Yang Shi, Ph.D. - Publications

Affiliations: 
2007 University of California, Riverside, Riverside, CA, United States 
Area:
Neuroscience Biology, Cell Biology

82 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Shen H, Xu W, Guo R, Rong B, Gu L, Wang Z, He C, Zheng L, Hu X, Hu Z, Shao ZM, Yang P, Wu F, Shi YG, Shi Y, et al. Suppression of Enhancer Overactivation by a RACK7-Histone Demethylase Complex. Cell. 165: 331-342. PMID 27058665 DOI: 10.1016/j.cell.2016.02.064  0.96
2016 Iwase S, Brookes E, Agarwal S, Badeaux AI, Ito H, Vallianatos CN, Tomassy GS, Kasza T, Lin G, Thompson A, Gu L, Kwan KY, Chen C, Sartor MA, Egan B, ... ... Shi Y, et al. A Mouse Model of X-linked Intellectual Disability Associated with Impaired Removal of Histone Methylation. Cell Reports. PMID 26804915 DOI: 10.1016/j.celrep.2015.12.091  0.96
2015 Shi Y, Wang Z, Zhang X, Xu T, Ji S, Ding D, Yang Z, Wang L. Multi-responsive supramolecular hydrogels for drug delivery. Chemical Communications (Cambridge, England). PMID 26329300 DOI: 10.1039/c5cc05792b  0.96
2015 Greer EL, Blanco MA, Gu L, Sendinc E, Liu J, Aristizábal-Corrales D, Hsu CH, Aravind L, He C, Shi Y. DNA Methylation on N(6)-Adenine in C. elegans. Cell. 161: 868-78. PMID 25936839 DOI: 10.1016/j.cell.2015.04.005  0.96
2015 Laurent B, Ruitu L, Murn J, Hempel K, Ferrao R, Xiang Y, Liu S, Garcia BA, Wu H, Wu F, Steen H, Shi Y. A specific LSD1/KDM1A isoform regulates neuronal differentiation through H3K9 demethylation. Molecular Cell. 57: 957-70. PMID 25684206 DOI: 10.1016/j.molcel.2015.01.010  0.96
2015 Brookes E, Laurent B, Õunap K, Carroll R, Moeschler JB, Field M, Schwartz CE, Gecz J, Shi Y. Mutations in the intellectual disability gene KDM5C reduce protein stability and demethylase activity. Human Molecular Genetics. 24: 2861-72. PMID 25666439 DOI: 10.1093/hmg/ddv046  0.96
2014 Tsai CL, Shi Y, Tainer JA. How substrate specificity is imposed on a histone demethylase--lessons from KDM2A. Genes & Development. 28: 1735-8. PMID 25128493 DOI: 10.1101/gad.249755.114  0.96
2013 Lim HJ, Dimova NV, Tan MK, Sigoillot FD, King RW, Shi Y. The G2/M regulator histone demethylase PHF8 is targeted for degradation by the anaphase-promoting complex containing CDC20. Molecular and Cellular Biology. 33: 4166-80. PMID 23979597 DOI: 10.1128/MCB.00689-13  0.96
2013 Zhang H, Xu H, Weihrauch D, Jones DW, Jing X, Shi Y, Gourlay D, Oldham KT, Hillery CA, Pritchard KA. Inhibition of myeloperoxidase decreases vascular oxidative stress and increases vasodilatation in sickle cell disease mice. Journal of Lipid Research. 54: 3009-15. PMID 23956444 DOI: 10.1194/jlr.M038281  0.96
2013 Chen H, Ma H, Inuzuka H, Diao J, Lan F, Shi YG, Wei W, Shi Y. DNA damage regulates UHRF1 stability via the SCF(β-TrCP) E3 ligase. Molecular and Cellular Biology. 33: 1139-48. PMID 23297342 DOI: 10.1128/MCB.01191-12  0.96
2012 Yang YJ, Baltus AE, Mathew RS, Murphy EA, Evrony GD, Gonzalez DM, Wang EP, Marshall-Walker CA, Barry BJ, Murn J, Tatarakis A, Mahajan MA, Samuels HH, Shi Y, Golden JA, et al. Microcephaly gene links trithorax and REST/NRSF to control neural stem cell proliferation and differentiation. Cell. 151: 1097-112. PMID 23178126 DOI: 10.1016/j.cell.2012.10.043  0.96
