD, Pratelli R, Kraft E, Callis J, Pilot G. Functional conservation between mammalian MGRN1 and plant LOG2 ubiquitin ligases Febs Letters. 587: 3400-3405. PMID 24036454 DOI: 10.1016/J.Febslet.2013.08.045  0.81
2013 Shin LJ, Lo JC, Chen GH, Callis J, Fu H, Yeh KC. IRT1 degradation factor1, a ring E3 ubiquitin ligase, regulates the degradation of iron-regulated transporter1 in Arabidopsis. The Plant Cell. 25: 3039-51. PMID 23995086 DOI: 10.1105/Tpc.113.115212  0.431
2013 Chen YT, Liu H, Stone S, Callis J. ABA and the ubiquitin E3 ligase KEEP ON GOING affect proteolysis of the Arabidopsis thaliana transcription factors ABF1 and ABF3. The Plant Journal : For Cell and Molecular Biology. 75: 965-76. PMID 23742014 DOI: 10.1111/Tpj.12259  0.496
2012 Hotton SK, Castro MF, Eigenheer RA, Callis J. Recovery of DDB1a (damaged DNA binding protein1a) in a screen to identify novel RUB-modified proteins in Arabidopsis thaliana. Molecular Plant. 5: 1163-6. PMID 22893627 DOI: 10.1093/Mp/Sss077  0.775
2012 Gilkerson J, Perez-Ruiz JM, Chory J, Callis J. The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana. Bmc Plant Biology. 12: 102. PMID 22770232 DOI: 10.1186/1471-2229-12-102  0.703
2012 Guerra DD, Callis J. Ubiquitin on the move: the ubiquitin modification system plays diverse roles in the regulation of endoplasmic reticulum- and plasma membrane-localized proteins. Plant Physiology. 160: 56-64. PMID 22730427 DOI: 10.1104/Pp.112.199869  0.807
2012 Pratelli R, Guerra DD, Yu S, Wogulis M, Kraft E, Frommer WB, Callis J, Pilot G. The ubiquitin E3 ligase LOSS OF GDU2 is required for GLUTAMINE DUMPER1-induced amino acid secretion in Arabidopsis. Plant Physiology. 158: 1628-42. PMID 22291198 DOI: 10.1104/Pp.111.191965  0.811
2011 Hotton SK, Eigenheer RA, Castro MF, Bostick M, Callis J. AXR1-ECR1 and AXL1-ECR1 heterodimeric RUB-activating enzymes diverge in function in Arabidopsis thaliana. Plant Molecular Biology. 75: 515-26. PMID 21311953 DOI: 10.1007/S11103-011-9750-8  0.8
2010 Berrocal-Lobo M, Stone S, Yang X, Antico J, Callis J, Ramonell KM, Somerville S. ATL9, a RING zinc finger protein with E3 ubiquitin ligase activity implicated in chitin- and NADPH oxidase-mediated defense responses. Plos One. 5: e14426. PMID 21203445 DOI: 10.1371/Journal.Pone.0014426  0.463
2010 Hsia MM, Callis J. BRIZ1 and BRIZ2 proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth in Arabidopsis thaliana. The Journal of Biological Chemistry. 285: 37070-81. PMID 20810661 DOI: 10.1074/Jbc.M110.168021  0.831
2009 Gilkerson J, Hu J, Brown J, Jones A, Sun TP, Callis J. Isolation and characterization of cul1-7, a recessive allele of CULLIN1 that disrupts SCF function at the C terminus of CUL1 in Arabidopsis thaliana. Genetics. 181: 945-63. PMID 19114460 DOI: 10.1534/Genetics.108.097675  0.751
2008 Kraft E, Bostick M, Jacobsen SE, Callis J. ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. The Plant Journal : For Cell and Molecular Biology. 56: 704-15. PMID 18643997 DOI: 10.1111/J.1365-313X.2008.03631.X  0.824
2008 Hotton SK, Callis J. Regulation of cullin RING ligases. Annual Review of Plant Biology. 59: 467-89. PMID 18444905 DOI: 10.1146/Annurev.Arplant.58.032806.104011  0.816
2008 Salmon J, Ramos J, Callis J. Degradation of the auxin response factor ARF1. The Plant Journal : For Cell and Molecular Biology. 54: 118-28. PMID 18088308 DOI: 10.1111/J.1365-313X.2007.03396.X  0.71
2007 Doelling JH, Phillips AR, Soyler-Ogretim G, Wise J, Chandler J, Callis J, Otegui MS, Vierstra RD. The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis. Plant Physiology. 145: 801-13. PMID 17905865 DOI: 10.1104/Pp.106.095323  0.776
2007 Stone SL, Callis J. Ubiquitin ligases mediate growth and development by promoting protein death. Current Opinion in Plant Biology. 10: 624-32. PMID 17851112 DOI: 10.1016/J.Pbi.2007.07.010  0.448
