| Year |
Citation |
Score |
| 2018 |
Jaffe DB, Brenner R. A computational model for how the fast afterhyperpolarization paradoxically increases gain in regularly firing neurons. Journal of Neurophysiology. PMID 29357445 DOI: 10.1152/Jn.00385.2017 |
0.551 |
|
| 2017 |
Whitmire LE, Ling L, Bugay V, Carver CM, Timilsina S, Chuang HH, Jaffe DB, Shapiro MS, Cavazos JE, Brenner R. Downregulation of KCNMB4 expression and changes in BK channel subtype in hippocampal granule neurons following seizure activity. Plos One. 12: e0188064. PMID 29145442 DOI: 10.1371/Journal.Pone.0188064 |
0.394 |
|
| 2017 |
Du X, Hao H, Yang Y, Huang S, Wang C, Gigout S, Ramli R, Li X, Jaworska E, Edwards I, Deuchars J, Yanagawa Y, Qi J, Guan B, Jaffe DB, et al. Local GABAergic signaling within sensory ganglia controls peripheral nociceptive transmission. The Journal of Clinical Investigation. PMID 28375159 DOI: 10.1172/Jci86812 |
0.333 |
|
| 2016 |
Wang B, Bugay V, Ling L, Chuang HH, Jaffe DB, Brenner R. Knockout of the BK β4 subunit promotes a functional coupling of BK channels and ryanodine receptors that mediate a fAHP-induced increase in excitability. Journal of Neurophysiology. jn.00857.2015. PMID 27146987 DOI: 10.1152/Jn.00857.2015 |
0.424 |
|
| 2015 |
Sundt D, Gamper N, Jaffe DB. Spike propagation through the dorsal root ganglia in an unmyelinated sensory neuron: a modeling study. Journal of Neurophysiology. jn.00226.2015. PMID 26334005 DOI: 10.1152/jn.00226.2015 |
0.371 |
|
| 2014 |
Wang B, Jaffe DB, Brenner R. Current understanding of iberiotoxin-resistant BK channels in the nervous system. Frontiers in Physiology. 5: 382. PMID 25346692 DOI: 10.3389/Fphys.2014.00382 |
0.46 |
|
| 2014 |
Du X, Hao H, Gigout S, Huang D, Yang Y, Li L, Wang C, Sundt D, Jaffe DB, Zhang H, Gamper N. Control of somatic membrane potential in nociceptive neurons and its implications for peripheral nociceptive transmission. Pain. 155: 2306-22. PMID 25168672 DOI: 10.1016/J.Pain.2014.08.025 |
0.444 |
|
| 2011 |
Jaffe DB, Wang B, Brenner R. Shaping of action potentials by type I and type II large-conductance Ca²+-activated K+ channels. Neuroscience. 192: 205-18. PMID 21723921 DOI: 10.1016/J.Neuroscience.2011.06.028 |
0.439 |
|
| 2009 |
Hemond P, Migliore M, Ascoli GA, Jaffe DB. The membrane response of hippocampal CA3b pyramidal neurons near rest: Heterogeneity of passive properties and the contribution of hyperpolarization-activated currents. Neuroscience. 160: 359-70. PMID 19232379 DOI: 10.1016/j.neuroscience.2009.01.082 |
0.558 |
|
| 2008 |
Hemond P, Epstein D, Boley A, Migliore M, Ascoli GA, Jaffe DB. Distinct classes of pyramidal cells exhibit mutually exclusive firing patterns in hippocampal area CA3b. Hippocampus. 18: 411-24. PMID 18189311 DOI: 10.1002/Hipo.20404 |
0.482 |
|
| 2007 |
Jaffe DB, Gutiérrez R. Mossy fiber synaptic transmission: communication from the dentate gyrus to area CA3. Progress in Brain Research. 163: 109-32. PMID 17765714 DOI: 10.1016/S0079-6123(07)63006-4 |
0.537 |
|
| 2007 |
Zaika O, Tolstykh GP, Jaffe DB, Shapiro MS. Inositol triphosphate-mediated Ca2+ signals direct purinergic P2Y receptor regulation of neuronal ion channels. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 8914-26. PMID 17699673 DOI: 10.1523/JNEUROSCI.1739-07.2007 |
0.513 |
|
| 2006 |
Gamper N, Zaika O, Li Y, Martin P, Hernandez CC, Perez MR, Wang AY, Jaffe DB, Shapiro MS. Oxidative modification of M-type K(+) channels as a mechanism of cytoprotective neuronal silencing. The Embo Journal. 25: 4996-5004. PMID 17024175 DOI: 10.1038/Sj.Emboj.7601374 |
0.402 |
|
| 2006 |
Zaika O, Lara LS, Gamper N, Hilgemann DW, Jaffe DB, Shapiro MS. Angiotensin II regulates neuronal excitability via phosphatidylinositol 4,5-bisphosphate-dependent modulation of Kv7 (M-type) K+ channels. The Journal of Physiology. 575: 49-67. PMID 16777936 DOI: 10.1113/jphysiol.2006.114074 |
0.478 |
|
| 2005 |
Hemond P, Jaffe DB. Caloric restriction prevents aging-associated changes in spike-mediated Ca2+ accumulation and the slow afterhyperpolarization in hippocampal CA1 pyramidal neurons. Neuroscience. 135: 413-20. PMID 16112472 DOI: 10.1016/j.neuroscience.2005.05.044 |