2012 Ballaré C, Lange M, Lapinaite A, Martin GM, Morey L, Pascual G, Liefke R, Simon B, Shi Y, Gozani O, Carlomagno T, Benitah SA, Di Croce L. Phf19 links methylated Lys36 of histone H3 to regulation of Polycomb activity. Nature Structural & Molecular Biology. 19: 1257-65. PMID 23104054 DOI: 10.1038/nsmb.2434  0.96
2012 Kim HG, Kim HT, Leach NT, Lan F, Ullmann R, Silahtaroglu A, Kurth I, Nowka A, Seong IS, Shen Y, Talkowski ME, Ruderfer D, Lee JH, Glotzbach C, Ha K, ... ... Shi Y, et al. Translocations disrupting PHF21A in the Potocki-Shaffer-syndrome region are associated with intellectual disability and craniofacial anomalies. American Journal of Human Genetics. 91: 56-72. PMID 22770980 DOI: 10.1016/j.ajhg.2012.05.005  0.96
2012 Blättler SM, Verdeguer F, Liesa M, Cunningham JT, Vogel RO, Chim H, Liu H, Romanino K, Shirihai OS, Vazquez F, Rüegg MA, Shi Y, Puigserver P. Defective mitochondrial morphology and bioenergetic function in mice lacking the transcription factor Yin Yang 1 in skeletal muscle. Molecular and Cellular Biology. 32: 3333-46. PMID 22711985 DOI: 10.1128/MCB.00337-12  0.96
2012 Blättler SM, Cunningham JT, Verdeguer F, Chim H, Haas W, Liu H, Romanino K, Rüegg MA, Gygi SP, Shi Y, Puigserver P. Yin Yang 1 deficiency in skeletal muscle protects against rapamycin-induced diabetic-like symptoms through activation of insulin/IGF signaling. Cell Metabolism. 15: 505-17. PMID 22482732 DOI: 10.1016/j.cmet.2012.03.008  0.96
2012 Greer EL, Shi Y. Histone methylation: a dynamic mark in health, disease and inheritance. Nature Reviews. Genetics. 13: 343-57. PMID 22473383 DOI: 10.1038/nrg3173  0.96
2012 Teng RJ, Du J, Welak S, Guan T, Eis A, Shi Y, Konduri GG. Cross talk between NADPH oxidase and autophagy in pulmonary artery endothelial cells with intrauterine persistent pulmonary hypertension American Journal of Physiology - Lung Cellular and Molecular Physiology. 302. PMID 22245997 DOI: 10.1152/ajplung.00177.2011  0.96
2012 Wang Y, Kallgren SP, Reddy BD, Kuntz K, López-Maury L, Thompson J, Watt S, Ma C, Hou H, Shi Y, Yates JR, Bähler J, O'Connell MJ, Jia S. Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast. The Journal of Biological Chemistry. 287: 4386-93. PMID 22184112 DOI: 10.1074/jbc.M111.329417  0.96
2011 Dango S, Mosammaparast N, Sowa ME, Xiong LJ, Wu F, Park K, Rubin M, Gygi S, Harper JW, Shi Y. DNA unwinding by ASCC3 helicase is coupled to ALKBH3-dependent DNA alkylation repair and cancer cell proliferation. Molecular Cell. 44: 373-84. PMID 22055184 DOI: 10.1016/j.molcel.2011.08.039  0.96
2011 Greer EL, Maures TJ, Ucar D, Hauswirth AG, Mancini E, Lim JP, Benayoun BA, Shi Y, Brunet A. Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans. Nature. 479: 365-71. PMID 22012258 DOI: 10.1038/nature10572  0.96
2011 Vladic N, Ge ZD, Leucker T, Brzezinska AK, Du JH, Shi Y, Warltier DC, Pratt PF, Kersten JR. Decreased tetrahydrobiopterin and disrupted association of Hsp90 with eNOS by hyperglycemia impair myocardial ischemic preconditioning. American Journal of Physiology. Heart and Circulatory Physiology. 301: H2130-9. PMID 21908789 DOI: 10.1152/ajpheart.01078.2010  0.96
2011 Rajakumara E, Wang Z, Ma H, Hu L, Chen H, Lin Y, Guo R, Wu F, Li H, Lan F, Shi YG, Xu Y, Patel DJ, Shi Y. PHD finger recognition of unmodified histone H3R2 links UHRF1 to regulation of euchromatic gene expression. Molecular Cell. 43: 275-84. PMID 21777816 DOI: 10.1016/j.molcel.2011.07.006  0.96
