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Sharif S. Aly, Ph.D. - Publications

Affiliations: 
2009 Epidemiology University of California, Davis, Davis, CA 
Area:
Epidemiology, Veterinary Science Biology, Statistics
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Chamchoy T, Okello E, Williams DR, Tonooka K, Glenn K, Maehana K, Gardner IA, Aly SS. Bayesian estimation of sensitivity and specificity of a rapid mastitis test kit, bacterial culture, and PCR for detection of Staphylococcus aureus, Streptococcus species, and coliforms in bovine milk samples. Journal of Dairy Science. PMID 35525615 DOI: 10.3168/jds.2021-20940  0.525
2020 Maier GU, Love WJ, Karle BM, Dubrovsky SA, Williams DR, Champagne JD, Anderson RJ, Rowe JD, Lehenbauer TW, Van Eenennaam AL, Aly SS. A novel risk assessment tool for bovine respiratory disease in preweaned dairy calves. Journal of Dairy Science. 103: 9301-9317. PMID 32921376 DOI: 10.3168/Jds.2019-17650  0.318
2020 Adaska JM, Ekong PS, Clothier KA, Williams DR, Rossitto PV, Lehenbauer TW, Atwill ER, Li X, Aly SS. Bayesian estimation of diagnostic accuracy of fecal culture and PCR-based tests for the detection of in California cull dairy cattle. Peerj. 8: e8310. PMID 31988800 DOI: 10.7717/Peerj.8310  0.403
2020 Dubrovsky SA, Eenennaam ALV, Aly SS, Karle BM, Rossitto PV, Overton MW, Lehenbauer TW, Fadel JG. Preweaning cost of bovine respiratory disease (BRD) and cost-benefit of implementation of preventative measures in calves on California dairies: The BRD 10K study. Journal of Dairy Science. 103: 1583-1597. PMID 31759608 DOI: 10.3168/Jds.2018-15501  0.308
2019 Chamchoy T, Williams DR, Adaska JM, Anderson RJ, Aly SS. Environmental sampling to assess the bioburden of subspecies in drylot pens on California dairies. Peerj. 7: e8081. PMID 31763073 DOI: 10.7717/Peerj.8081  0.419
2019 Belmar M, Aly S, Karle BM, Pereira RV. Evaluation of four commercial tests for detecting ceftiofur in waste milk bulk tank samples. Plos One. 14: e0224884. PMID 31714908 DOI: 10.1371/Journal.Pone.0224884  0.382
2019 El Ashmawy WR, Williams DR, Gerry AC, Champagne JD, Lehenbauer TW, Aly SS. Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies. Plos One. 14: e0224987. PMID 31697765 DOI: 10.1371/Journal.Pone.0224987  0.328
2019 Feldmann HR, Williams DR, Champagne JD, Lehenbauer TW, Aly SS. Effectiveness of zinc supplementation on diarrhea and average daily gain in pre-weaned dairy calves: A double-blind, block-randomized, placebo-controlled clinical trial. Plos One. 14: e0219321. PMID 31291305 DOI: 10.1371/Journal.Pone.0219321  0.333
2019 Maier GU, Love WJ, Karle BM, Dubrovsky SA, Williams DR, Champagne JD, Anderson RJ, Rowe JD, Lehenbauer TW, Van Eenennaam AL, Aly SS. Management factors associated with bovine respiratory disease in preweaned calves on California dairies: The BRD 100 study. Journal of Dairy Science. PMID 31202656 DOI: 10.3168/Jds.2018-14773  0.351
2019 Dubrovsky SA, Eenennaam ALV, Karle BM, Rossitto PV, Lehenbauer TW, Aly SS. Epidemiology of bovine respiratory disease (BRD) in preweaned calves on California dairies: The BRD 10K study. Journal of Dairy Science. 102: 7306-7319. PMID 31202655 DOI: 10.3168/Jds.2018-14774  0.372
