| Year |
Citation |
Score |
| 2023 |
Bleich RM, Li C, Sun S, Ahn JH, Dogan B, Barlogio CJ, Broberg CA, Franks AR, Bulik-Sullivan E, Carroll IM, Simpson KW, Fodor AA, Arthur JC. A consortia of clinical E. coli strains with distinct in vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflammation-susceptible mice. Microbiome. 11: 277. PMID 38124090 DOI: 10.1186/s40168-023-01710-y |
0.343 |
|
| 2023 |
Bleich RM, Li C, Sun S, Barlogio CJ, Broberg CA, Franks AR, Bulik-Sullivan E, Dogan B, Simpson KW, Carroll IM, Fodor AA, Arthur JC. A consortia of clinical E. coli strains with distinct in-vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflammation-susceptible mice. Research Square. PMID 37214858 DOI: 10.21203/rs.3.rs-2899665/v1 |
0.321 |
|
| 2022 |
Zhang S, Morgan XC, Dogan B, Martin FP, Strickler SR, Oka A, Herzog J, Liu B, Dowd SE, Huttenhower C, Pichaud M, Dogan EI, Satsangi J, Longman R, Yantiss R, et al. Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn's disease. Jci Insight. PMID 35413017 DOI: 10.1172/jci.insight.157013 |
0.302 |
|
| 2021 |
Wang J, Bleich RM, Zarmer S, Zhang S, Dogan B, Simpson KW, Arthur JC. Long-read sequencing to interrogate strain-level variation among adherent-invasive Escherichia coli isolated from human intestinal tissue. Plos One. 16: e0259141. PMID 34710159 DOI: 10.1371/journal.pone.0259141 |
0.333 |
|
| 2020 |
Manchester AC, Dogan B, Guo Y, Simpson KW. Escherichia coli-associated granulomatous colitis in dogs treated according to antimicrobial susceptibility profiling. Journal of Veterinary Internal Medicine. PMID 33321554 DOI: 10.1111/jvim.15995 |
0.302 |
|
| 2020 |
Montrose DC, Nishiguchi R, Basu S, Staab HA, Zhou XK, Wang H, Meng L, Johncilla M, Cubillos-Ruiz JR, Morales DK, Wells MT, Simpson KW, Zhang S, Dogan B, Jiao C, et al. Dietary Fructose Alters the Composition, Localization and Metabolism of Gut Microbiota in Association with Worsening Colitis. Cellular and Molecular Gastroenterology and Hepatology. PMID 32961355 DOI: 10.1016/J.Jcmgh.2020.09.008 |
0.305 |
|
| 2020 |
Dogan B, Zhang S, Kalla SE, Dogan EI, Guo C, Ang CR, Simpson KW. Molecular and Phenotypic Characterization of Associated with Granulomatous Colitis of Boxer Dogs. Antibiotics (Basel, Switzerland). 9. PMID 32854367 DOI: 10.3390/Antibiotics9090540 |
0.386 |
|
| 2020 |
Britton GJ, Contijoch EJ, Spindler MP, Aggarwala V, Dogan B, Bongers G, San Mateo L, Baltus A, Das A, Gevers D, Borody TJ, Kaakoush NO, Kamm MA, Mitchell H, Paramsothy S, et al. Defined microbiota transplant restores Th17/RORγt regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817490 DOI: 10.1073/Pnas.1922189117 |
0.337 |
|
| 2020 |
Zhang S, Dogan B, Guo C, Herlekar D, Stewart K, Scherl EJ, Simpson KW. Short Chain Fatty Acids Modulate the Growth and Virulence of Pathosymbiont and Host Response. Antibiotics (Basel, Switzerland). 9. PMID 32751519 DOI: 10.3390/Antibiotics9080462 |
0.343 |
|
| 2020 |
