| Year |
Citation |
Score |
| 2016 |
Sundstrom A, Bar-Sagi D, Mishra B. Simulating Heterogeneous Tumor Cell Populations. Plos One. 11: e0168984. PMID 28030620 DOI: 10.1371/Journal.Pone.0168984 |
0.727 |
|
| 2016 |
Caravagna G, Graudenzi A, Ramazzotti D, Sanz-Pamplona R, De Sano L, Mauri G, Moreno V, Antoniotti M, Mishra B. Algorithmic methods to infer the evolutionary trajectories in cancer progression. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357673 DOI: 10.1073/Pnas.1520213113 |
0.347 |
|
| 2016 |
Sundstrom A, Grabocka E, Bar-Sagi D, Mishra B. Histological Image Processing Features Induce a Quantitative Characterization of Chronic Tumor Hypoxia. Plos One. 11: e0153623. PMID 27093539 DOI: 10.1371/Journal.Pone.0153623 |
0.725 |
|
| 2016 |
De Sano L, Caravagna G, Ramazzotti D, Graudenzi A, Mauri G, Mishra B, Antoniotti M. TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data. Bioinformatics (Oxford, England). PMID 26861821 DOI: 10.1093/Bioinformatics/Btw035 |
0.333 |
|
| 2016 |
Casey W, Weaver R, Morales JA, Wright E, Mishra B. Epistatic Signaling and Minority Games, the Adversarial Dynamics in Social Technological Systems Mobile Networks and Applications. 21: 161-174. DOI: 10.1007/S11036-016-0705-9 |
0.304 |
|
| 2014 |
Olde Loohuis L, Loohuis LO, Caravagna G, Graudenzi A, Ramazzotti D, Mauri G, Antoniotti M, Mishra B. Inferring tree causal models of cancer progression with probability raising. Plos One. 9: e108358. PMID 25299648 DOI: 10.1371/Journal.Pone.0108358 |
0.358 |
|
| 2013 |
Jee J, Sundstrom A, Massey SE, Mishra B. What can information-asymmetric games tell us about the context of Crick's 'frozen accident'? Journal of the Royal Society, Interface / the Royal Society. 10: 20130614. PMID 23985735 DOI: 10.1098/Rsif.2013.0614 |
0.724 |
|
| 2012 |
Vezzi F, Narzisi G, Mishra B. Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons. Plos One. 7: e52210. PMID 23284938 DOI: 10.1371/Journal.Pone.0052210 |
0.702 |
|
| 2012 |
Sundstrom A, Cirrone S, Paxia S, Hsueh C, Kjolby R, Gimzewski JK, Reed J, Mishra B. Image analysis and length estimation of biomolecules using AFM. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 16: 1200-7. PMID 22759526 DOI: 10.1109/TITB.2012.2206819 |
0.744 |
|
| 2012 |
Reed J, Hsueh C, Lam ML, Kjolby R, Sundstrom A, Mishra B, Gimzewski JK. Identifying individual DNA species in a complex mixture by precisely measuring the spacing between nicking restriction enzymes with atomic force microscope. Journal of the Royal Society, Interface / the Royal Society. 9: 2341-50. PMID 22456455 DOI: 10.1098/Rsif.2012.0024 |
0.736 |
|
| 2012 |
Vezzi F, Narzisi G, Mishra B. Feature-by-feature--evaluating de novo sequence assembly. Plos One. 7: e31002. PMID 22319599 DOI: 10.1371/Journal.Pone.0031002 |
0.71 |
|
| 2011 |
Menges F, Narzisi G, Mishra B. TotalReCaller: improved accuracy and performance via integrated alignment and base-calling. Bioinformatics (Oxford, England). 27: 2330-7. PMID 21724593 DOI: 10.1093/Bioinformatics/Btr393 |
0.694 |
|
| 2011 |
Narzisi G, Mishra B. Comparing de novo genome assembly: the long and short of it. Plos One. 6: e19175. PMID 21559467 DOI: 10.1371/Journal.Pone.0019175 |
0.704 |
|
| 2011 |
Mitrofanova A, Pavlovic V, Mishra B. Prediction of protein functions with gene ontology and interspecies protein homology data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 775-84. PMID 21393654 DOI: 10.1109/Tcbb.2010.15 |
0.661 |
|
| 2011 |
Narzisi G, Mishra B. Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons. Bioinformatics (Oxford, England). 27: 153-60. PMID 21088026 DOI: 10.1093/Bioinformatics/Btq646 |