0.532 |
|
| 2001 |
Gulledge AT, Jaffe DB. Multiple effects of dopamine on layer V pyramidal cell excitability in rat prefrontal cortex. Journal of Neurophysiology. 86: 586-95. PMID 11495934 DOI: 10.1152/Jn.2001.86.2.586 |
0.707 |
|
| 2000 |
Barea-Rodríguez EJ, Rivera DT, Jaffe DB, Martinez JL. Protein synthesis inhibition blocks the induction of mossy fiber long-term potentiation in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 8528-32. PMID 11069960 DOI: 10.1523/Jneurosci.20-22-08528.2000 |
0.33 |
|
| 1999 |
Jaffe DB, Carnevale NT. Passive normalization of synaptic integration influenced by dendritic architecture. Journal of Neurophysiology. 82: 3268-85. PMID 10601459 DOI: 10.1152/Jn.1999.82.6.3268 |
0.54 |
|
| 1999 |
Chitwood RA, Hubbard A, Jaffe DB. Passive electrotonic properties of rat hippocampal CA3 interneurones. The Journal of Physiology. 515: 743-56. PMID 10066901 DOI: 10.1111/J.1469-7793.1999.743Ab.X |
0.769 |
|
| 1998 |
Gulledge AT, Jaffe DB. Dopamine decreases the excitability of layer V pyramidal cells in the rat prefrontal cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 18: 9139-51. PMID 9787016 DOI: 10.1523/Jneurosci.18-21-09139.1998 |
0.709 |
|
| 1998 |
Chitwood RA, Jaffe DB. Calcium-dependent spike-frequency accommodation in hippocampal CA3 nonpyramidal neurons. Journal of Neurophysiology. 80: 983-8. PMID 9705484 DOI: 10.1152/Jn.1998.80.2.983 |
0.757 |
|
| 1998 |
Jaffe DB, Chitwood RA. Effects of spike-frequency accommodation on inhibitory neural network oscillations Southern Biomedical Engineering Conference - Proceedings. 114. |
0.706 |
|
| 1997 |
Jaffe DB, Brown TH. Calcium dynamics in thorny excrescences of CA3 pyramidal neurons. Journal of Neurophysiology. 78: 10-8. PMID 9242255 DOI: 10.1152/Jn.1997.78.1.10 |
0.449 |
|
| 1995 |
Migliore M, Cook EP, Jaffe DB, Turner DA, Johnston D. Computer simulations of morphologically reconstructed CA3 hippocampal neurons. Journal of Neurophysiology. 73: 1157-68. PMID 7608762 DOI: 10.1152/Jn.1995.73.3.1157 |
0.763 |
|
| 1994 |
Jaffe DB, Ross WN, Lisman JE, Lasser-Ross N, Miyakawa H, Johnston D. A model for dendritic Ca2+ accumulation in hippocampal pyramidal neurons based on fluorescence imaging measurements. Journal of Neurophysiology. 71: 1065-77. PMID 8201402 DOI: 10.1152/JN.1994.71.3.1065 |
0.745 |
|
| 1994 |
Jaffe DB, Fisher SA, Brown TH. Confocal laser scanning microscopy reveals voltage-gated calcium signals within hippocampal dendritic spines. Journal of Neurobiology. 25: 220-33. PMID 8195787 DOI: 10.1002/Neu.480250303 |
0.459 |
|
| 1994 |
Jaffe DB, Brown TH. Metabotropic glutamate receptor activation induces calcium waves within hippocampal dendrites. Journal of Neurophysiology. 72: 471-4. PMID 7965030 DOI: 10.1152/Jn.1994.72.1.471 |
0.396 |
|
| 1994 |
Jaffe DB, Brown TH. Confocal imaging of dendritic Ca2+ transients in hippocampal brain slices during simultaneous current- and voltage-clamp recording. Microscopy Research and Technique. 29: 279-89. PMID 7841500 DOI: 10.1002/Jemt.1070290404 |
0.445 |
|
| 1994 |
Spruston N, Jaffe DB, Johnston D. Dendritic attenuation of synaptic potentials and currents: the role of passive membrane properties. Trends in Neurosciences. 17: 161-6. PMID 7517596 DOI: 10.1016/0166-2236(94)90094-9 |
0.757 |
|
| 1993 |
Spruston N, Jaffe DB, Williams SH, Johnston D. Voltage- and space-clamp errors associated with the measurement of electrotonically remote synaptic events. Journal of Neurophysiology. 70: 781-802. PMID 8410172 DOI: 10.1152/JN.1993.70.2.781 |
0.763 |
|
| 1993 |
Ross WN, Miyakawa H, Lev-Ram V, Lasser-Ross N, Lisman J, Jaffe D, Johnston D. Dendritic excitability in CNS neurons: insights from dynamic calcium and sodium imaging in single cells. The Japanese Journal of Physiology. 43: S83-9. PMID 8271520 |
0.385 |
|
| 1992 |
Miyakawa H, Ross WN, Jaffe D, Callaway JC, Lasser-Ross N, Lisman JE, Johnston D. Synaptically activated increases in Ca2+ concentration in hippocampal CA1 pyramidal cells are primarily due to voltage-gated Ca2+ channels. Neuron. 9: 1163-73. PMID 1361128 DOI: 10.1016/0896-6273(92)90074-N |
