Kathleen M. Fisch, Ph.D. - Publications

Affiliations: 
2011 Ecology University of California, Davis, Davis, CA 
Area:
Conservation Biology, Genetics, Ecology Biology

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sakai A, Ando M, Fukusumi T, Ren S, Liu C, Qualliotine J, Haft S, Sadat S, Saito Y, Guo TW, Xu G, Sasik R, Fisch KM, Gutkind JS, Fertig EJ, et al. Aberrant expression of CPSF1 promotes head and neck squamous cell carcinoma via regulating alternative splicing. Plos One. 15: e0233380. PMID 32437477 DOI: 10.1371/Journal.Pone.0233380  0.318
2020 Jiang Q, Holm F, Isquith J, Mark A, Mason C, Reynoso E, Morris I, Ma W, Diep R, Pham J, Nasamran C, Xu G, Sasik R, Rosenthal SB, Birmingham A, ... ... Fisch K, et al. Abstract 5726: A-to-I RNA deaminase deregulation in pre-leukemia stem cell evolution Cancer Research. 80: 5726-5726. DOI: 10.1158/1538-7445.Am2020-5726  0.315
2019 Lytle NK, Ferguson LP, Rajbhandari N, Gilroy K, Fox RG, Deshpande A, Schürch CM, Hamilton M, Robertson N, Lin W, Noel P, Wartenberg M, Zlobec I, Eichmann M, Galván JA, ... ... Fisch KM, et al. A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma. Cell. PMID 30955884 DOI: 10.1016/J.Cell.2019.03.010  0.313
2019 Fisch KM. Biological Interpretation of Complex Genomic Data. Methods in Molecular Biology (Clifton, N.J.). 1908: 61-71. PMID 30649721 DOI: 10.1007/978-1-4939-9004-7_5  0.313
2019 Bastian IN, Li W, Phung Q, Fisch K, Lill J, Karin M, Shalapour S. Abstract 2247: Platinoid-induced MHCI antigen presentation enables checkpoint inhibitor responsiveness Cancer Research. 79: 2247-2247. DOI: 10.1158/1538-7445.Am2019-2247  0.3
2018 Fisch KM, Gamini R, Alvarez-Garcia O, Akagi R, Saito M, Muramatsu Y, Sasho T, Koziol JA, Su AI, Lotz MK. Identification of transcription factors responsible for dysregulated networks in human osteoarthritis cartilage by global gene expression analysis. Osteoarthritis and Cartilage. PMID 30081074 DOI: 10.1016/J.Joca.2018.07.012  0.728
2018 Finger AJ, Mahardja B, Fisch KM, Benjamin A, Lindberg J, Ellison L, Ghebremariam T, Hung TC, May B. A conservation hatchery population of Delta Smelt shows evidence of genetic adaptation to captivity after 9 generations. The Journal of Heredity. PMID 30016452 DOI: 10.1093/Jhered/Esy035  0.73
2018 Birmingham A, Mark AM, Mazzaferro C, Xu G, Fisch KM. Efficient population-scale variant analysis and prioritization with VAPr. Bioinformatics (Oxford, England). PMID 29659724 DOI: 10.1093/Bioinformatics/Bty192  0.321
2017 Carter H, Marty R, Hofree M, Gross A, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg JF, Lippman SM, Yeo G, Gutkind S, et al. Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. Cancer Discovery. PMID 28188128 DOI: 10.1158/2159-8290.Cd-16-1045  0.315
2017 Cowell AN, Loy DE, Sundararaman SA, Valdivia H, Fisch K, Lescano AG, Baldeviano GC, Durand S, Gerbasi V, Sutherland CJ, Nolder D, Vinetz JM, Hahn BH, Winzeler EA. Selective Whole-Genome Amplification Is a Robust Method That Enables Scalable Whole-Genome Sequencing of Plasmodium vivax from Unprocessed Clinical Samples. Mbio. 8. PMID 28174312 DOI: 10.1128/Mbio.02257-16  0.311
2016 Akagi R, Akatsu Y, Fisch KM, Alvarez-Garcia O, Teramura T, Muramatsu Y, Saito M, Sasho T, Su AI, Lotz MK. Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-β signaling in chondrocytes. Osteoarthritis and Cartilage. PMID 27884645 DOI: 10.1016/J.Joca.2016.11.007  0.541
2016 Alvarez-Garcia O, Olmer M, Akagi R, Akasaki Y, Fisch KM, Shen T, Su AI, Lotz MK. Suppression of REDD1 in osteoarthritis cartilage, a novel mechanism for dysregulated mTOR signaling and defective autophagy. Osteoarthritis and Cartilage / Oars, Osteoarthritis Research Society. PMID 27118398 DOI: 10.1016/J.Joca.2016.04.015  0.534