2011 Iwase S, Xiang B, Ghosh S, Ren T, Lewis PW, Cochrane JC, Allis CD, Picketts DJ, Patel DJ, Li H, Shi Y. ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome. Nature Structural & Molecular Biology. 18: 769-76. PMID 21666679 DOI: 10.1038/nsmb.2062  0.96
2011 Teng RJ, Du J, Xu H, Bakhutashvili I, Eis A, Shi Y, Pritchard KA, Konduri GG. Sepiapterin improves angiogenesis of pulmonary artery endothelial cells with in utero pulmonary hypertension by recoupling endothelial nitric oxide synthase American Journal of Physiology - Lung Cellular and Molecular Physiology. 301. PMID 21622842 DOI: 10.1152/ajplung.00316.2010  0.96
2011 Xu Y, Wu F, Tan L, Kong L, Xiong L, Deng J, Barbera AJ, Zheng L, Zhang H, Huang S, Min J, Nicholson T, Chen T, Xu G, Shi Y, ... ... Shi YG, et al. Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Molecular Cell. 42: 451-64. PMID 21514197 DOI: 10.1016/j.molcel.2011.04.005  0.96
2010 Yu H, Mashtalir N, Daou S, Hammond-Martel I, Ross J, Sui G, Hart GW, Rauscher FJ, Drobetsky E, Milot E, Shi Y, Affar el B. The ubiquitin carboxyl hydrolase BAP1 forms a ternary complex with YY1 and HCF-1 and is a critical regulator of gene expression. Molecular and Cellular Biology. 30: 5071-85. PMID 20805357 DOI: 10.1128/MCB.00396-10  0.96
2010 Fang R, Barbera AJ, Xu Y, Rutenberg M, Leonor T, Bi Q, Lan F, Mei P, Yuan GC, Lian C, Peng J, Cheng D, Sui G, Kaiser UB, Shi Y, ... Shi YG, et al. Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation. Molecular Cell. 39: 222-33. PMID 20670891 DOI: 10.1016/j.molcel.2010.07.008  0.96
2010 Wang W, Xu H, Shi Y, Nandedkar S, Zhang H, Gao H, Feroah T, Weihrauch D, Schulte ML, Jones DW, Jarzembowski J, Sorci-Thomas M, Pritchard KA. Genetic deletion of apolipoprotein A-I increases airway hyperresponsiveness, inflammation, and collagen deposition in the lung. Journal of Lipid Research. 51: 2560-70. PMID 20498409 DOI: 10.1194/jlr.M004549  0.96
2010 Mosammaparast N, Shi Y. Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases. Annual Review of Biochemistry. 79: 155-79. PMID 20373914 DOI: 10.1146/annurev.biochem.78.070907.103946  0.96
2010 Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y, Selker EU. The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa. Genes & Development. 24: 443-54. PMID 20139222 DOI: 10.1101/gad.1893210  0.96
2010 Amour J, Brzezinska AK, Jager Z, Sullivan C, Weihrauch D, Du J, Vladic N, Shi Y, Warltier DC, Pratt PF, Kersten JR. Hyperglycemia adversely modulates endothelial nitric oxide synthase during anesthetic preconditioning through tetrahydrobiopterin- and heat shock protein 90-mediated mechanisms. Anesthesiology. 112: 576-85. PMID 20124983 DOI: 10.1097/ALN.0b013e3181cded1f  0.96
2010 Wang JK, Tsai MC, Poulin G, Adler AS, Chen S, Liu H, Shi Y, Chang HY. The histone demethylase UTX enables RB-dependent cell fate control. Genes & Development. 24: 327-32. PMID 20123895 DOI: 10.1101/gad.1882610  0.96
2010 Horton JR, Upadhyay AK, Qi HH, Zhang X, Shi Y, Cheng X. Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases. Nature Structural & Molecular Biology. 17: 38-43. PMID 20023638 DOI: 10.1038/nsmb.1753  0.96