0.717 |
|
| 2010 |
Cherepinsky V, Hashmi G, Mishra B. Competitive hybridization models. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 051914. PMID 21230507 DOI: 10.1103/Physreve.82.051914 |
0.759 |
|
| 2010 |
Mitrofanova A, Mishra B. On a novel coalescent model for genome-wide evolution of copy number variations. International Journal of Data Mining and Bioinformatics. 4: 300-15. PMID 20681481 |
0.677 |
|
| 2010 |
Mitrofanova A, Kleinberg S, Carlton J, Kasif S, Mishra B. Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle. Artificial Intelligence in Medicine. 49: 167-76. PMID 20580212 DOI: 10.1016/J.Artmed.2010.04.013 |
0.665 |
|
| 2010 |
Ramakrishnan N, Tadepalli S, Watson LT, Helm RF, Antoniotti M, Mishra B. Reverse engineering dynamic temporal models of biological processes and their relationships. Proceedings of the National Academy of Sciences of the United States of America. 107: 12511-6. PMID 20571120 DOI: 10.1073/Pnas.1006283107 |
0.349 |
|
| 2009 |
Smith SW, Portelli I, Narzisi G, Nelson LS, Menges F, Rekow ED, Mincer JS, Mishra B, Goldfrank LR. A novel approach to multihazard modeling and simulation. Disaster Medicine and Public Health Preparedness. 3: 75-87. PMID 19491602 DOI: 10.1097/Dmp.0B013E3181A88899 |
0.646 |
|
| 2009 |
Mishra B. Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology. Journal of the Royal Society, Interface / the Royal Society. 6: 575-97. PMID 19364723 DOI: 10.1098/Rsif.2008.0546 |
0.301 |
|
| 2009 |
Mitrofanova A, Farach-Colton M, Mishra B. Efficient and robust prediction algorithms for protein complexes using Gomory-Hu trees. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 215-26. PMID 19209703 DOI: 10.1142/9789812836939_0021 |
0.634 |
|
| 2009 |
Kleinberg S, Mishra B. Metamorphosis: the Coming Transformation of Translational Systems Biology Acm Queue. 7: 40-52. DOI: 10.1145/1626135.1629775 |
0.303 |
|
| 2008 |
Ryu S, Lin SC, Ugel N, Antoniotti M, Mishra B. Mathematical modeling of the formation of apoptosome in intrinsic pathway of apoptosis. Systems and Synthetic Biology. 2: 49-66. PMID 19333786 DOI: 10.1007/S11693-009-9022-Y |
0.654 |
|
| 2008 |
Wu H, Kim KJ, Mehta K, Paxia S, Sundstrom A, Anantharaman T, Kuraishy AI, Doan T, Ghosh J, Pyle AD, Clark A, Lowry W, Fan G, Baxter T, Mishra B, et al. Copy number variant analysis of human embryonic stem cells. Stem Cells (Dayton, Ohio). 26: 1484-9. PMID 18369100 DOI: 10.1634/Stemcells.2007-0993 |
0.739 |
|
| 2008 |
Ryu S, Do Y, Fitch DH, Kim W, Mishra B. Dropout alignment allows homology recognition and evolutionary analysis of rDNA intergenic spacers. Journal of Molecular Evolution. 66: 368-83. PMID 18363028 DOI: 10.1007/S00239-008-9090-8 |
0.684 |
|
| 2008 |
Casagrande A, Piazza C, Policriti A, Mishra B. Inclusion dynamics hybrid automata Information and Computation. 206: 1394-1424. DOI: 10.1016/J.Ic.2008.09.001 |
0.311 |
|
| 2007 |
Reed J, Mishra B, Pittenger B, Magonov S, Troke J, Teitell MA, Gimzewski JK. Single molecule transcription profiling with AFM. Nanotechnology. 18: 44032. PMID 20721301 DOI: 10.1088/0957-4484/18/4/044032 |
0.33 |
|
| 2007 |
Mathew JP, Taylor BS, Bader GD, Pyarajan S, Antoniotti M, Chinnaiyan AM, Sander C, Burakoff SJ, Mishra B. From bytes to bedside: data integration and computational biology for translational cancer research. Plos Computational Biology. 3: e12. PMID 17319736 DOI: 10.1371/Journal.Pcbi.0030012 |
0.349 |
|
| 2007 |