2007 Scherer GF, Zahn M, Callis J, Jones AM. A role for phospholipase A in auxin-regulated gene expression. Febs Letters. 581: 4205-11. PMID 17692850 DOI: 10.1016/J.Febslet.2007.07.059  0.65
2007 Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Current Biology : Cb. 17: 379-84. PMID 17239600 DOI: 10.1016/J.Cub.2007.01.009  0.76
2007 Dreher K, Callis J. Ubiquitin, hormones and biotic stress in plants. Annals of Botany. 99: 787-822. PMID 17220175 DOI: 10.1093/Aob/Mcl255  0.799
2006 Stone SL, Williams LA, Farmer LM, Vierstra RD, Callis J. KEEP ON GOING, a RING E3 ligase essential for Arabidopsis growth and development, is involved in abscisic acid signaling. The Plant Cell. 18: 3415-28. PMID 17194765 DOI: 10.1105/Tpc.106.046532  0.809
2006 Dreher KA, Brown J, Saw RE, Callis J. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. The Plant Cell. 18: 699-714. PMID 16489122 DOI: 10.1105/Tpc.105.039172  0.777
2005 Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS, Deng XW, Callis J. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiology. 139: 1597-611. PMID 16339806 DOI: 10.1104/Pp.105.067983  0.442
2005 Callis J, Ling R. Preparation, characterization, and use of tagged ubiquitins. Methods in Enzymology. 399: 51-64. PMID 16338348 DOI: 10.1016/S0076-6879(05)99004-6  0.47
2005 Callis J. Plant biology: auxin action. Nature. 435: 436-7. PMID 15917792 DOI: 10.1038/435436B  0.388
2005 Figueroa P, Gusmaroli G, Serino G, Habashi J, Ma L, Shen Y, Feng S, Bostick M, Callis J, Hellmann H, Deng XW. Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. The Plant Cell. 17: 1180-95. PMID 15772280 DOI: 10.1105/Tpc.105.031989  0.84
2005 Stone SL, Hauksdóttir H, Troy A, Herschleb J, Kraft E, Callis J. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Plant Physiology. 137: 13-30. PMID 15644464 DOI: 10.1104/Pp.104.052423  0.47
2004 Bostick M, Lochhead SR, Honda A, Palmer S, Callis J. Related to ubiquitin 1 and 2 are redundant and essential and regulate vegetative growth, auxin signaling, and ethylene production in Arabidopsis. The Plant Cell. 16: 2418-32. PMID 15319484 DOI: 10.1105/Tpc.104.024943  0.837
2004 Laplaza JM, Bostick M, Scholes DT, Curcio MJ, Callis J. Saccharomyces cerevisiae ubiquitin-like protein Rub1 conjugates to cullin proteins Rtt101 and Cul3 in vivo. The Biochemical Journal. 377: 459-67. PMID 14519104 DOI: 10.1042/Bj20030755  0.804
2003 Zenser N, Dreher KA, Edwards SR, Callis J. Acceleration of Aux/IAA proteolysis is specific for auxin and independent of AXR1. The Plant Journal : For Cell and Molecular Biology. 35: 285-94. PMID 12887580 DOI: 10.1046/J.1365-313X.2003.01801.X  0.805
2002 Linghu B, Callis J, Goebl MG. Rub1p processing by Yuh1p is required for wild-type levels of Rub1p conjugation to Cdc53p. Eukaryotic Cell. 1: 491-4. PMID 12455997 DOI: 10.1128/Ec.1.3.491-494.2002  0.446
2002 Yoshida S, Ito M, Callis J, Nishida I, Watanabe A. A delayed leaf senescence mutant is defective in arginyl-tRNA:protein arginyltransferase, a component of the N-end rule pathway in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 32: 129-37. PMID 12366806 DOI: 10.1046/J.1365-313X.2002.01407.X  0.444
2001 McClinton RS, Chandler JS, Callis J. cDNA isolation, characterization, and protein intracellular localization of a katanin-like p60 subunit from Arabidopsis thaliana. Protoplasma. 216: 181-90. PMID 11732186 DOI: 10.1007/Bf02673870  0.451
2001 Ramos JA, Zenser N, Leyser O, Callis J. Rapid degradation of auxin/indoleacetic acid proteins requires conserved amino acids of domain II and is proteasome dependent. The Plant Cell. 13: 2349-60. PMID 11595806 DOI: 10.1105/Tpc.010244  0.691
2001 Zenser N, Ellsmore A, Leasure C, Callis J. Auxin modulates the degradation rate of Aux/IAA proteins Proceedings of the National Academy of Sciences of the United States of America. 98: 11795-11800. PMID 11573012 DOI: 10.1073/Pnas.211312798  0.511