2010 Whitehouse JS, Xu H, Shi Y, Noll L, Kaul S, Jones DW, Pritchard KA, Oldham KT, Gourlay DM. Mesenteric nitric oxide and superoxide production in experimental necrotizing enterocolitis. The Journal of Surgical Research. 161: 1-8. PMID 19922948 DOI: 10.1016/j.jss.2009.07.028  0.96
2009 Shi Y, Pontrello CG, DeFea KA, Reichardt LF, Ethell IM. Focal adhesion kinase acts downstream of EphB receptors to maintain mature dendritic spines by regulating cofilin activity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 8129-42. PMID 19553453 DOI: 10.1523/JNEUROSCI.4681-08.2009  0.96
2009 Chen S, Whetstine JR, Ghosh S, Hanover JA, Gali RR, Grosu P, Shi Y. The conserved NAD(H)-dependent corepressor CTBP-1 regulates Caenorhabditis elegans life span. Proceedings of the National Academy of Sciences of the United States of America. 106: 1496-501. PMID 19164523 DOI: 10.1073/pnas.0802674106  0.96
2008 Mulligan P, Westbrook TF, Ottinger M, Pavlova N, Chang B, Macia E, Shi YJ, Barretina J, Liu J, Howley PM, Elledge SJ, Shi Y. CDYL Bridges REST and Histone Methyltransferases for Gene Repression and Suppression of Cellular Transformation Molecular Cell. 32: 718-726. PMID 19061646 DOI: 10.1016/j.molcel.2008.10.025  0.96
2008 Kim HG, Kurth I, Lan F, Meliciani I, Wenzel W, Eom SH, Kang GB, Rosenberger G, Tekin M, Ozata M, Bick DP, Sherins RJ, Walker SL, Shi Y, Gusella JF, et al. Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. American Journal of Human Genetics. 83: 511-9. PMID 18834967 DOI: 10.1016/j.ajhg.2008.09.005  0.96
2008 Vásquez-Vivar J, Whitsett J, Ionova I, Konorev E, Zielonka J, Kalyanaraman B, Shi Y, Pieper GM. Cytokines and lipopolysaccharides induce inducible nitric oxide synthase but not enzyme activity in adult rat cardiomyocytes Free Radical Biology and Medicine. 45: 994-1001. PMID 18634867 DOI: 10.1016/j.freeradbiomed.2008.06.017  0.96
2008 Westbrook TF, Hu G, Ang XL, Mulligan P, Pavlova NN, Liang A, Leng Y, Maehr R, Shi Y, Harper JW, Elledge SJ. SCFβ-TRCP controls oncogenic transformation and neural differentiation through REST degradation Nature. 452: 370-374. PMID 18354483 DOI: 10.1038/nature06780  0.96
2008 Shim SY, Samuels BA, Wang J, Neumayer G, Belzil C, Ayala R, Shi Y, Shi Y, Tsai LH, Nguyen MD. Ndel1 controls the dynein-mediated transport of vimentin during neurite outgrowth. The Journal of Biological Chemistry. 283: 12232-40. PMID 18303022 DOI: 10.1074/jbc.M710200200  0.96
2008 Baker JE, Su J, Hsu A, Shi Y, Zhao M, Strande JL, Fu X, Xu H, Eis A, Komorowski R, Jensen ES, Tweddell JS, Rafiee P, Gross GJ. Human thrombopoietin reduces myocardial infarct size, apoptosis, and stunning following ischaemia/reperfusion in rats Cardiovascular Research. 77: 44-53. PMID 18006466 DOI: 10.1093/cvr/cvm026  0.96
2007 Shi Y, Jiang MT, Su J, Hutchins W, Konorev E, Baker JE. Mitochondrial big conductance KCa channel and cardioprotection in infant rabbit heart Journal of Cardiovascular Pharmacology. 50: 497-502. PMID 18030058 DOI: 10.1097/FJC.0b013e318137991d  0.96
2007 Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, Pillus L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y. New nomenclature for chromatin-modifying enzymes. Cell. 131: 633-6. PMID 18022353 DOI: 10.1016/j.cell.2007.10.039  0.96
2007 Shi Y. Histone lysine demethylases: Emerging roles in development, physiology and disease Nature Reviews Genetics. 8: 829-833. PMID 17909537 DOI: 10.1038/nrg2218  0.96