Lerman G, McQuown J, Blais A, Dynlacht BD, Chen G, Mishra B. Functional genomics via multiscale analysis: application to gene expression and ChIP-on-chip data. Bioinformatics (Oxford, England). 23: 314-20. PMID 17164284 DOI: 10.1093/Bioinformatics/Btl606 |
0.312 |
|
| 2006 |
Ionita I, Daruwala RS, Mishra B. Mapping tumor-suppressor genes with multipoint statistics from copy-number-variation data. American Journal of Human Genetics. 79: 13-22. PMID 16773561 DOI: 10.1086/504354 |
0.782 |
|
| 2006 |
West J, Healy J, Wigler M, Casey W, Mishra B. Validation of S. pombe sequence assembly by microarray hybridization. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 1-20. PMID 16472019 DOI: 10.1089/Cmb.2006.13.1 |
0.335 |
|
| 2006 |
Mysore V, Mishra B. Algorithmic Algebraic Model Checking III: Approximate Methods Electronic Notes in Theoretical Computer Science. 149: 61-77. DOI: 10.1016/J.Entcs.2005.11.017 |
0.76 |
|
| 2005 |
Barbano PE, Spivak M, Feng J, Antoniotti M, Mishra B. A coherent framework for multiresolution analysis of biological networks with "memory": Ras pathway, cell cycle, and immune system. Proceedings of the National Academy of Sciences of the United States of America. 102: 6245-50. PMID 15843460 DOI: 10.1073/Pnas.0500554102 |
0.338 |
|
| 2005 |
Zhou Y, Mishra B. Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling. Proceedings of the National Academy of Sciences of the United States of America. 102: 4051-6. PMID 15741274 DOI: 10.1073/Pnas.0407957102 |
0.362 |
|
| 2004 |
Daruwala RS, Rudra A, Ostrer H, Lucito R, Wigler M, Mishra B. A versatile statistical analysis algorithm to detect genome copy number variation. Proceedings of the National Academy of Sciences of the United States of America. 101: 16292-7. PMID 15534219 DOI: 10.1073/Pnas.0407247101 |
0.362 |
|
| 2004 |
Thomas EE, Srebro N, Sebat J, Navin N, Healy J, Mishra B, Wigler M. Distribution of short paired duplications in mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 10349-54. PMID 15240876 DOI: 10.1073/Pnas.0403727101 |
0.356 |
|
| 2003 |
Mishra B, Daruwala RS, Zhou Y, Ugel N, Policriti A, Antoniotti M, Paxia S, Rejali M, Rudra A, Cherepinsky V, Silver N, Casey W, Piazza C, Simeoni M, Barbano P, et al. A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes. Omics : a Journal of Integrative Biology. 7: 253-68. PMID 14583115 DOI: 10.1089/153623103322452387 |
0.692 |
|
| 2003 |
Cherepinsky V, Feng J, Rejali M, Mishra B. Shrinkage-based similarity metric for cluster analysis of microarray data. Proceedings of the National Academy of Sciences of the United States of America. 100: 9668-73. PMID 12902543 DOI: 10.1073/Pnas.1633770100 |
0.749 |
|
| 2003 |
Antoniotti M, Policriti A, Ugel N, Mishra B. Model building and model checking for biochemical processes. Cell Biochemistry and Biophysics. 38: 271-86. PMID 12794268 DOI: 10.1385/Cbb:38:3:271 |
0.375 |
|
| 2002 |
Paxia S, Rudra A, Zhou Y, Mishra B. A random walk down the genomes: DNA evolution in valis Computer. 35. DOI: 10.1109/Mc.2002.1016904 |
0.393 |
|
| 2000 |
Parida L, Mishra B. Partitioning single-molecule maps into multiple populations: Algorithms and probabilistic analysis Discrete Applied Mathematics. 104: 203-227. DOI: 10.1016/S0166-218X(00)00191-8 |
0.305 |
|
| 1999 |
Lai Z, Jing J, Aston C, Clarke V, Apodaca J, Dimalanta ET, Carucci DJ, Gardner MJ, Mishra B, Anantharaman TS, Paxia S, Hoffman SL, Craig Venter J, Huff EJ, Schwartz DC. A shotgun optical map of the entire Plasmodium falciparum genome. Nature Genetics. 23: 309-13. PMID 10610179 DOI: 10.1038/15484 |
0.328 |
|
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