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Matthew J. Cuneo, Ph.D. - Publications

Affiliations: 
2007 Duke University, Durham, NC 
Area:
General Biophysics
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Shukla S, Myles DA, Cuneo MJ. Mapping periplasmic binding protein oligosaccharide recognition with neutron crystallography. Scientific Reports. 12: 17647. PMID 36271099 DOI: 10.1038/s41598-022-20542-8  0.413
2019 Park J, Selvaraj B, McShan AC, Boyken SE, Wei KY, Oberdorfer G, DeGrado W, Sgourakis NG, Cuneo MJ, Myles DA, Baker D. De novo design of a homo-trimeric amantadine-binding protein. Elife. 8. PMID 31854299 DOI: 10.7554/Elife.47839  0.48
2019 Saxena R, Stanley CB, Kumar P, Cuneo MJ, Patil D, Jha J, Weiss KL, Chattoraj DK, Crooke E. A nucleotide-dependent oligomerization of the Escherichia coli replication initiator DnaA requires residue His136 for remodeling of the chromosomal origin. Nucleic Acids Research. PMID 31665475 DOI: 10.1093/Nar/Gkz939  0.447
2019 Lu X, Selvaraj B, Ghimire-Rijal S, Orf GS, Meilleur F, Blankenship RE, Cuneo MJ, Myles DAA. Neutron and X-ray analysis of the Fenna-Matthews-Olson photosynthetic antenna complex from Prosthecochloris aestuarii. Acta Crystallographica. Section F, Structural Biology Communications. 75: 171-175. PMID 30839291 DOI: 10.1107/S2053230X19000724  0.314
2019 Park J, Selvaraj B, McShan AC, Boyken SE, Wei KY, Oberdorfer G, DeGrado W, Sgourakis NG, Cuneo MJ, Myles DA, Baker D. Author response: De novo design of a homo-trimeric amantadine-binding protein Elife. DOI: 10.7554/Elife.47839.Sa2  0.448
2019 Pierce J, Crow L, Cuneo M, Edwards M, Herwig K, Jennings A, Jones A, Li L, Meilleur F, Myles D, Robertson L, Standaert R, Wonder A, Zhao J. A prototype system for dynamically polarized neutron protein crystallography Nuclear Instruments and Methods in Physics Research Section a: Accelerators, Spectrometers, Detectors and Associated Equipment. 940: 430-434. DOI: 10.1016/J.Nima.2019.06.023  0.312
2019 Kumar P, Cuneo MJ, Selvaraj B, Serpersu EH. Molecular Basis of Ligand Selectivity in Aminoglycoside Acetyltransferases Biophysical Journal. 116: 47a. DOI: 10.1016/J.Bpj.2018.11.298  0.32
2018 Kumar P, Selvaraj B, Serpersu EH, Cuneo MJ. Encoding of promiscuity in an aminoglycoside acetyltransferase. Journal of Medicinal Chemistry. PMID 30347146 DOI: 10.2210/Pdb6Mb6/Pdb  0.371
2018 Shukla S, Bafna K, Gullett C, Myles DAA, Agarwal PK, Cuneo MJ. Differential substrate recognition by maltose binding proteins influenced by structure and dynamics. Biochemistry. PMID 30204415 DOI: 10.1021/Acs.Biochem.8B00783  0.52
2018 Kovalevsky A, Aggarwal M, Velazquez H, Cuneo MJ, Blakeley MP, Weiss KL, Smith JC, Fisher SZ, McKenna R. "To Be or Not to Be" Protonated: Atomic Details of Human Carbonic Anhydrase-Clinical Drug Complexes by Neutron Crystallography and Simulation. Structure (London, England : 1993). PMID 29429876 DOI: 10.1016/J.Str.2018.01.006  0.334
2017 Hayes DG, Ye R, Dunlap RN, Cuneo MJ, Pingali SV, O'Neill HM, Urban VS. Protein extraction into the bicontinuous microemulsion phase of a Water/SDS/pentanol/dodecane winsor-III system: Effect on nanostructure and protein conformation. Colloids and Surfaces. B, Biointerfaces. 160: 144-153. PMID 28922633 DOI: 10.1016/J.Colsurfb.2017.09.005  0.363
2017 Li L, Ghimire-Rijal S, Lucas SL, Stanley CB, Wright E, Agarwal PK, Myles DAA, Cuneo MJ. A periplasmic binding protein dimer has a second allosteric event tied to ligand binding. Biochemistry. PMID 28876049 DOI: 10.1021/Acs.Biochem.7B00657  0.53
2017 Li L, Shukla S, Meilleur F, Standaert RF, Pierce J, Myles DAA, Cuneo MJ. Neutron crystallographic studies of T4 lysozyme at cryogenic temperature. Protein Science : a Publication of the Protein Society. PMID 28707382 DOI: 10.1002/Pro.3231  0.351
