Peer Bork - Related publications

Affiliations: 
Structural and Computational Biology European Molecular Biology Laboratory (EMBL) + Max Delbrück Center for Molecular Medicine 
Website:
http://www.bork.embl.de/j/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Safder I, Shao G, Sheng Z, Hu P, Tang S. Genome-wide identification studies - A primer to explore new genes in plant species. Plant Biology (Stuttgart, Germany). PMID 34558163 DOI: 10.1111/plb.13340   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Anene-Nzelu CG, Lee MCJ, Tan WLW, Dashi A, Foo RSY. Genomic enhancers in cardiac development and disease. Nature Reviews. Cardiology. PMID 34381190 DOI: 10.1038/s41569-021-00597-2   
2021 Cooley NP, Wright ES. Accurate annotation of protein coding sequences with IDTAXA. Nar Genomics and Bioinformatics. 3: lqab080. PMID 34541527 DOI: 10.1093/nargab/lqab080   
2021 Hassan KA, Maher C, Elbourne LD, Henderson PJ, Paulsen IT. Increasing the PACE of characterising novel transporters by functional genomics. Current Opinion in Microbiology. 64: 1-8. PMID 34492595 DOI: 10.1016/j.mib.2021.08.005   
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C. Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen . Microorganisms. 9. PMID 34361922 DOI: 10.3390/microorganisms9071488   
2021 Oliveira J, Antunes M, Godinho CP, Teixeira MC, Sá-Correia I, Monteiro PT. From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon. Bmc Bioinformatics. 22: 399. PMID 34376148 DOI: 10.1186/s12859-021-04312-3   
2021 Conde C, Price-Carter M, Cochard T, Branger M, Stevenson K, Whittington R, Bannantine JP, Biet F. Whole-Genome Analysis of subsp. IS -. Frontiers in Microbiology. 12: 660002. PMID 34040595 DOI: 10.3389/fmicb.2021.660002   
2021 Park J, Wang HH. Systematic dissection of σ sequence diversity and function in bacteria. Cell Reports. 36: 109590. PMID 34433066 DOI: 10.1016/j.celrep.2021.109590   
2021 Kang L, Michalak P, Hallerman E, Moncrief ND. A Draft Genome Assembly for the Eastern Fox Squirrel, Sciurus niger. G3 (Bethesda, Md.). PMID 34550334 DOI: 10.1093/g3journal/jkab315   
2021 Wakao S, Shih PM, Guan K, Schackwitz W, Ye J, Patel D, Shih RM, Dent RM, Chovatia M, Sharma A, Martin J, Wei CL, Niyogi KK. Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. Plos Genetics. 17: e1009725. PMID 34492001 DOI: 10.1371/journal.pgen.1009725   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Umarov R, Li Y, Arakawa T, Takizawa S, Gao X, Arner E. ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation. Plos Computational Biology. 17: e1009376. PMID 34491989 DOI: 10.1371/journal.pcbi.1009376   
2021 Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome Biology. 22: 245. PMID 34433494 DOI: 10.1186/s13059-021-02459-z   
2021 Saha S, Cooksey AM, Childers AK, Poelchau MF, McCarthy FM. Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes. Insects. 12. PMID 34442314 DOI: 10.3390/insects12080748   
2021 Gan J, Li Y, Wan Y, Li J, Zhang B. The complete mitochondrial genome sequence of (Anura: Ranidae). Mitochondrial Dna. Part B, Resources. 6: 2418-2419. PMID 34350353 DOI: 10.1080/23802359.2021.1920502   
2021 Andronis CE, Hane JK, Bringans S, Hardy GESJ, Jacques S, Lipscombe R, Tan KC. Gene Validation and Remodelling Using Proteogenomics of , the Causal Agent of Dieback. Frontiers in Microbiology. 12: 665396. PMID 34394023 DOI: 10.3389/fmicb.2021.665396   
2021 Willemin A, Lopez-Delisle L, Bolt CC, Gadolini ML, Duboule D, Rodriguez-Carballo E. Induction of a chromatin boundary in vivo upon insertion of a TAD border. Plos Genetics. 17: e1009691. PMID 34292939 DOI: 10.1371/journal.pgen.1009691   