0.718 |
|
| 1992 |
Jaffe DB, Johnston D, Lasser-Ross N, Lisman JE, Miyakawa H, Ross WN. The spread of Na+ spikes determines the pattern of dendritic Ca2+ entry into hippocampal neurons. Nature. 357: 244-6. PMID 1350327 DOI: 10.1038/357244a0 |
0.733 |
|
| 1992 |
Johnston D, Williams S, Jaffe D, Gray R. NMDA-receptor-independent long-term potentiation. Annual Review of Physiology. 54: 489-505. PMID 1314043 DOI: 10.1146/annurev.ph.54.030192.002421 |
0.705 |
|
| 1991 |
Aitken PG, Jaffe DB, Nadler JV. Cholecystokinin blocks some effects of kainic acid in CA3 region of hippocampal slices. Peptides. 12: 127-9. PMID 2052488 DOI: 10.1016/0196-9781(91)90178-R |
0.369 |
|
| 1990 |
Jaffe D, Johnston D. Induction of long-term potentiation at hippocampal mossy-fiber synapses follows a Hebbian rule Journal of Neurophysiology. 64: 948-960. PMID 2230936 DOI: 10.1152/JN.1990.64.3.948 |
0.704 |
|
| 1987 |
Jaffe DB, Aitken PG, Nadler JV. The effects of cholecystokinin and cholecystokinin antagonists on synaptic function in the CA1 region of the rat hippocampal slice. Brain Research. 415: 197-203. PMID 3040174 DOI: 10.1016/0006-8993(87)90288-5 |
0.392 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2017 |
Du X, Gao H, Jaffe D, Zhang H, Gamper N. M-type K(+) channels in peripheral nociceptive pathways. British Journal of Pharmacology. PMID 28800673 DOI: 10.1111/bph.13978 |
0.297 |
|
| 1989 |
Jaffe DB, Marks SS, Greenberg DA. Antagonist drug selectivity for radioligand binding sites on voltage-gated and N-methyl-D-aspartate receptor-gated Ca2+ channels. Neuroscience Letters. 105: 227-32. PMID 2562062 DOI: 10.1016/0304-3940(89)90042-6 |
0.247 |
|
| 1994 |
Brown TH, Jaffe DB. Calcium imaging in hippocampal neurons using confocal microscopy. Annals of the New York Academy of Sciences. 747: 313-24. PMID 7847680 DOI: 10.1111/J.1749-6632.1994.Tb44419.X |
0.237 |
|
| 2023 |
Hao H, Ramli R, Wang C, Liu C, Shah S, Mullen P, Lall V, Jones F, Shao J, Zhang H, Jaffe DB, Gamper N, Du X. Dorsal root ganglia control nociceptive input to the central nervous system. Plos Biology. 21: e3001958. PMID 36603052 DOI: 10.1371/journal.pbio.3001958 |
0.153 |
|
| 2023 |
Hurtado J, Rogers TF, Jaffe DB, Adams BA, Bangaru S, Garcia E, Capozzola T, Messmer T, Sharma P, Song G, Beutler N, He W, Dueker K, Musharrafieh R, Stubbington MJT, et al. Deep repertoire mining uncovers ultra-broad coronavirus neutralizing antibodies targeting multiple spike epitopes. Biorxiv : the Preprint Server For Biology. PMID 37034676 DOI: 10.1101/2023.03.28.534602 |
0.089 |
|
| 2022 |
Zhi L, Zhao J, Jaffe D, Chen Y, Wang N, Qin Q, Seifert EL, Li C, Zhang H. Measurement of Oxygen Consumption Rate in Acute Striatal Slices from Adult Mice. Journal of Visualized Experiments : Jove. PMID 35758711 DOI: 10.3791/63379 |
0.087 |
|
| 2018 |
Aneichyk T, Hendriks WT, Yadav R, Shin D, Gao D, Vaine CA, Collins RL, Domingo A, Currall B, Stortchevoi A, Multhaupt-Buell T, Penney EB, Cruz L, Dhakal J, Brand H, ... ... Jaffe D, et al. Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly. Cell. 172: 897-909.e21. PMID 29474918 DOI: 10.1016/J.Cell.2018.02.011 |
0.072 |
|
| 2007 |
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature. 448: 553-60. PMID 17603471 DOI: 10.1038/Nature06008 |
0.066 |
|
| 2003 |
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422: 859-68. PMID 12712197 DOI: 10.1038/Nature01554 |
0.066 |
|
| 1992 |
Jaffe DB. Local geometry of smooth curves passing through rational double points Mathematische Annalen. 294: 645-660. DOI: 10.1007/BF01934346 |
0.065 |
|
| 2009 |
Chiang DY, Getz G, Jaffe DB, O'Kelly MJ, Zhao X, Carter SL, Russ C, Nusbaum C, Meyerson M, Lander ES. High-resolution mapping of copy-number alterations with massively parallel sequencing. Nature Methods. 6: 99-103. PMID 19043412 DOI: 10.1038/Nmeth.1276 |
0.059 |
|
| 2008 |
Dawn ME, Deng AC, Petrali J, Wessely C, Jaffe D, Gaspari AA. Familial cutaneous collagenoma. Skinmed. 7: 43-5. PMID 18174804 |
0.058 |
|
| 2014 |