Bleich R, Barlogio C, Franks A, Zarmer S, Broberg C, Bulik-Sullivan E, Dogan B, Simpson K, Carroll I, Gharaibeh R, Arthur J. Human Intestinal AIEC Strains Alter the Mucosal Microbiome and Establish a Niche for AIEC and Non‐AIEC Strains in
Il10
−
/
−
Mice The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.02969 |
0.31 |
|
| 2019 |
Kitamoto S, Alteri CJ, Rodrigues M, Nagao-Kitamoto H, Sugihara K, Himpsl SD, Bazzi M, Miyoshi M, Nishioka T, Hayashi A, Morhardt TL, Kuffa P, Grasberger H, El-Zaatari M, Bishu S, ... ... Dogan B, et al. Dietary L-serine confers a competitive fitness advantage to Enterobacteriaceae in the inflamed gut. Nature Microbiology. PMID 31686025 DOI: 10.1038/S41564-019-0591-6 |
0.342 |
|
| 2019 |
Ellermann M, Gharaibeh RZ, Fulbright L, Dogan B, Moore LN, Broberg CA, Lopez LR, Rothemich AM, Herzog JW, Rogala A, Gordon IO, Rieder F, Brouwer CR, Simpson KW, Jobin C, et al. Yersiniabactin producing AIEC promote inflammation-associated fibrosis in gnotobiotic mice. Infection and Immunity. PMID 31481410 DOI: 10.1128/Iai.00587-19 |
0.358 |
|
| 2018 |
Schmitz JM, Tonkonogy SL, Dogan B, Leblond A, Whitehead KJ, Kim SC, Simpson KW, Sartor RB. Murine Adherent and Invasive E. coli Induces Chronic Inflammation and Immune Responses in the Small and Large Intestines of Monoassociated IL-10-/- Mice Independent of Long Polar Fimbriae Adhesin A. Inflammatory Bowel Diseases. PMID 30576451 DOI: 10.1093/Ibd/Izy386 |
0.366 |
|
| 2018 |
Azizi M, Zaferani M, Dogan B, Zhang S, Simpson KW, Abbaspourrad A. Nanoliter-Sized Microchamber/Microarray Microfluidic Platform for Antibiotic Susceptibility Testing. Analytical Chemistry. PMID 30474959 DOI: 10.1021/Acs.Analchem.8B03817 |
0.318 |
|
| 2018 |
Dogan B, Belcher-Timme HF, Dogan EI, Jiang ZD, DuPont HL, Synder N, Yang S, Chandler B, Scherl EJ, Simpson KW. Evaluation of Escherichia coli pathotypes associated with Irritable Bowel Syndrome. Fems Microbiology Letters. PMID 30299475 DOI: 10.1093/Femsle/Fny249 |
0.433 |
|
| 2018 |
Zhang S, Fu J, Dogan B, Scherl EJ, Simpson KW. 5-Aminosalicylic acid downregulates the growth and virulence of Escherichia coli associated with IBD and colorectal cancer, and upregulates host anti-inflammatory activity. The Journal of Antibiotics. PMID 30050110 DOI: 10.1038/S41429-018-0081-8 |
0.422 |
|
| 2018 |
Dogan B, Fu J, Zhang S, Scherl EJ, Simpson KW. Rifaximin decreases virulence of Crohn's disease-associated Escherichia coli and epithelial inflammatory responses. The Journal of Antibiotics. PMID 29410518 DOI: 10.1038/S41429-017-0022-Y |
0.426 |
|
| 2017 |
Viladomiu M, Kivolowitz C, Abdulhamid A, Dogan B, Victorio D, Castellanos JG, Woo V, Teng F, Tran NL, Sczesnak A, Chai C, Kim M, Diehl GE, Ajami NJ, Petrosino JF, et al. IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation. Science Translational Medicine. 9. PMID 28179509 DOI: 10.1126/Scitranslmed.Aaf9655 |
0.403 |
|
| 2017 |