2021 Liu N, Low WY, Alinejad-Rokny H, Pederson S, Sadlon T, Barry S, Breen J. Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C. Epigenetics & Chromatin. 14: 41. PMID 34454581 DOI: 10.1186/s13072-021-00417-4   
2021 Yuan XL, Zha DX, Xue L, Wang XY, Xu G, Li WB, Xu HQ. Complete chloroplast genome sequence of and its phylogenetic position. Mitochondrial Dna. Part B, Resources. 6: 2480-2481. PMID 34377800 DOI: 10.1080/23802359.2021.1915199   
2021 Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England). PMID 34406385 DOI: 10.1093/bioinformatics/btab604   
2021 Qin X, Wang H, Miao C, Yang X, Zhang Y, Feng J, Forsythe SJ, Man C, Jiang Y. Comparative genomics reveals environmental adaptation differences between Cronobacter species. Food Research International (Ottawa, Ont.). 147: 110541. PMID 34399518 DOI: 10.1016/j.foodres.2021.110541   
2021 He J, Zhao C, Guo Y, Zhang H, Zhao B, Chu Z. Completely mitochondrial genome of . Mitochondrial Dna. Part B, Resources. 6: 2708-2709. PMID 34435128 DOI: 10.1080/23802359.2021.1945966   
2021 Li S, Shen F, Zhang S, Niu J, Niu Y, Li L, Zhao J. The complete chloroplast genome of (Hampe ex Ochi) Z. Iwatsuki and T. J. Koponen. Mitochondrial Dna. Part B, Resources. 6: 2632-2634. PMID 34409162 DOI: 10.1080/23802359.2021.1962759   
2021 Ren F, Wang L, Zhuo W, Lu S, Zhu X, Liu C, Yang M. First complete chloroplast genome of the rare medicinal plant . Mitochondrial Dna. Part B, Resources. 6: 2993-2994. PMID 34568558 DOI: 10.1080/23802359.2021.1975507   
2021 Pang J, Hu W, Wang W, Li J, Mao K. The complete chloroplast genome of , a Critically Endangered species in New Caledonia. Mitochondrial Dna. Part B, Resources. 6: 2648-2649. PMID 34409167 DOI: 10.1080/23802359.2021.1964399   
2021 Zhang F, Wang N, Cheng G, Shu X, Wang T, Zhuang W, Lu R, Wang Z. Comparative Chloroplast Genomes of Four Species (Amaryllidaceae) Provides New Insight into Interspecific Relationship and Phylogeny. Biology. 10. PMID 34439948 DOI: 10.3390/biology10080715   
2021 Terzian P, Olo Ndela E, Galiez C, Lossouarn J, Pérez Bucio RE, Mom R, Toussaint A, Petit MA, Enault F. PHROG: families of prokaryotic virus proteins clustered using remote homology. Nar Genomics and Bioinformatics. 3: lqab067. PMID 34377978 DOI: 10.1093/nargab/lqab067   
2021 Ju X, Shi G, Chen S, Dai W, He T. Characterization and phylogenetic analysis of the complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 2750-2751. PMID 34471694 DOI: 10.1080/23802359.2021.1967799   
2021 Chong X, Chen H, Wang C, Zhou T, Li Y, Zhou Y, Zhang T, Lu X, Zhang F. Characterization of the complete chloroplast genome of Thunb. (Aquifoliaceae). Mitochondrial Dna. Part B, Resources. 6: 2599-2600. PMID 34395890 DOI: 10.1080/23802359.2021.1961626   
2021 Nitnaware KM, Raskar KB, Agarwal G, Chávez Montes RA, Chopra R, López-Arredondo DL, Nikam TD, Patil GB. Whole-genome characterization and comparative genomics of a novel freshwater cyanobacteria species: Pseudanabaena punensis. Molecular Phylogenetics and Evolution. 164: 107272. PMID 34332035 DOI: 10.1016/j.ympev.2021.107272   
2021 Jiang M, Zhu Y, Wu Q, Zhang H. Complete chloroplast genome of a rare and endangered plant species : genomic features and phylogenetic relationship within Orchidaceae. Mitochondrial Dna. Part B, Resources. 6: 2872-2879. PMID 34532575 DOI: 10.1080/23802359.2021.1972049   
2021 Sharon BM, Hulyalkar NV, Nguyen VH, Zimmern PE, Palmer KL, De Nisco NJ. Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies. Journal of Visualized Experiments : Jove. PMID 34487123 DOI: 10.3791/62872   