Paryavi E, Yanko M, Jaffe D, Nimmgadda N, Nouveau J, Schiavone J, Gilotra M, Gelb D, Ludwig SC. Implantable direct current spinal fusion stimulators do not decrease implant-related infections in a rabbit model. American Journal of Orthopedics (Belle Mead, N.J.). 43: E98-E104. PMID 24839636 |
0.054 |
|
| 1993 |
Jaffe DB. Extensions of Étale by connected group spaces Transactions of the American Mathematical Society. 335: 155-173. DOI: 10.1090/S0002-9947-1993-1150015-4 |
0.052 |
|
| 2008 |
Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB, Gnirke A, Jaenisch R, Lander ES. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature. 454: 766-70. PMID 18600261 DOI: 10.1038/Nature07107 |
0.051 |
|
| 2013 |
Cibulskis K, Lawrence MS, Carter SL, Sivachenko A, Jaffe D, Sougnez C, Gabriel S, Meyerson M, Lander ES, Getz G. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nature Biotechnology. 31: 213-9. PMID 23396013 DOI: 10.1038/Nbt.2514 |
0.051 |
|
| 2010 |
Berger MF, Levin JZ, Vijayendran K, Sivachenko A, Adiconis X, Maguire J, Johnson LA, Robinson J, Verhaak RG, Sougnez C, Onofrio RC, Ziaugra L, Cibulskis K, Laine E, Barretina J, ... ... Jaffe DB, et al. Integrative analysis of the melanoma transcriptome. Genome Research. 20: 413-27. PMID 20179022 DOI: 10.1101/Gr.103697.109 |
0.049 |
|
| 2007 |
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, ... ... Jaffe DB, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Research. 17: 760-74. PMID 17567995 DOI: 10.1101/Gr.6034307 |
0.049 |
|
| 1991 |
Jaffe DB. Smooth curves on a cone which pass through its vertex Manuscripta Mathematica. 73: 187-205. DOI: 10.1007/BF02567638 |
0.048 |
|
| 2009 |
Nusbaum C, Ohsumi TK, Gomez J, Aquadro J, Victor TC, Warren RM, Hung DT, Birren BW, Lander ES, Jaffe DB. Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. Nature Methods. 6: 67-9. PMID 19079253 DOI: 10.1038/Nmeth.1286 |
0.047 |
|
| 2002 |
Batzoglou S, Jaffe DB, Stanley K, Butler J, Gnerre S, Mauceli E, Berger B, Mesirov JP, Lander ES. ARACHNE: a whole-genome shotgun assembler. Genome Research. 12: 177-89. PMID 11779843 DOI: 10.1101/gr.208902 |
0.047 |
|
| 2012 |
Williams LJ, Tabbaa DG, Li N, Berlin AM, Shea TP, Maccallum I, Lawrence MS, Drier Y, Getz G, Young SK, Jaffe DB, Nusbaum C, Gnirke A. Paired-end sequencing of Fosmid libraries by Illumina. Genome Research. 22: 2241-9. PMID 22800726 DOI: 10.1101/gr.138925.112 |
0.045 |
|
| 2006 |
Santos SA, Uriel AJ, Park JS, Lucas J, Carriero D, Jaffe D, Dieterich DT. Effect of switching to tenofovir with emtricitabine in patients with chronic hepatitis B failing to respond to an adefovir-containing regimen. European Journal of Gastroenterology & Hepatology. 18: 1247-53. PMID 17099372 DOI: 10.1097/01.meg.0000243877.17444.5e |
0.043 |
|
| 2013 |
Ross MG, Russ C, Costello M, Hollinger A, Lennon NJ, Hegarty R, Nusbaum C, Jaffe DB. Characterizing and measuring bias in sequence data. Genome Biology. 14: R51. PMID 23718773 DOI: 10.1186/gb-2013-14-5-r51 |
0.043 |
|
| 2021 |
Jaffe D, Costales T, Jauregui JJ, Koenig S, Weir TB, Greenwell P, Christian M, Henn RF. Current surgical practice for septic arthritis of the knee in the United States. Journal of Orthopaedics. 25: 88-92. PMID 33994704 DOI: 10.1016/j.jor.2021.04.005 |
0.041 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Jaffe DB, ... ... Jaffe DB, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.041 |
|
| 2009 |
Maccallum I, Przybylski D, Gnerre S, Burton J, Shlyakhter I, Gnirke A, Malek J, McKernan K, Ranade S, Shea TP, Williams L, Young S, Nusbaum C, Jaffe DB. ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Genome Biology. 10: R103. PMID 19796385 DOI: 10.1186/Gb-2009-10-10-R103 |
0.041 |
|
| 1995 |
Jaffe DB. Applications of iterated curve blow-up to set theoretic complete intersections in P3 Journal Fur Die Reine Und Angewandte Mathematik. 1995: 1-46. DOI: 10.1515/crll.1995.464.1 |
0.041 |
|
| 2007 |
Volkman SK, Sabeti PC, DeCaprio D, Neafsey DE, Schaffner SF, Milner DA, Daily JP, Sarr O, Ndiaye D, Ndir O, Mboup S, Duraisingh MT, Lukens A, Derr A, Stange-Thomann N, ... ... Jaffe DB, et al. A genome-wide map of diversity in Plasmodium falciparum. Nature Genetics. 39: 113-9. PMID 17159979 DOI: 10.1038/Ng1930 |