2019 Maier GU, Rowe JD, Lehenbauer TW, Karle BM, Williams DR, Champagne JD, Aly SS. Development of a clinical scoring system for bovine respiratory disease in weaned dairy calves. Journal of Dairy Science. PMID 31202651 DOI: 10.3168/Jds.2018-15474  0.338
2019 Dubrovsky SA, Eenennaam ALV, Karle BM, Rossitto PV, Lehenbauer TW, Aly SS. Bovine respiratory disease (BRD) cause-specific and overall mortality in preweaned calves on California dairies: The BRD 10K study. Journal of Dairy Science. 102: 7320-7328. PMID 31202642 DOI: 10.3168/Jds.2018-15463  0.311
2019 Pereira R, Williams DR, Rossitto P, Adaska J, Okello E, Champagne J, Lehenbauer TW, Li X, Chase J, Nguyen T, Pires AFA, Atwill ER, Aly SS. Association between herd management practices and antimicrobial resistance in spp. from cull dairy cattle in Central California. Peerj. 7: e6546. PMID 30923650 DOI: 10.7717/Peerj.6546  0.305
2019 Appelt S, Aly SS, Tonooka K, Glenn K, Xue Z, Lehenbauer TW, Marco ML. Development and comparison of loop-mediated isothermal amplification and quantitative polymerase chain reaction assays for the detection of Mycoplasma bovis in milk. Journal of Dairy Science. PMID 30612794 DOI: 10.3168/Jds.2018-15306  0.31
2018 Karle BM, Maier GU, Love WJ, Dubrovsky SA, Williams DR, Anderson RJ, Van Eenennaam AL, Lehenbauer TW, Aly SS. Regional management practices and prevalence of bovine respiratory disease in California's preweaned dairy calves. Journal of Dairy Science. PMID 30527977 DOI: 10.3168/Jds.2018-14775  0.337
2018 Moisá SJ, Aly SS, Lehenbauer TW, Love WJ, Rossitto PV, Van Eenennaam AL, Trombetta SC, Bortoluzzi EM, Hulbert LE. Association of plasma haptoglobin concentration and other biomarkers with bovine respiratory disease status in pre-weaned dairy calves. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 1040638718807242. PMID 30328386 DOI: 10.1177/1040638718807242  0.325
2018 Konboon M, Bani-Yaghoub M, Pithua PO, Rhee N, Aly SS. A nested compartmental model to assess the efficacy of paratuberculosis control measures on U.S. dairy farms. Plos One. 13: e0203190. PMID 30278041 DOI: 10.1371/Journal.Pone.0203190  0.349
2018 Louie AP, Rowe JD, Love WJ, Lehenbauer TW, Aly SS. Effect of the environment on the risk of respiratory disease in preweaning dairy calves during summer months. Journal of Dairy Science. PMID 30197140 DOI: 10.3168/Jds.2017-13716  0.317
2018 Tempini PN, Aly SS, Karle BM, Pereira RV. Multidrug residues and antimicrobial resistance patterns in waste milk from dairy farms in Central California. Journal of Dairy Science. 101: 8110-8122. PMID 30126599 DOI: 10.3168/Jds.2018-14398  0.368
2017 Doyle D, Credille B, Lehenbauer TW, Berghaus R, Aly SS, Champagne J, Blanchard P, Crossley B, Berghaus L, Cochran S, Woolums A. Agreement Among 4 Sampling Methods to Identify Respiratory Pathogens in Dairy Calves with Acute Bovine Respiratory Disease. Journal of Veterinary Internal Medicine. PMID 28295570 DOI: 10.1111/Jvim.14683  0.314
2016 Tucker TR, Aly SS, Maas J, Davy JS, Foley JE. Investigation of Anaplasma marginale Seroprevalence in a Traditionally Managed Large California Beef Herd. Veterinary Medicine International. 2016: 6186078. PMID 27656312 DOI: 10.1155/2016/6186078  0.398
2016 Abu Aboud OA, Adaska JM, Williams DR, Rossitto PV, Champagne JD, Lehenbauer TW, Atwill R, Li X, Aly SS. Epidemiology of Salmonella sp. in California cull dairy cattle: prevalence of fecal shedding and diagnostic accuracy of pooled enriched broth culture of fecal samples. Peerj. 4: e2386. PMID 27635350 DOI: 10.7717/Peerj.2386  0.368