2007 Lan F, Bayliss PE, Rinn JL, Whetstine JR, Wang JK, Chen S, Iwase S, Alpatov R, Issaeva I, Canaani E, Roberts TM, Chang HY, Shi Y. A histone H3 lysine 27 demethylase regulates animal posterior development. Nature. 449: 689-94. PMID 17851529 DOI: 10.1038/nature06192  0.96
2007 Cai Y, Jin J, Yao T, Gottschalk AJ, Swanson SK, Wu S, Shi Y, Washburn MP, Florens L, Conaway RC, Conaway JW. YY1 functions with INO80 to activate transcription. Nature Structural & Molecular Biology. 14: 872-4. PMID 17721549 DOI: 10.1038/nsmb1276  0.96
2007 Lan F, Collins RE, De Cegli R, Alpatov R, Horton JR, Shi X, Gozani O, Cheng X, Shi Y. Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression. Nature. 448: 718-22. PMID 17687328 DOI: 10.1038/nature06034  0.96
2007 Huarte M, Lan F, Kim T, Vaughn MW, Zaratiegui M, Martienssen RA, Buratowski S, Shi Y. The fission yeast Jmj2 reverses histone H3 Lysine 4 trimethylation. The Journal of Biological Chemistry. 282: 21662-70. PMID 17550896 DOI: 10.1074/jbc.M703897200  0.96
2007 Weihrauch D, Xu H, Shi Y, Wang J, Brien J, Jones DW, Kaul S, Komorowski RA, Csuka ME, Oldham KT, Pritchard KA. Effects of D-4F on vasodilation, oxidative stress, angiostatin, myocardial inflammation, and angiogenic potential in tight-skin mice. American Journal of Physiology. Heart and Circulatory Physiology. 293: H1432-41. PMID 17496220 DOI: 10.1152/ajpheart.00038.2007  0.96
2007 Horwitz AA, Affar el B, Heine GF, Shi Y, Parvin JD. A mechanism for transcriptional repression dependent on the BRCA1 E3 ubiquitin ligase. Proceedings of the National Academy of Sciences of the United States of America. 104: 6614-9. PMID 17420471 DOI: 10.1073/pnas.0610481104  0.96
2007 Donohoe ME, Zhang LF, Xu N, Shi Y, Lee JT. Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch. Molecular Cell. 25: 43-56. PMID 17218270 DOI: 10.1016/j.molcel.2006.11.017  0.96
2007 Shi Y, Whetstine JR. Dynamic regulation of histone lysine methylation by demethylases. Molecular Cell. 25: 1-14. PMID 17218267 DOI: 10.1016/j.molcel.2006.12.010  0.96
2006 Densmore JC, Signorino PR, Ou J, Hatoum OA, Rowe JJ, Shi Y, Kaul S, Jones DW, Sabina RE, Pritchard KA, Guice KS, Oldham KT. Endothelium-derived microparticles induce endothelial dysfunction and acute lung injury. Shock (Augusta, Ga.). 26: 464-71. PMID 17047516 DOI: 10.1097/01.shk.0000228791.10550.36  0.96
2006 Luke MP, Sui G, Liu H, Shi Y. Yin Yang 1 physically interacts with Hoxa11 and represses Hoxa11-dependent transcription. The Journal of Biological Chemistry. 281: 33226-32. PMID 16963455 DOI: 10.1074/jbc.M606584200  0.96
2006 Cabigas BP, Su J, Hutchins W, Shi Y, Schaefer RB, Recinos RF, Nilakantan V, Kindwall E, Niezgoda JA, Baker JE. Hyperoxic and hyperbaric-induced cardioprotection: role of nitric oxide synthase 3. Cardiovascular Research. 72: 143-51. PMID 16930572 DOI: 10.1016/j.cardiores.2006.06.031  0.96
2006 Chen Z, Zang J, Whetstine J, Hong X, Davrazou F, Kutateladze TG, Simpson M, Mao Q, Pan CH, Dai S, Hagman J, Hansen K, Shi Y, Zhang G. Structural insights into histone demethylation by JMJD2 family members. Cell. 125: 691-702. PMID 16677698 DOI: 10.1016/j.cell.2006.04.024  0.96
2006 Whetstine JR, Nottke A, Lan F, Huarte M, Smolikov S, Chen Z, Spooner E, Li E, Zhang G, Colaiacovo M, Shi Y. Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell. 125: 467-81. PMID 16603238 DOI: 10.1016/j.cell.2006.03.028  0.96