0.04 |
|
| 2007 |
Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, ... ... Jaffe D, et al. Genome sequence of Aedes aegypti, a major arbovirus vector. Science (New York, N.Y.). 316: 1718-23. PMID 17510324 DOI: 10.1126/Science.1138878 |
0.04 |
|
| 2011 |
Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... Jaffe DB, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111 |
0.039 |
|
| 2005 |
Deng A, Petrali J, Jaffe D, Sina B, Gaspari A. Benign cutaneous pseudoglandular schwannoma: a case report. The American Journal of Dermatopathology. 27: 432-5. PMID 16148415 DOI: 10.1097/01.dad.0000175534.73110.4e |
0.038 |
|
| 2006 |
Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, ... ... Jaffe DB, et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature. 444: 97-101. PMID 17080091 DOI: 10.1038/Nature05248 |
0.038 |
|
| 2011 |
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, ... ... Jaffe DB, et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 478: 476-82. PMID 21993624 DOI: 10.1038/Nature10530 |
0.037 |
|
| 2022 |
Jaffe DB, Shahi P, Adams BA, Chrisman AM, Finnegan PM, Raman N, Royall AE, Tsai F, Vollbrecht T, Reyes DS, Hepler NL, McDonnell WJ. Functional antibodies exhibit light chain coherence. Nature. PMID 36289331 DOI: 10.1038/s41586-022-05371-z |
0.037 |
|
| 2013 |
Kirby A, Gnirke A, Jaffe DB, Barešová V, Pochet N, Blumenstiel B, Ye C, Aird D, Stevens C, Robinson JT, Cabili MN, Gat-Viks I, Kelliher E, Daza R, DeFelice M, et al. Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing. Nature Genetics. 45: 299-303. PMID 23396133 DOI: 10.1038/Ng.2543 |
0.036 |
|
| 2009 |
Gnirke A, Melnikov A, Maguire J, Rogov P, LeProust EM, Brockman W, Fennell T, Giannoukos G, Fisher S, Russ C, Gabriel S, Jaffe DB, Lander ES, Nusbaum C. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nature Biotechnology. 27: 182-9. PMID 19182786 DOI: 10.1038/nbt.1523 |
0.035 |
|
| 2000 |
Bouyukliev I, Jaffe DB, Vavrek V. The smallest length of eight-dimensional binary linear codes with prescribed minimum distance Ieee Transactions On Information Theory. 46: 1539-1544. DOI: 10.1109/18.850690 |
0.035 |
|
| 2016 |
Love RR, Weisenfeld NI, Jaffe DB, Besansky NJ, Neafsey DE. Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly. Bmc Genomics. 17: 187. PMID 26944054 DOI: 10.1186/S12864-016-2531-7 |
0.034 |
|
| 2017 |
Jaffe D, Costales T, Greenwell P, Christian M, Henn IR. Methicillin-Resistant Staphylococcus aureus Infection Is a Risk Factor for Unplanned Return to the Operating Room in the Surgical Treatment of a Septic Knee. The Journal of Knee Surgery. PMID 28249348 DOI: 10.1055/s-0037-1598079 |
0.033 |
|
| 2010 |
Cairns CB, Maier RV, Adeoye O, Baptiste D, Barsan WG, Blackbourne L, Burd R, Carpenter C, Chang D, Cioffi W, Cornwell E, Dean JM, Dyer C, Jaffe D, Manley G, et al. NIH Roundtable on Emergency Trauma Research. Annals of Emergency Medicine. 56: 538-50. PMID 21036294 DOI: 10.1016/J.Annemergmed.2010.05.029 |
0.033 |
|
| 2014 |
Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, ... ... Jaffe DB, et al. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 513: 375-81. PMID 25186727 DOI: 10.1038/Nature13726 |
0.032 |
|
| 2006 |
Taylor TD, Noguchi H, Totoki Y, Toyoda A, Kuroki Y, Dewar K, Lloyd C, Itoh T, Takeda T, Kim DW, She X, Barlow KF, Bloom T, Bruford E, Chang JL, ... ... Jaffe DB, et al. Human chromosome 11 DNA sequence and analysis including novel gene identification. Nature. 440: 497-500. PMID 16554811 DOI: 10.1038/Nature04632 |
0.032 |
|
| 2019 |
Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, García-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, ... ... Jaffe D, et al. Genomic architecture and introgression shape a butterfly radiation. Science (New York, N.Y.). 366: 594-599. PMID 31672890 DOI: 10.1126/Science.Aaw2090 |
0.031 |
|
| 2003 |
Jaffe DB, Butler J, Gnerre S, Mauceli E, Lindblad-Toh K, Mesirov JP, Zody MC, Lander ES. Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Research. 13: 91-6. PMID 12529310 DOI: 10.1101/Gr.828403 |