2016 Alvarez-Garcia O, Fisch KM, Wineinger NE, Akagi R, Saito M, Sasho T, Su AI, Lotz MK. Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage. Arthritis & Rheumatology (Hoboken, N.J.). 68: 1876-86. PMID 26881698 DOI: 10.1002/Art.39643  0.54
2015 Meißner T, Fisch KM, Gioia L, Su AI. OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing. Bmc Medical Genomics. 8: 24. PMID 25989980 DOI: 10.1186/S12920-015-0095-Z  0.733
2015 Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI. Omics Pipe: a community-based framework for reproducible multi-omics data analysis. Bioinformatics (Oxford, England). 31: 1724-8. PMID 25637560 DOI: 10.1093/Bioinformatics/Btv061  0.691
2015 Meißner T, Fisch KM, Gioia L, Su AI. From Fastq to Drug Recommendation – Automated Cancer Report Generation using OncoRep & Omics Pipe F1000research. 4. DOI: 10.7490/F1000Research.1110018.1  0.714
2015 LaCava M, Fisch K, Nagel M, Lindberg JC, May B, Finger AJ. Spawning Behavior of Cultured Delta Smelt in a Conservation Hatchery North American Journal of Aquaculture. 77: 255-266. DOI: 10.1080/15222055.2015.1007192  0.723
2015 Fisch KM, Kozfkay CC, Ivy JA, Ryder OA, Waples RS. Fish Hatchery Genetic Management Techniques: Integrating Theory with Implementation North American Journal of Aquaculture. 77: 343-357. DOI: 10.1080/15222055.2014.999846  0.325
2015 Alvarez-Garcia O, Fisch K, Akagi R, Su A, Lotz M. Differential DNA methylation and reduced expression of critical transcription factors in human oa cartilage Osteoarthritis and Cartilage. 23: A72-A73. DOI: 10.1016/J.Joca.2015.02.148  0.533
2015 Alvarez-Garcia O, Akagi R, Akasaki Y, Fisch K, Su A, Lotz M. Suppression of REDD1 in OA cartilage, a novel mechanism for dysregulated mTOR activation Osteoarthritis and Cartilage. 23: A31. DOI: 10.1016/J.Joca.2015.02.074  0.523
2014 Wei N, Shi Y, Truong LN, Fisch KM, Xu T, Gardiner E, Fu G, Hsu YO, Kishi S, Su AI, Wu X, Yang XL. Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage. Molecular Cell. 56: 323-332. PMID 25284223 DOI: 10.1016/J.Molcel.2014.09.006  0.503
2014 Fisch K, Saito M, Akagi R, Duffy S, Alvarez-Garcia O, Grogan S, D’Lima D, Su A, Lotz M. Integrative Omics profiling of osteoarthritis Osteoarthritis and Cartilage. 22: S231-S232. DOI: 10.1016/J.Joca.2014.02.446  0.511
2014 Fisch KM, Mahardja B, Burton RS, May B. Hybridization between delta smelt and two other species within the family Osmeridae in the San Francisco Bay-Delta Conservation Genetics. 15: 489-494. DOI: 10.1007/S10592-013-0555-Y  0.531
2013 Fisch KM, Ivy JA, Burton RS, May B. Evaluating the performance of captive breeding techniques for conservation hatcheries: a case study of the delta smelt captive breeding program. The Journal of Heredity. 104: 92-104. PMID 23125405 DOI: 10.1093/Jhered/Ess084  0.562
2013 Lindberg JC, Tigan G, Ellison L, Rettinghouse T, Nagel MM, Fisch KM. Aquaculture methods for a genetically managed population of endangered Delta Dmelt North American Journal of Aquaculture. 75: 186-196. DOI: 10.1080/15222055.2012.751942  0.327
2011 Israel JA, Fisch KM, Turner TF, Waples RS. Conservation of Native Fishes of the San Francisco Estuary: Considerations for Artificial Propagation of Chinook Salmon, Delta Smelt, and Green Sturgeon San Francisco Estuary and Watershed Science. 9. DOI: 10.15447/Sfews.2011V9Iss1Art6  0.681
2011 Fisch KM, Henderson JM, Burton RS, May B. Population genetics and conservation implications for the endangered delta smelt in the San Francisco Bay-Delta Conservation Genetics. 12: 1421-1434. DOI: 10.1007/S10592-011-0240-Y  0.556
2009 Fisch KM, Petersen JL, Baerwald MR, Pedroia JK, May B. Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross-species amplification in two other smelt species of the Osmeridae family. Molecular Ecology Resources. 9: 405-8. PMID 21564663 DOI: 10.1111/J.1755-0998.2008.02254.X  0.53
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