Zhang S, Fu J, Dogan B, Simpson KW. Aminosalicylic Acid Down-Regulates Growth and Virulence of Crohn's Disease and Colorectal Cancer-Associated Escherichia Coli Gastroenterology. 152. DOI: 10.1016/S0016-5085(17)33414-5 |
0.351 |
|
| 2017 |
Dogan B, Fu J, Zhang S, Simpson KW. Rifaximin Decreases Virulence of Crohns Disease Associated E. coli and Epithelial Inflammatory Responses Gastroenterology. 152. DOI: 10.1016/S0016-5085(17)32840-8 |
0.407 |
|
| 2015 |
Richards VP, Lefébure T, Pavinski Bitar PD, Dogan B, Simpson KW, Schukken YH, Stanhope MJ. Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli. Plos One. 10: e0119799. PMID 25807497 DOI: 10.1371/Journal.Pone.0119799 |
0.453 |
|
| 2014 |
Dogan B, Suzuki H, Herlekar D, Sartor RB, Campbell BJ, Roberts CL, Stewart K, Scherl EJ, Araz Y, Bitar PP, Lefébure T, Chandler B, Schukken YH, Stanhope MJ, Simpson KW. Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of propanediol and iron and M-cell translocation. Inflammatory Bowel Diseases. 20: 1919-32. PMID 25230163 DOI: 10.1097/Mib.0000000000000183 |
0.426 |
|
| 2014 |
Lippolis JD, Brunelle BW, Reinhardt TA, Sacco RE, Nonnecke BJ, Dogan B, Simpson K, Schukken YH. Proteomic analysis reveals protein expression differences in Escherichia coli strains associated with persistent versus transient mastitis. Journal of Proteomics. 108: 373-81. PMID 24954099 DOI: 10.1016/J.Jprot.2014.06.008 |
0.401 |
|
| 2014 |
Chai C, Dogan B, Simpson KW, Scherl EJ, Longman RS. Tu1768 Characterization of the Mucosal-Associated Microbiota in Crohn's Disease-Associated Spondyloarthropathy Gastroenterology. 146: S-838. DOI: 10.1016/S0016-5085(14)63044-4 |
0.339 |
|
| 2013 |
Manchester AC, Hill S, Sabatino B, Armentano R, Carroll M, Kessler B, Miller M, Dogan B, McDonough SP, Simpson KW. Association between granulomatous colitis in French Bulldogs and invasive Escherichia coli and response to fluoroquinolone antimicrobials. Journal of Veterinary Internal Medicine / American College of Veterinary Internal Medicine. 27: 56-61. PMID 23206120 DOI: 10.1111/Jvim.12020 |
0.394 |
|
| 2013 |
Kothary V, Scherl EJ, Bosworth B, Jiang ZD, Dupont HL, Harel J, Simpson KW, Dogan B. Rifaximin resistance in Escherichia coli associated with inflammatory bowel disease correlates with prior rifaximin use, mutations in rpoB, and activity of Phe-Arg-β-naphthylamide-inhibitable efflux pumps. Antimicrobial Agents and Chemotherapy. 57: 811-7. PMID 23183443 DOI: 10.1128/Aac.02163-12 |
0.442 |
|
| 2013 |
Dogan B, Scherl E, Bosworth B, Yantiss R, Altier C, McDonough PL, Jiang ZD, Dupont HL, Garneau P, Harel J, Rishniw M, Simpson KW. Multidrug resistance is common in Escherichia coli associated with ileal Crohn's disease. Inflammatory Bowel Diseases. 19: 141-50. PMID 22508665 DOI: 10.1002/Ibd.22971 |
0.425 |
|
| 2013 |
Chandler B, Dogan B, Scherl EJ, Simpson KW. Sa1806 Molecular and Functional Characterization of Fimh in Crohn's Disease Associated E. Coli Gastroenterology. 144. DOI: 10.1016/S0016-5085(13)61117-8 |
0.388 |
|