0.031 |
|
| 2012 |
Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, Johnson J, Swofford R, Pirun M, Zody MC, White S, Birney E, Searle S, Schmutz J, Grimwood J, Dickson MC, ... ... Jaffe DB, et al. The genomic basis of adaptive evolution in threespine sticklebacks. Nature. 484: 55-61. PMID 22481358 DOI: 10.1038/Nature10944 |
0.031 |
|
| 2008 |
Butler J, MacCallum I, Kleber M, Shlyakhter IA, Belmonte MK, Lander ES, Nusbaum C, Jaffe DB. ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Research. 18: 810-20. PMID 18340039 DOI: 10.1101/gr.7337908 |
0.03 |
|
| 2008 |
Brockman W, Alvarez P, Young S, Garber M, Giannoukos G, Lee WL, Russ C, Lander ES, Nusbaum C, Jaffe DB. Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Research. 18: 763-70. PMID 18212088 DOI: 10.1101/gr.070227.107 |
0.029 |
|
| 2005 |
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 438: 803-19. PMID 16341006 DOI: 10.1038/Nature04338 |
0.029 |
|
| 2005 |
Hitte C, Madeoy J, Kirkness EF, Priat C, Lorentzen TD, Senger F, Thomas D, Derrien T, Ramirez C, Scott C, Evanno G, Pullar B, Cadieu E, Oza V, Lourgant K, ... Jaffe DB, et al. Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping. Nature Reviews. Genetics. 6: 643-8. PMID 16012527 DOI: 10.1038/Nrg1658 |
0.029 |
|
| 1997 |
Jaffe DB. Coherent functors, with application to torsion in the picard group Transactions of the American Mathematical Society. 349: 481-527. |
0.028 |
|
| 2017 |
Weisenfeld NI, Kumar V, Shah P, Church DM, Jaffe DB. Direct determination of diploid genome sequences. Genome Research. PMID 28381613 DOI: 10.1101/Gr.214874.116 |
0.028 |
|
| 2010 |
Lennon NJ, Lintner RE, Anderson S, Alvarez P, Barry A, Brockman W, Daza R, Erlich RL, Giannoukos G, Green L, Hollinger A, Hoover CA, Jaffe DB, Juhn F, McCarthy D, et al. A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454. Genome Biology. 11: R15. PMID 20137071 DOI: 10.1186/Gb-2010-11-2-R15 |
0.028 |
|
| 1999 |
Jaffe DB. New binary linear codes which are dual transforms of good codes Ieee Transactions On Information Theory. 45: 2136-2137. DOI: 10.1109/18.782159 |
0.028 |
|
| 2006 |
Zody MC, Garber M, Sharpe T, Young SK, Rowen L, O'Neill K, Whittaker CA, Kamal M, Chang JL, Cuomo CA, Dewar K, FitzGerald MG, Kodira CD, Madan A, Qin S, ... ... Jaffe DB, et al. Analysis of the DNA sequence and duplication history of human chromosome 15. Nature. 440: 671-5. PMID 16572171 DOI: 10.1038/Nature04601 |
0.028 |
|
| 2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Jaffe DB, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.028 |
|
| 2000 |
Jaffe DB. Optimal binary linear codes of length ≤ 30 Discrete Mathematics. 223: 135-155. |
0.027 |
|
| 1998 |
Jaffe DB. Optimal binary linear codes of length ≤30 Ieee International Symposium On Information Theory - Proceedings. 17. DOI: 10.1109/ISIT.1998.708596 |
0.027 |
|
| 2012 |
Calvo SE, Compton AG, Hershman SG, Lim SC, Lieber DS, Tucker EJ, Laskowski A, Garone C, Liu S, Jaffe DB, Christodoulou J, Fletcher JM, Bruno DL, Goldblatt J, Dimauro S, et al. Molecular diagnosis of infantile mitochondrial disease with targeted next-generation sequencing. Science Translational Medicine. 4: 118ra10. PMID 22277967 DOI: 10.1126/Scitranslmed.3003310 |
0.027 |
|
| 2013 |
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Jaffe DB, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10 |
0.026 |
|
| 2011 |
Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, ... ... Jaffe DB, et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proceedings of the National Academy of Sciences of the United States of America. 108: 1513-8. PMID 21187386 DOI: 10.1073/Pnas.1017351108 |
0.025 |
|
| 2005 |
Vinson JP, Jaffe DB, O'Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N, Satou Y, Nusbaum C, Birren B, Galagan JE, Lander ES. Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. Genome Research. 15: 1127-35. PMID 16077012 DOI: 10.1101/Gr.3722605 |
0.025 |
|
| 1998 |
Jaffe DB, Tonchev VD. Computing Linear Codes and Unitals Designs, Codes, and Cryptography. 14: 39-52. |