2017 Bacik JP, Mekasha S, Forsberg Z, Kovalevsky AY, Vaaje-Kolstad G, Eijsink VGH, Nix JC, Coates L, Cuneo MJ, Unkefer CJ, Chen JC. Neutron and Atomic Resolution X-ray Structures of a Lytic Polysaccharide Monooxygenase Reveal Copper-Mediated Dioxygen Binding and Evidence for N-Terminal Deprotonation. Biochemistry. PMID 28481095 DOI: 10.1021/Acs.Biochem.7B00019  0.356
2016 Saer R, Orf GS, Lu X, Zhang H, Cuneo MJ, Myles DA, Blankenship RE. Perturbation Of Bacteriochlorophyll Molecules In Fenna-Matthews-Olson Protein Complexes Through Mutagenesis Of Cysteine Residues. Biochimica Et Biophysica Acta. PMID 27114180 DOI: 10.1016/J.Bbabio.2016.04.007  0.344
2016 Moon AF, Krahn JM, Lu X, Cuneo MJ, Pedersen LC. Structural characterization of the virulence factor Sda1 nuclease from Streptococcus pyogenes. Nucleic Acids Research. PMID 26969731 DOI: 10.1093/Nar/Gkw143  0.335
2015 Bacik JP, Mekasha S, Forsberg Z, Kovalevsky A, Nix JC, Cuneo MJ, Coates L, Vaaje-Kolstad G, Chen JC, Eijsink VG, Unkefer CJ. Neutron and high-resolution room-temperature X-ray data collection from crystallized lytic polysaccharide monooxygenase. Acta Crystallographica. Section F, Structural Biology Communications. 71: 1448-52. PMID 26527275 DOI: 10.1107/S2053230X15019743  0.304
2015 Freudenthal BD, Beard WA, Cuneo MJ, Dyrkheeva NS, Wilson SH. Capturing snapshots of APE1 processing DNA damage. Nature Structural & Molecular Biology. PMID 26458045 DOI: 10.1038/Nsmb.3105  0.308
2015 Jiang J, Zhang H, Lu X, Lu Y, Cuneo MJ, O'Neill HM, Urban V, Lo CS, Blankenship RE. Oligomerization state and pigment binding strength of the peridinin-Chl a-protein. Febs Letters. PMID 26241331 DOI: 10.1016/J.Febslet.2015.07.039  0.35
2014 Gabel SA, Smith CE, Cuneo MJ, Mueller GA, Kirby TW, DeRose EF, Krahn JM, London RE. Characterization of the redox transition of the XRCC1 N-terminal domain. Structure (London, England : 1993). 22: 1754-63. PMID 25456813 DOI: 10.1016/J.Str.2014.09.012  0.364
2014 Ghimire-Rijal S, Lu X, Myles DA, Cuneo MJ. Duplication of genes in an ATP-binding cassette transport system increases dynamic range while maintaining ligand specificity. The Journal of Biological Chemistry. 289: 30090-100. PMID 25210043 DOI: 10.1074/Jbc.M114.590992  0.529
2014 Bodenheimer AM, Cuneo MJ, Swartz PD, He J, O'Neill HM, Myles DA, Evans BR, Meilleur F. Crystallization and preliminary X-ray diffraction analysis of Hypocrea jecorina Cel7A in two new crystal forms. Acta Crystallographica. Section F, Structural Biology Communications. 70: 773-6. PMID 24915091 DOI: 10.1107/S2053230X14008851  0.31
2014 Zheng X, Pedersen LC, Gabel SA, Mueller GA, Cuneo MJ, DeRose EF, Krahn JM, London RE. Selective unfolding of one Ribonuclease H domain of HIV reverse transcriptase is linked to homodimer formation. Nucleic Acids Research. 42: 5361-77. PMID 24574528 DOI: 10.1093/Nar/Gku143  0.319
2013 Munshi P, Stanley CB, Ghimire-Rijal S, Lu X, Myles DA, Cuneo MJ. Molecular details of ligand selectivity determinants in a promiscuous β-glucan periplasmic binding protein. Bmc Structural Biology. 13: 18. PMID 24090243 DOI: 10.1186/1472-6807-13-18  0.545
2011 Loeffler PA, Cuneo MJ, Mueller GA, DeRose EF, Gabel SA, London RE. Structural studies of the PARP-1 BRCT domain. Bmc Structural Biology. 11: 37. PMID 21967661 DOI: 10.1186/1472-6807-11-37  0.342
2011 Cuneo MJ, Gabel SA, Krahn JM, Ricker MA, London RE. The structural basis for partitioning of the XRCC1/DNA ligase III-α BRCT-mediated dimer complexes. Nucleic Acids Research. 39: 7816-27. PMID 21652643 DOI: 10.1093/Nar/Gkr419  0.373