2021 Shi M, Xie H, Zhao C, Shi L, Liu J, Li Z. The complete chloroplast genome of Koidz. ex Kitam. and its phylogenetic inference. Mitochondrial Dna. Part B, Resources. 6: 2038-2040. PMID 34377788 DOI: 10.1080/23802359.2021.1927217   
2021 Heckel DG. Perspectives on gene copy number variation and pesticide resistance. Pest Management Science. PMID 34480789 DOI: 10.1002/ps.6631   
2021 Jobanputra V, Wrzeszczynski KO, Buttner R, Caldas C, Cuppen E, Grimmond S, Haferlach T, Mullighan C, Schuh A, Elemento O. Clinical interpretation of whole-genome and whole-transcriptome sequencing for precision oncology. Seminars in Cancer Biology. PMID 34256129 DOI: 10.1016/j.semcancer.2021.07.003   
2021 Li Y, Liu H, Zou J. Complete chloroplast genome of : a species endemic to Guizhou, China. Mitochondrial Dna. Part B, Resources. 6: 2596-2598. PMID 34395889 DOI: 10.1080/23802359.2021.1961625   
2021 Gao Y, Yin S, Zhu L. The mitochondrial genome of the yellow-vented flowerpecker, (Dicaeidae) from southwestern China. Mitochondrial Dna. Part B, Resources. 6: 2860-2862. PMID 34514155 DOI: 10.1080/23802359.2021.1972483   
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Fan ZF, Yu DY, Ma CL. The complete chloroplast genome sequence of Rolfe, a vulnerable wild moth orchid species (Orchidaceae). Mitochondrial Dna. Part B, Resources. 6: 2903-2905. PMID 34532582 DOI: 10.1080/23802359.2021.1923420   
2021 Rangel LT, Soucy SM, Setubal JC, Gogarten JP, Fournier GP. An efficient, non-phylogenetic method for detecting genes sharing evolutionary signals in phylogenomic datasets. Genome Biology and Evolution. PMID 34390574 DOI: 10.1093/gbe/evab187   
2021 Martínez-Cárdenas A, Cruz-Zamora Y, Fajardo-Hernández CA, Villanueva-Silva R, Cruz-García F, Raja HA, Figueroa M. Genome Mining and Molecular Networking-Based Metabolomics of the Marine Facultative sp. MEXU 27854. Molecules (Basel, Switzerland). 26. PMID 34500798 DOI: 10.3390/molecules26175362   
2021 Wang L, Liao B, Gong L, Xiao S, Huang Z. Haploid Genome Analysis Reveals a Tandem Cluster of Four Genes Involved in the High-Temperature Adaptation of . Microbiology Spectrum. e0028721. PMID 34406871 DOI: 10.1128/Spectrum.00287-21   
2021 Qiu Z, Zhu Y, Du Z, Bao P. The complete chloroplast genome sequence of the mangrove associate species . Mitochondrial Dna. Part B, Resources. 6: 2376-2378. PMID 34345700 DOI: 10.1080/23802359.2021.1925171   
2021 Lee JH, Siddique MI, Kwon JK, Kang BC. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of . Frontiers in Microbiology. 12: 694136. PMID 34484141 DOI: 10.3389/fmicb.2021.694136   
2021 Kesawat MS, Kherawat BS, Singh A, Dey P, Kabi M, Debnath D, Saha D, Khandual A, Rout S, Manorama, Ali A, Palem RR, Gupta R, Kadam AA, Kim HU, et al. Genome-Wide Identification and Characterization of the Brassinazole-resistant () Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat ( L.). International Journal of Molecular Sciences. 22. PMID 34445448 DOI: 10.3390/ijms22168743   
2021 Wijayasekara D, Ali A. Evolutionary study of maize dwarf mosaic virus using nearly complete genome sequences acquired by next-generation sequencing. Scientific Reports. 11: 18786. PMID 34552152 DOI: 10.1038/s41598-021-98299-9   
2021 Li HL, Yang M, Zhou N. The complete chloroplast genome and phylogenetic analysis of Craib (Leguminosae). Mitochondrial Dna. Part B, Resources. 6: 2182-2183. PMID 34345677 DOI: 10.1080/23802359.2021.1923410   
2021 Guerrini MM, Oguchi A, Suzuki A, Murakawa Y. Cap analysis of gene expression (CAGE) and noncoding regulatory elements. Seminars in Immunopathology. PMID 34468849 DOI: 10.1007/s00281-021-00886-5