2016 Love WJ, Lehenbauer TW, Van Eenennaam AL, Drake CM, Kass PH, Farver TB, Aly SS. Sensitivity and specificity of on-farm scoring systems and nasal culture to detect bovine respiratory disease complex in preweaned dairy calves. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. PMID 26796957 DOI: 10.1177/1040638715626204  0.349
2016 Love WJ, Lehenbauer TW, Karle BM, Hulbert LE, Anderson RJ, Van Eenennaam AL, Farver TB, Aly SS. Survey of management practices related to bovine respiratory disease in preweaned calves on California dairies. Journal of Dairy Science. 99: 1483-94. PMID 26709177 DOI: 10.3168/Jds.2015-9394  0.308
2015 Aly SS, Gardner IA, Adaska JM, Anderson RJ. Off-site rearing of heifers reduces the risk of Mycobacterium avium ssp. paratuberculosis ELISA seroconversion and fecal shedding in a California dairy herd. Journal of Dairy Science. 98: 1805-14. PMID 25597977 DOI: 10.3168/Jds.2014-8759  0.521
2014 Neibergs HL, Seabury CM, Wojtowicz AJ, Wang Z, Scraggs E, Kiser JN, Neupane M, Womack JE, Eenennaam AV, Hagevoort GR, Lehenbauer TW, Aly S, Davis J, Taylor JF. Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves. Bmc Genomics. 15: 1164. PMID 25534905 DOI: 10.1186/1471-2164-15-1164  0.317
2014 Van Eenennaam A, Neibergs H, Seabury C, Taylor J, Wang Z, Scraggs E, Schnabel RD, Decker J, Wojtowicz A, Aly S, Davis J, Blanchard P, Crossley B, Rossitto P, Lehenbauer T, et al. Results of the BRD CAP project: progress toward identifying genetic markers associated with BRD susceptibility. Animal Health Research Reviews / Conference of Research Workers in Animal Diseases. 15: 157-60. PMID 25384903 DOI: 10.1017/S1466252314000231  0.309
2014 Brito BP, Aly SS, Anderson RJ, Fossler CP, Garry FB, Gardner IA. Association between caudal fold tuberculin test responses and results of an ELISA for Mycobacterium avium subsp paratuberculosis and mycobacterial culture of feces in tuberculosis-free dairy herds. Journal of the American Veterinary Medical Association. 244: 582-7. PMID 24548233 DOI: 10.2460/Javma.244.5.582  0.551
2014 Aly SS, Zhao J, Li B, Jiang J. Reliability of environmental sampling culture results using the negative binomial intraclass correlation coefficient. Springerplus. 3: 40. PMID 24516783 DOI: 10.1186/2193-1801-3-40  0.322
2014 Murai K, Lehenbauer TW, Champagne JD, Glenn K, Aly SS. Cost-effectiveness of diagnostic strategies using quantitative real-time PCR and bacterial culture to identify contagious mastitis cases in large dairy herds. Preventive Veterinary Medicine. 113: 522-35. PMID 24485275 DOI: 10.1016/J.Prevetmed.2014.01.001  0.375
2014 Aly SS, Rossow HA, Acetoze G, Lehenbauer TW, Payne M, Meyer D, Maas J, Hoar B. Survey of beef quality assurance on California dairies. Journal of Dairy Science. 97: 1348-57. PMID 24418277 DOI: 10.3168/Jds.2013-6856  0.317
2013 Glover AD, Puschner B, Rossow HA, Lehenbauer TW, Champagne JD, Blanchard PC, Aly SS. A double-blind block randomized clinical trial on the effect of zinc as a treatment for diarrhea in neonatal Holstein calves under natural challenge conditions Preventive Veterinary Medicine. 112: 338-347. PMID 24074841 DOI: 10.1016/J.Prevetmed.2013.09.001  0.317