2011 Antunes MS, Morey KJ, Smith JJ, Albrecht KD, Bowen TA, Zdunek JK, Troupe JF, Cuneo MJ, Webb CT, Hellinga HW, Medford JI. Programmable ligand detection system in plants through a synthetic signal transduction pathway. Plos One. 6: e16292. PMID 21283542 DOI: 10.1371/Journal.Pone.0016292  0.647
2011 Midon M, Schäfer P, Pingoud A, Ghosh M, Moon AF, Cuneo MJ, London RE, Meiss G. Mutational and biochemical analysis of the DNA-entry nuclease EndA from Streptococcus pneumoniae. Nucleic Acids Research. 39: 623-34. PMID 20846957 DOI: 10.1093/Nar/Gkq802  0.314
2010 Mueller GA, Gosavi RA, Krahn JM, Edwards LL, Cuneo MJ, Glesner J, Pomés A, Chapman MD, London RE, Pedersen LC. Der p 5 crystal structure provides insight into the group 5 dust mite allergens. The Journal of Biological Chemistry. 285: 25394-401. PMID 20534590 DOI: 10.1074/Jbc.M110.128306  0.438
2010 Cuneo MJ, London RE. Oxidation state of the XRCC1 N-terminal domain regulates DNA polymerase beta binding affinity. Proceedings of the National Academy of Sciences of the United States of America. 107: 6805-10. PMID 20351257 DOI: 10.1073/Pnas.0914077107  0.334
2010 McCormack T, Petrovich RM, Mercier KA, DeRose EF, Cuneo MJ, Williams J, Johnson KL, Lamb PW, London RE, Yakel JL. Identification and functional characterization of a novel acetylcholine-binding protein from the marine annelid Capitella teleta. Biochemistry. 49: 2279-87. PMID 20136097 DOI: 10.1021/Bi902023Y  0.46
2009 Cuneo MJ, Beese LS, Hellinga HW. Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold. The Journal of Biological Chemistry. 284: 33217-23. PMID 19801540 DOI: 10.1074/Jbc.M109.041624  0.736
2009 Cuneo MJ, Changela A, Beese LS, Hellinga HW. Structural adaptations that modulate monosaccharide, disaccharide, and trisaccharide specificities in periplasmic maltose-binding proteins. Journal of Molecular Biology. 389: 157-66. PMID 19361522 DOI: 10.1016/J.Jmb.2009.04.008  0.736
2008 Cuneo MJ, Beese LS, Hellinga HW. Ligand-induced conformational changes in a thermophilic ribose-binding protein. Bmc Structural Biology. 8: 50. PMID 19019243 DOI: 10.1186/1472-6807-8-50  0.718
2008 Cuneo MJ, Changela A, Miklos AE, Beese LS, Krueger JK, Hellinga HW. Structural analysis of a periplasmic binding protein in the tripartite ATP-independent transporter family reveals a tetrameric assembly that may have a role in ligand transport. The Journal of Biological Chemistry. 283: 32812-20. PMID 18723845 DOI: 10.1074/Jbc.M803595200  0.731
2008 Cuneo MJ, Tian Y, Allert M, Hellinga HW. The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog. Bmc Structural Biology. 8: 20. PMID 18373848 DOI: 10.1186/1472-6807-8-20  0.67
2007 Tian Y, Cuneo MJ, Changela A, Höcker B, Beese LS, Hellinga HW. Structure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein. Protein Science : a Publication of the Protein Society. 16: 2240-50. PMID 17766373 DOI: 10.1110/Ps.072969407  0.651
2006 Cuneo MJ, Changela A, Warren JJ, Beese LS, Hellinga HW. The crystal structure of a thermophilic glucose binding protein reveals adaptations that interconvert mono and di-saccharide binding sites. Journal of Molecular Biology. 362: 259-70. PMID 16904687 DOI: 10.1016/J.Jmb.2006.06.084  0.735
2006 Rizk SS, Cuneo MJ, Hellinga HW. Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates. Protein Science : a Publication of the Protein Society. 15: 1745-51. PMID 16751609 DOI: 10.1110/Ps.062135206  0.743
2005 Smith JJ, Conrad DW, Cuneo MJ, Hellinga HW. Orthogonal site-specific protein modification by engineering reversible thiol protection mechanisms. Protein Science : a Publication of the Protein Society. 14: 64-73. PMID 15576565 DOI: 10.1110/Ps.04965405  0.667
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