2006 Nilakantan V, Zhou X, Hilton G, Shi Y, Baker JE, Khanna AK, Pieper GM. Antagonizing reactive oxygen by treatment with a manganese (III) metalloporphyrin-based superoxide dismutase mimetic in cardiac transplants Journal of Thoracic and Cardiovascular Surgery. 131: 898-906. PMID 16580450 DOI: 10.1016/j.jtcvs.2005.11.015  0.96
2006 Bates EA, Victor M, Jones AK, Shi Y, Hart AC. Differential contributions of Caenorhabditis elegans histone deacetylases to huntingtin polyglutamine toxicity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 2830-8. PMID 16525063 DOI: 10.1523/JNEUROSCI.3344-05.2006  0.96
2006 Shi Y, Ethell IM. Integrins control dendritic spine plasticity in hippocampal neurons through NMDA receptor and Ca2+/calmodulin-dependent protein kinase II-mediated actin reorganization. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 1813-22. PMID 16467530 DOI: 10.1523/JNEUROSCI.4091-05.2006  0.96
2006 Jiang MT, Ljubkovic M, Nakae Y, Shi Y, Kwok WM, Stowe DF, Bosnjak ZJ. Characterization of human cardiac mitochondrial ATP-sensitive potassium channel and its regulation by phorbol ester in vitro. American Journal of Physiology. Heart and Circulatory Physiology. 290: H1770-6. PMID 16361367 DOI: 10.1152/ajpheart.01084.2005  0.96
2006 Moeller ML, Shi Y, Reichardt LF, Ethell IM. EphB receptors regulate dendritic spine morphogenesis through the recruitment/phosphorylation of focal adhesion kinase and RhoA activation. The Journal of Biological Chemistry. 281: 1587-98. PMID 16298995 DOI: 10.1074/jbc.M511756200  0.96
2005 Park SK, Nguyen MD, Fischer A, Luke MP, Affar el B, Dieffenbach PB, Tseng HC, Shi Y, Tsai LH. Par-4 links dopamine signaling and depression. Cell. 122: 275-87. PMID 16051151 DOI: 10.1016/j.cell.2005.05.031  0.96
2005 Sui G, Shi Y. Gene silencing by a DNA vector-based RNAi technology. Methods in Molecular Biology (Clifton, N.J.). 309: 205-18. PMID 15990402 DOI: 10.1385/1-59259-935-4:205  0.96
2005 Baumeister P, Luo S, Skarnes WC, Sui G, Seto E, Shi Y, Lee AS. Endoplasmic reticulum stress induction of the Grp78/BiP promoter: activating mechanisms mediated by YY1 and its interactive chromatin modifiers. Molecular and Cellular Biology. 25: 4529-40. PMID 15899857 DOI: 10.1128/MCB.25.11.4529-4540.2005  0.96
2005 Whetstine JR, Ceron J, Ladd B, Dufourcq P, Reinke V, Shi Y. Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase. Molecular Cell. 18: 483-90. PMID 15893731 DOI: 10.1016/j.molcel.2005.04.006  0.96
2005 Shi Y, Hutchins W, Ogawa H, Chang CC, Pritchard KA, Zhang C, Khampang P, Lazar J, Jacob HJ, Rafiee P, Baker JE. Increased resistance to myocardial ischemia in the Brown Norway vs. Dahl S rat: Role of nitric oxide synthase and Hsp90 Journal of Molecular and Cellular Cardiology. 38: 625-635. PMID 15808839 DOI: 10.1016/j.yjmcc.2005.02.005  0.96
2005 Shi Y, Hutchins WC, Su J, Siker D, Hogg N, Pritchard KA, Keszler A, Tweddell JS, Baker JE. Delayed cardioprotection with isoflurane: role of reactive oxygen and nitrogen. American Journal of Physiology. Heart and Circulatory Physiology. 288: H175-84. PMID 15388508 DOI: 10.1152/ajpheart.00494.2004  0.96