2001 Schwechheimer C, Serino G, Callis J, Crosby WL, Lyapina S, Deshaies RJ, Gray WM, Estelle M, Deng XW. Interactions of the COP9 signalosome with the E3 ubiquitin ligase SCFTIRI in mediating auxin response. Science (New York, N.Y.). 292: 1379-82. PMID 11337587 DOI: 10.1126/Science.1059776  0.48
2000 Callis J, Vierstra RD. Protein degradation in signaling. Current Opinion in Plant Biology. 3: 381-6. PMID 11019805 DOI: 10.1016/S1369-5266(00)00100-X  0.601
2000 Rao-Naik C, Chandler JS, McArdle B, Callis J. Ubiquitin-specific proteases from Arabidopsis thaliana: cloning of AtUBP5 and analysis of substrate specificity of AtUBP3, AtUBP4, and AtUBP5 using Escherichia coli in vivo and in vitro assays. Archives of Biochemistry and Biophysics. 379: 198-208. PMID 10898935 DOI: 10.1006/Abbi.2000.1874  0.421
2000 Ling R, Colón E, Dahmus ME, Callis J. Histidine-tagged ubiquitin substitutes for wild-type ubiquitin in Saccharomyces cerevisiae and facilitates isolation and identification of in vivo substrates of the ubiquitin pathway Analytical Biochemistry. 282: 54-64. PMID 10860499 DOI: 10.1006/Abio.2000.4586  0.521
2000 Worley CK, Zenser N, Ramos J, Rouse D, Leyser O, Theologis A, Callis J. Degradation of Aux/IAA proteins is essential for normal auxin signalling Plant Journal. 21: 553-562. PMID 10758506 DOI: 10.1046/J.1365-313X.2000.00703.X  0.745
1999 Vierstra RD, Callis J. Polypeptide tags, ubiquitous modifiers for plant protein regulation. Plant Molecular Biology. 41: 435-42. PMID 10608654 DOI: 10.1023/A:1006323317890  0.654
1998 Rao-Naik C, delaCruz W, Laplaza JM, Tan S, Callis J, Fisher AJ. The rub family of ubiquitin-like proteins. Crystal structure of Arabidopsis rub1 and expression of multiple rubs in Arabidopsis. The Journal of Biological Chemistry. 273: 34976-82. PMID 9857029 DOI: 10.1074/Jbc.273.52.34976  0.84
1998 Del Pozo JC, Timpte C, Tan S, Callis J, Estelle M. The ubiquitin-related protein RUB1 and auxin response in Arabidopsis Science. 280: 1760-1763. PMID 9624055 DOI: 10.1126/Science.280.5370.1760  0.54
1998 Worley CK, Ling R, Callis J. Engineering in vivo instability of firefly luciferase and Escherichia coli β-glucuronidase in higher plants using recognition elements from the ubiquitin pathway Plant Molecular Biology. 37: 337-347. PMID 9617805 DOI: 10.1023/A:1006089924093  0.5
1998 Lammer D, Mathias N, Laplaza JM, Jiang W, Liu Y, Callis J, Goebl M, Estelle M. Modification of yeast Cdc53p by the ubiquitin-related protein rub1p affects function of the SCFCdc4 complex. Genes & Development. 12: 914-26. PMID 9531531 DOI: 10.1101/Gad.12.7.914  0.819
1997 Sun CW, Griffen S, Callis J. A model for the evolution of polyubiquitin genes from the study of Arabidopsis thaliana ecotypes Plant Molecular Biology. 34: 745-758. PMID 9278165 DOI: 10.1023/A:1005848828368  0.426
1997 Chandler JS, McArdle B, Callis J. AtUBP3 and AtUBP4 are two closely related Arabidopsis thaliana ubiquitin-specific proteases present in the nucleus Molecular and General Genetics. 255: 302-310. PMID 9268021 DOI: 10.1007/s004380050501  0.401
1997 Sun CW, Callis J. Independent modulation of Arabidopsis thaliana polyubiquitin mRNAs in different organs and in response to environmental changes Plant Journal. 11: 1017-1027. PMID 9193073 DOI: 10.1046/J.1365-313X.1997.11051017.X  0.354
1995 Callis J, Carpenter T, Sun CW, Vierstra RD. Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. Genetics. 139: 921-39. PMID 7713442  0.535
1995 Callis J. Regulation of protein degradation Plant Cell. 7: 845-857. DOI: 10.1105/Tpc.7.7.845  0.505