| 2013 |
Dogan B, Chandler A, Araz Y, Chandler B, Sartor RB, Simpson KW. Sa1805 Identification of Genes Required for Epithelial Cell Invasion in Adherent and Invasive E. Coli NC101 by Signature-Tagged Mutagenesis Gastroenterology. 144. DOI: 10.1016/S0016-5085(13)61116-6 |
0.356 |
|
| 2012 |
Arthur JC, Perez-Chanona E, Mühlbauer M, Tomkovich S, Uronis JM, Fan TJ, Campbell BJ, Abujamel T, Dogan B, Rogers AB, Rhodes JM, Stintzi A, Simpson KW, Hansen JJ, Keku TO, et al. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science (New York, N.Y.). 338: 120-3. PMID 22903521 DOI: 10.1126/Science.1224820 |
0.361 |
|
| 2012 |
Craven M, Egan CE, Dowd SE, McDonough SP, Dogan B, Denkers EY, Bowman D, Scherl EJ, Simpson KW. Inflammation drives dysbiosis and bacterial invasion in murine models of ileal Crohn's disease. Plos One. 7: e41594. PMID 22848538 DOI: 10.1371/Journal.Pone.0041594 |
0.34 |
|
| 2012 |
Dogan B, Rishniw M, Bruant G, Harel J, Schukken YH, Simpson KW. Phylogroup and lpfA influence epithelial invasion by mastitis associated Escherichia coli. Veterinary Microbiology. 159: 163-70. PMID 22510704 DOI: 10.1016/J.Vetmic.2012.03.033 |
0.427 |
|
| 2012 |
Dogan B, Kothary V, Scherl EJ, Jiang Z, DuPont HL, Harel J, Simpson KW. Mo1765 High Level Rifaximin Resistance in Escherichia coli Associated With Inflammatory Bowel Disease Correlates With Prior Rifaximin use and Mutations in Rpob Gastroenterology. 142: S-679-S-680. DOI: 10.1016/S0016-5085(12)62619-5 |
0.341 |
|
| 2012 |
Arthur JC, Tomkovich SE, Muehlbauer M, Fan T, Dogan B, Perez-Chanona E, Campbell BJ, Rhodes JM, Simpson KW, Hansen JJ, Jobin C. Mo1603 The E. coli Genotoxic Island Pks Promotes Colorectal Cancer (CRC) Without Impacting Intestinal Inflammation Gastroenterology. 142. DOI: 10.1016/S0016-5085(12)62458-5 |
0.328 |
|
| 2011 |
Almeida RA, Dogan B, Klaessing S, Schukken YH, Oliver SP. Intracellular fate of strains of Escherichia coli isolated from dairy cows with acute or chronic mastitis. Veterinary Research Communications. 35: 89-101. PMID 21207146 DOI: 10.1007/S11259-010-9455-5 |
0.392 |
|
| 2011 |
Simpson K, Dogan B, Bitar PP, Schukken Y, Stanhope M. Comparative genomics of adherent-invasive Escherichia coli (AIEC) associated with Crohn's disease. O-003. Inflammatory Bowel Diseases. 17: S1-S1. DOI: 10.1093/Ibd/17.Supplement1.S1A |
0.353 |
|
| 2011 |
Schmitz JM, Tonkonogy SL, Yedinak A, Whitehead KJ, Kreuk F, Dogan B, Simpson KW, Sartor RB. Murine Adherent and Invasive E. coli Strains Induce Chronic Small Bowel Inflammation in Monoassociated IL-10−/− Mice Gastroenterology. 140. DOI: 10.1016/S0016-5085(11)60113-3 |
0.327 |
|
| 2011 |
Dogan B, Suzuki H, Herlekar D, Araz Y, Bitar PD, Sartor RB, Schukken YH, Scherl EJ, Stanhope M, Simpson KW. Comparative Genomics of Crohn's Associated Adherent-Invasive Escherichia coli (AIEC) Reveals Association of AIEC Pathotype With PDU and lpfA, Which Influence Pathogenic Behavior of Bacteria in Cultured Cells Gastroenterology. 140: S-29. DOI: 10.1016/S0016-5085(11)60111-X |