2013 Rossow HA, Aly SS. Variation in nutrients formulated and nutrients supplied on 5 California dairies Journal of Dairy Science. 96: 7371-7381. PMID 24035027 DOI: 10.3168/Jds.2013-7084  0.321
2013 Arruda AG, Godden S, Rapnicki P, Gorden P, Timms L, Aly SS, Lehenbauer TW, Champagne J. Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: II. Cow health and performance in early lactation Journal of Dairy Science. 96: 6390-6399. PMID 23958025 DOI: 10.3168/Jds.2013-6705  0.343
2013 Pithua P, Aly SS, Haines DM, Champagne JD, Middleton JR, Poock SE. Efficacy of feeding a lacteal-derived colostrum replacer or pooled maternal colostrum with a low IgG concentration for prevention of failure of passive transfer in dairy calves. Journal of the American Veterinary Medical Association. 243: 277-82. PMID 23822086 DOI: 10.2460/Javma.243.2.277  0.302
2013 Arruda AG, Godden S, Rapnicki P, Gorden P, Timms L, Aly SS, Lehenbauer TW, Champagne J. Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: I. Quarter-level outcomes Journal of Dairy Science. DOI: 10.3168/Jds.2012-6461  0.363
2012 Aly SS, Anderson RJ, Whitlock RH, Fyock TL, McAdams SC, Byrem TM, Jiang J, Adaska JM, Gardner IA. Cost-effectiveness of diagnostic strategies to identify Mycobacterium avium subspecies paratuberculosis super-shedder cows in a large dairy herd using antibody enzyme-linked immunosorbent assays, quantitative real-time polymerase chain reaction, and bacterial culture. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 24: 821-32. PMID 22807510 DOI: 10.1177/1040638712452107  0.562
2010 Aly SS, Mangold BL, Whitlock RH, Sweeney RW, Anderson RJ, Jiang J, Schukken YH, Hovingh E, Wolfgang D, Van Kessel JA, Karns JS, Lombard JE, Smith JM, Gardner IA. Correlation between Herrold egg yolk medium culture and real-time quantitative polymerase chain reaction results for Mycobacterium avium subspecies paratuberculosis in pooled fecal and environmental samples. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 22: 677-83. PMID 20807920 DOI: 10.1177/104063871002200501  0.564
2010 Aly SS, Anderson RJ, Adaska JM, Jiang J, Gardner IA. Association between Mycobacterium avium subspecies paratuberculosis infection and milk production in two California dairies. Journal of Dairy Science. 93: 1030-40. PMID 20172223 DOI: 10.3168/Jds.2009-2611  0.566
2009 Aly SS, Anderson RJ, Whitlock RH, Fyock TL, McAdams S, Adaska JM, Jiang J, Gardner IA. Reliability of environmental sampling to quantify Mycobacterium avium subspecies paratuberculosis on California free-stall dairies. Journal of Dairy Science. 92: 3634-42. PMID 19620644 DOI: 10.3168/Jds.2008-1680  0.561
2007 Hines ME, Stiver S, Giri D, Whittington L, Watson C, Johnson J, Musgrove J, Pence M, Hurley D, Baldwin C, Gardner IA, Aly S. Efficacy of spheroplastic and cell-wall competent vaccines for Mycobacterium avium subsp. paratuberculosis in experimentally-challenged baby goats. Veterinary Microbiology. 120: 261-83. PMID 17123751 DOI: 10.1016/J.Vetmic.2006.10.030  0.476
2005 Aly SS, Thurmond MC. Evaluation of Mycobacterium avium subsp paratuberculosis infection of dairy cows attributable to infection status of the dam. Journal of the American Veterinary Medical Association. 227: 450-4. PMID 16121613 DOI: 10.2460/Javma.2005.227.450  0.364
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