1994 Callis J, Bedinger P. Developmentally regulated loss of ubiquitin and ubiquitinated proteins during pollen maturation in maize Proceedings of the National Academy of Sciences of the United States of America. 91: 6074-6077. PMID 7517039 DOI: 10.1073/Pnas.91.13.6074  0.781
1993 Beers EP, Callis J. Utility of polyhistidine-tagged ubiquitin in the purification of ubiquitin-protein conjugates and as an affinity ligand for the purification of ubiquitin-specific hydrolases Journal of Biological Chemistry. 268: 21645-21649. PMID 8408016  0.411
1993 Norris SR, Meyer SE, Callis J. The intron of Arabidopsis thaliana polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression Plant Molecular Biology. 21: 895-906. PMID 8385509 DOI: 10.1007/Bf00027120  0.374
1993 Sun CW, Callis J. Recent stable insertion of mitochondrial DNA into an arabidopsis polyubiquitin gene by nonhomologous recombination Plant Cell. 5: 97-107. PMID 8382544 DOI: 10.1105/Tpc.5.1.97  0.301
1992 Beers EP, Moreno TN, Callis J. Subcellular localization of ubiquitin and ubiquitinated proteins in Arabidopsis thaliana Journal of Biological Chemistry. 267: 15432-15439. PMID 1322398  0.397
1990 Sullivan ML, Callis J, Vierstra RD. High performance liquid chromatography resolution of ubiquitin pathway enzymes from wheat germ. Plant Physiology. 94: 710-6. PMID 16667769 DOI: 10.1104/Pp.94.2.710  0.674
1990 Hatfield PM, Callis J, Vierstra RD. Cloning of ubiquitin activating enzyme from wheat and expression of a functional protein in Escherichia coli. The Journal of Biological Chemistry. 265: 15813-7. PMID 2203788  0.611
1990 Callis J, Raasch JA, Vierstra RD. Ubiquitin extension proteins of Arabidopsis thaliana. Structure, localization, and expression of their promoters in transgenic tobacco. The Journal of Biological Chemistry. 265: 12486-93. PMID 2165066  0.657
1989 Roberts JK, Chang K, Webster C, Callis J, Walbot V. Dependence of Ethanolic Fermentation, Cytoplasmic pH Regulation, and Viability on the Activity of Alcohol Dehydrogenase in Hypoxic Maize Root Tips. Plant Physiology. 89: 1275-8. PMID 16666696 DOI: 10.1104/Pp.89.4.1275  0.542
1989 Callis J, Pollmann L, Shanklin J, Wettern M, Vierstra RD. Sequence of a cDNA from Chlamydomonas reinhardii encoding a ubiquitin 52 amino acid extension protein. Nucleic Acids Research. 17: 8377. PMID 2554258 DOI: 10.1093/Nar/17.20.8377  0.558
1988 Callis J, Fromm M, Walbot V. Heat Inducible Expression of a Chimeric Maize hsp70CAT Gene in Maize Protoplasts. Plant Physiology. 88: 965-8. PMID 16666486 DOI: 10.1104/Pp.88.4.965  0.47
1988 Burke TJ, Callis J, Vierstra RD. Characterization of a polyubiquitin gene from Arabidopsis thaliana. Molecular & General Genetics : Mgg. 213: 435-43. PMID 2460733 DOI: 10.1007/Bf00339613  0.545
1987 Callis J, Fromm M, Walbot V. Expression of mRNA electroporated into plant and animal cells. Nucleic Acids Research. 15: 5823-31. PMID 3475678 DOI: 10.1093/Nar/15.14.5823  0.482
1987 Callis J, Fromm M, Walbot V. Introns increase gene expression in cultured maize cells. Genes & Development. 1: 1183-200. PMID 2828168 DOI: 10.1101/Gad.1.10.1183  0.638
1987 Fromm M, Callis J, Taylor LP, Walbot V. [21] Electroporation of DNA and RNA into plant protoplasts Methods in Enzymology. 153: 351-366. DOI: 10.1016/0076-6879(87)53064-6  0.754
1984 Roberts JK, Callis J, Jardetzky O, Walbot V, Freeling M. Cytoplasmic acidosis as a determinant of flooding intolerance in plants. Proceedings of the National Academy of Sciences of the United States of America. 81: 6029-33. PMID 6592598 DOI: 10.1073/Pnas.81.19.6029  0.555
1984 Roberts JK, Callis J, Wemmer D, Walbot V, Jardetzky O. Mechanisms of cytoplasmic pH regulation in hypoxic maize root tips and its role in survival under hypoxia. Proceedings of the National Academy of Sciences of the United States of America. 81: 3379-83. PMID 6587355 DOI: 10.1073/Pnas.81.11.3379  0.518
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