2005 Fitzpatrick CM, Shi Y, Hutchins WC, Su J, Gross GJ, Ostadal B, Tweddell JS, Baker JE. Cardioprotection in chronically hypoxic rabbits persists on exposure to normoxia: role of NOS and KATP channels. American Journal of Physiology. Heart and Circulatory Physiology. 288: H62-8. PMID 15319200 DOI: 10.1152/ajpheart.00701.2004  0.96
2004 Alpatov R, Munguba GC, Caton P, Joo JH, Shi Y, Shi Y, Hunt ME, Sugrue SP. Nuclear speckle-associated protein Pnn/DRS binds to the transcriptional corepressor CtBP and relieves CtBP-mediated repression of the E-cadherin gene. Molecular and Cellular Biology. 24: 10223-35. PMID 15542832 DOI: 10.1128/MCB.24.23.10223-10235.2004  0.96
2004 Chen J, Wall NR, Kocher K, Duclos N, Fabbro D, Neuberg D, Griffin JD, Shi Y, Gilliland DG. Stable expression of small interfering RNA sensitizes TEL-PDGFβR to inhibition with imatinib or rapamycin Journal of Clinical Investigation. 113: 1784-1791. PMID 15199413 DOI: 10.1172/JCI20673  0.96
2004 Lo MC, Gay F, Odom R, Shi Y, Lin R. Phosphorylation by the beta-catenin/MAPK complex promotes 14-3-3-mediated nuclear export of TCF/POP-1 in signal-responsive cells in C. elegans. Cell. 117: 95-106. PMID 15066285 DOI: 10.1016/S0092-8674(04)00203-X  0.96
2004 Walker AK, Shi Y, Blackwell TK. An extensive requirement for transcription factor IID-specific TAF-1 in Caenorhabditis elegans embryonic transcription. The Journal of Biological Chemistry. 279: 15339-47. PMID 14726532 DOI: 10.1074/jbc.M310731200  0.96
2003 Wall NR, Shi Y. Small RNA: Can RNA interference be exploited for therapy? Lancet. 362: 1401-1403. PMID 14585643 DOI: 10.1016/S0140-6736(03)14637-5  0.96
2003 Rafiee P, Shi Y, Pritchard KA, Ogawa H, Eis AL, Komorowski RA, Fitzpatrick CM, Tweddell JS, Litwin SB, Mussatto K, Jaquiss RD, Baker JE. Cellular redistribution of inducible Hsp70 protein in the human and rabbit heart in response to the stress of chronic hypoxia: role of protein kinases,. The Journal of Biological Chemistry. 278: 43636-44. PMID 12937165 DOI: 10.1074/jbc.M212993200  0.96
2003 Shi Y. Mammalian RNAi for the masses Trends in Genetics. 19: 9-12. PMID 12493242 DOI: 10.1016/S0168-9525(02)00005-7  0.96
2002 Gaudilliere B, Shi Y, Bonni A. RNA interference reveals a requirement for myocyte enhancer factor 2A in activity-dependent neuronal survival. The Journal of Biological Chemistry. 277: 46442-6. PMID 12235147 DOI: 10.1074/jbc.M206653200  0.96
2002 Shim EY, Walker AK, Shi Y, Blackwell TK. CDK-9/cyclin T (P-TEFb) is required in two postinitiation pathways for transcription in the C. elegans embryo. Genes & Development. 16: 2135-46. PMID 12183367 DOI: 10.1101/gad.999002  0.96
2002 Victor M, Bei Y, Gay F, Calvo D, Mello C, Shi Y. HAT activity is essential for CBP-1-dependent transcription and differentiation in Caenorhabditis elegans. Embo Reports. 3: 50-5. PMID 11751575 DOI: 10.1093/embo-reports/kvf006  0.96
2000 Sze JY, Victor M, Loer C, Shi Y, Ruvkun G. Food and metabolic signalling defects in a Caenorhabditis elegans serotonin-synthesis mutant. Nature. 403: 560-4. PMID 10676966 DOI: 10.1038/35000609  0.96
1999 Cook J, Krishnan S, Ananth S, Sells SF, Shi Y, Walther MM, Linehan WM, Sukhatme VP, Weinstein MH, Rangnekar VM. Decreased expression of the pro-apoptotic protein Par-4 in renal cell carcinoma. Oncogene. 18: 1205-8. PMID 10022126 DOI: 10.1038/sj.onc.1202416  0.96
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