0.025 |
|
| 2020 |
Jaffe D. Restoration of Extension of the Great Toe After an Untreated, Retracted Extensor Hallucis Longus Rupture: A Case Report. Jbjs Case Connector. 9: e0348. PMID 31609752 DOI: 10.2106/JBJS.CC.18.00348 |
0.024 |
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| 2013 |
Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, ... ... Jaffe DB, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027 |
0.024 |
|
| 2006 |
Nusbaum C, Mikkelsen TS, Zody MC, Asakawa S, Taudien S, Garber M, Kodira CD, Schueler MG, Shimizu A, Whittaker CA, Chang JL, Cuomo CA, Dewar K, FitzGerald MG, Yang X, ... ... Jaffe DB, et al. DNA sequence and analysis of human chromosome 8. Nature. 439: 331-5. PMID 16421571 DOI: 10.1038/nature04406 |
0.023 |
|
| 1989 |
Jaffe DB. On set theoretic complete intersections in ℙ3 Mathematische Annalen. 285: 700. DOI: 10.1007/BF01452054 |
0.023 |
|
| 2005 |
Nusbaum C, Zody MC, Borowsky ML, Kamal M, Kodira CD, Taylor TD, Whittaker CA, Chang JL, Cuomo CA, Dewar K, FitzGerald MG, Yang X, Abouelleil A, Allen NR, Anderson S, ... ... Jaffe DB, et al. DNA sequence and analysis of human chromosome 18. Nature. 437: 551-5. PMID 16177791 DOI: 10.1038/nature03983 |
0.023 |
|
| 2018 |
Hulse-Kemp AM, Maheshwari S, Stoffel K, Hill TA, Jaffe D, Williams SR, Weisenfeld N, Ramakrishnan S, Kumar V, Shah P, Schatz MC, Church DM, Van Deynze A. Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library. Horticulture Research. 5: 4. PMID 29423234 DOI: 10.1038/S41438-017-0011-0 |
0.023 |
|
| 2006 |
Zody MC, Garber M, Adams DJ, Sharpe T, Harrow J, Lupski JR, Nicholson C, Searle SM, Wilming L, Young SK, Abouelleil A, Allen NR, Bi W, Bloom T, Borowsky ML, ... ... Jaffe DB, et al. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. Nature. 440: 1045-9. PMID 16625196 DOI: 10.1038/Nature04689 |
0.022 |
|
| 2015 |
Gilotra M, Nguyen T, Jaffe D, Sterling R. Dilute betadine lavage reduces implant-related bacterial burden in a rabbit knee prosthetic infection model. American Journal of Orthopedics (Belle Mead, N.J.). 44: E38-41. PMID 25658080 |
0.022 |
|
| 1997 |
Jaffe DB. A brief tour of split linear programming Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1255: 165-173. DOI: 10.1007/3-540-63163-1_13 |
0.022 |
|
| 2021 |
Brodsky JW, Jaffe D, Pao A, Vier D, Taniguchi A, Daoud Y, Coleman S, Scott DJ. Long-term Functional Results of Total Ankle Arthroplasty in Stiff Ankles. Foot & Ankle International. 1071100720977847. PMID 33554643 DOI: 10.1177/1071100720977847 |
0.021 |
|
| 2011 |
Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biology. 12: R18. PMID 21338519 DOI: 10.1186/gb-2011-12-2-r18 |
0.021 |
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| 2002 |
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Jaffe DB, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262 |
0.021 |
|
| 2012 |
Ribeiro FJ, Przybylski D, Yin S, Sharpe T, Gnerre S, Abouelleil A, Berlin AM, Montmayeur A, Shea TP, Walker BJ, Young SK, Russ C, Nusbaum C, MacCallum I, Jaffe DB. Finished bacterial genomes from shotgun sequence data. Genome Research. 22: 2270-7. PMID 22829535 DOI: 10.1101/Gr.141515.112 |
0.019 |
|
| 2016 |
Thiruvengadam NR, Forde KA, Ma GK, Ahmad N, Chandrasekhara V, Ginsberg GG, Ho IK, Jaffe D, Panganamamula KV, Kochman ML. Rectal Indomethacin Reduces Pancreatitis in High- and Low-Risk Patients Undergoing Endoscopic Retrograde Cholangiopancreatography. Gastroenterology. PMID 27215656 DOI: 10.1053/j.gastro.2016.04.048 |
0.019 |
|
| 2014 |
Weisenfeld NI, Yin S, Sharpe T, Lau B, Hegarty R, Holmes L, Sogoloff B, Tabbaa D, Williams L, Russ C, Nusbaum C, Lander ES, MacCallum I, Jaffe DB. Comprehensive variation discovery in single human genomes. Nature Genetics. 46: 1350-5. PMID 25326702 DOI: 10.1038/Ng.3121 |
0.019 |
|
| 2005 |
Margulies EH, Vinson JP, Miller W, Jaffe DB, Lindblad-Toh K, Chang JL, Green ED, Lander ES, Mullikin JC, Clamp M. An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. Proceedings of the National Academy of Sciences of the United States of America. 102: 4795-800. PMID 15778292 DOI: 10.1073/Pnas.0409882102 |
0.019 |
|
| 1988 |
Jaffe DB. Space curves which are the intersection of a cone with another surface Duke Mathematical Journal. 57: 859-876. DOI: 10.1215/S0012-7094-88-05738-9 |
0.019 |
|
| 2001 |
Bouyukliev I, Jaffe DB. Optimal binary linear codes of dimension at most seven Discrete Mathematics. 226: 51-70. |
0.018 |
|
| 2017 |
Jaffe D, Christian MW, Weber A, Henn RF. Incarceration of the Posterior Tibial Tendon in an Isolated Comminuted Medial Malleolus Fracture. The Journal of Foot and Ankle Surgery : Official Publication of the American College of Foot and Ankle Surgeons. PMID 28697881 DOI: 10.1053/j.jfas.2017.05.016 |
0.018 |
|
| 1989 |
Arapura D, Jaffe DB. On kodaira vanishing for singular varieties Proceedings of the American Mathematical Society. 105: 911-916. DOI: 10.1090/S0002-9939-1989-0952313-8 |
0.018 |
|
| 2004 |
Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature. 431: 946-57. PMID 15496914 DOI: 10.1038/Nature03025 |
0.018 |
|
| 2017 |
Jaffe D, Vier D, Kane J, Kozanek M, Royer C. Rate of Neurologic Injury Following Lateralizing Calcaneal Osteotomy Performed Through a Medial Approach. Foot & Ankle International. 1071100717728678. PMID 28863729 DOI: 10.1177/1071100717728678 |
0.017 |
|
| 1996 |
Guralnick R, Jaffe DB, Raskind W, Wiegand R. On the Picard group: Torsion and the Kernel induced by a faithfully flat map Journal of Algebra. 183: 420-455. DOI: 10.1006/Jabr.1996.0228 |
0.016 |
|
| 2016 |
Jaffe D, Kim E, Aboulafia A. Erosive Breast Cancer Metastasis to the Ankle: A Case Report. The Journal of Foot and Ankle Surgery : Official Publication of the American College of Foot and Ankle Surgeons. 55: 1297-1301. PMID 26387056 DOI: 10.1053/j.jfas.2015.08.003 |
0.016 |
|
| 2011 |
Clark BB, Jaffe D, Henn RF, Lovering RM. Evaluation and imaging of an untreated grade III hamstring tear: a case report. Clinical Orthopaedics and Related Research. 469: 3248-52. PMID 21850562 DOI: 10.1007/s11999-011-2027-3 |
0.016 |
|
| 2018 |
Jaffe D, Vier D, Royer C. Unipolar allograft reconstruction for post-traumatic avascular necrosis of the distal tibia: A review of the literature, technique, and case series. Foot and Ankle Surgery : Official Journal of the European Society of Foot and Ankle Surgeons. 25: 425-433. PMID 30321950 DOI: 10.1016/j.fas.2018.04.005 |
0.015 |
|
| 2017 |
Jaffe D, Costales T, Greenwell P, Christian M, Henn RF. Erratum: Methicillin-Resistant Staphylococcus aureus Infection Is a Risk Factor for Unplanned Return to the Operating Room in the Surgical Treatment of a Septic Knee. The Journal of Knee Surgery. PMID 28772330 DOI: 10.1055/s-0037-1606193 |
0.014 |
|
| 2009 |
Gnerre S, Lander ES, Lindblad-Toh K, Jaffe DB. Assisted assembly: how to improve a de novo genome assembly by using related species. Genome Biology. 10: R88. PMID 19712469 DOI: 10.1186/gb-2009-10-8-r88 |
0.011 |
|
| 2018 |
Weisenfeld NI, Kumar V, Shah P, Church DM, Jaffe DB. Corrigendum: Direct determination of diploid genome sequences. Genome Research. 28: 606.1. PMID 29610250 DOI: 10.1101/Gr.235812.118 |
0.011 |
|
| 2009 |
Scalia K, Jaffe D. Surveying providers on IT. Behavioral Healthcare. 29: 16. PMID 19354124 |
0.01 |
|
| 2007 |
Jaffe DB. Rehnquist clerks speak out [7] Aba Journal. 93: 8. |
0.01 |
|
| 2004 |
Bu-Ghanim M, Suriawinata A, Killackey M, Schwartz ME, Jaffe D, Fiel MI. Invasive colloid carcinoma arising from intraductal papillary neoplasm in a 50-year-old woman with primary sclerosing cholangitis. Seminars in Liver Disease. 24: 209-13. PMID 15192793 DOI: 10.1055/s-2004-828897 |
0.01 |
|
| 2002 |
Isaacman DJ, Poirier MP, Baker MD, Jaffe D, Krug S. Academic dilemmas. Pediatric Emergency Care. 18: 451-5. PMID 12488841 DOI: 10.1097/00006565-200212000-00012 |
0.01 |
|
| 1997 |
Jaffe DB, Ruberman D. A sextic surface cannot have 66 nodes Journal of Algebraic Geometry. 6: 151-168. |
0.01 |
|
| 1996 |
Jaffe DB. Functorial structure of units in a tensor product Transactions of the American Mathematical Society. 348: 4339-4353. |
0.01 |
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