0.322 |
|
| 2010 |
Craven M, Dogan B, Schukken A, Volkman M, Chandler A, McDonough PL, Simpson KW. Antimicrobial resistance impacts clinical outcome of granulomatous colitis in boxer dogs. Journal of Veterinary Internal Medicine / American College of Veterinary Internal Medicine. 24: 819-24. PMID 20492483 DOI: 10.1111/J.1939-1676.2010.0527.X |
0.394 |
|
| 2010 |
Sheldon IM, Rycroft AN, Dogan B, Craven M, Bromfield JJ, Chandler A, Roberts MH, Price SB, Gilbert RO, Simpson KW. Specific strains of Escherichia coli are pathogenic for the endometrium of cattle and cause pelvic inflammatory disease in cattle and mice. Plos One. 5: e9192. PMID 20169203 DOI: 10.1371/Journal.Pone.0009192 |
0.433 |
|
| 2010 |
Schmitz JM, Tonkonogy SL, Dogan B, Yedinak A, Whitehead KJ, Jarvis W, Sartor RB, Simpson KW. T1786 Chronic Small Intestinal Inflammation in IL-10−/− Mice Monoassociated With an Adherent and Invasive E. coli Strain Isolated From a Mouse With Experimental Ileitis Gastroenterology. 138. DOI: 10.1016/S0016-5085(10)62664-9 |
0.373 |
|
| 2010 |
Craven M, Egan CE, Dogan B, Dowd SE, Denkers E, McDonough S, Scherl EJ, Simpson KW. 68 CCR2 Deletion Ameloriates Ileal Inflammation, Limits Dysbiosis, and Prevents Invasion by Adherent and Invasive E. coli (AIEC) in Toxoplasma gondii Infected Mice Gastroenterology. 138: S-14. DOI: 10.1016/S0016-5085(10)60063-7 |
0.346 |
|
| 2009 |
Mansfield CS, James FE, Craven M, Davies DR, O'Hara AJ, Nicholls PK, Dogan B, MacDonough SP, Simpson KW. Remission of histiocytic ulcerative colitis in Boxer dogs correlates with eradication of invasive intramucosal Escherichia coli. Journal of Veterinary Internal Medicine / American College of Veterinary Internal Medicine. 23: 964-9. PMID 19678891 DOI: 10.1111/J.1939-1676.2009.0363.X |
0.407 |
|
| 2009 |
Dogan B, Scherl E, Bosworth B, Yantiss R, Volkmann M, Oh J, Klaessig S, Simpson K. Comparative analysis of E. Coli associated with Inflammatory Bowel Disease across species: P-0083. Inflammatory Bowel Diseases. 15. DOI: 10.1097/00054725-200912002-00091 |
0.371 |
|
| 2009 |
Dogan B, Scherl EJ, Bosworth BP, McDonough PL, Jiang Z, DuPont H, Bruant G, Harel J, Simpson KW. W1641 Escherichia coli Associated with Crohn's Disease Frequently Manifest Resistance to Commonly Recommended Antibiotics Gastroenterology. 136: A-708. DOI: 10.1016/S0016-5085(09)63265-0 |
0.401 |
|
| 2009 |
Dogan B, Rishniw M, Bruant G, Bosworth BP, Harel J, Schukken Y, Scherl EJ, Simpson KW. W1625 The Ability of Crohn's Associated E. coli to Invade CACO-2 Cells Is Related to the Presence of a Gene Encoding Long Polar Fimbriae Gastroenterology. 136: A-705. DOI: 10.1016/S0016-5085(09)63249-2 |
0.431 |
|
| 2009 |
Craven M, Egan CE, Dogan B, Denkers E, McDonough S, Scherl EJ, Simpson KW. 69 Acute Intestinal Inflammation Decreases Microbial Diversity and Triggers the Proliferation of Adherent and Invasive E. coli Gastroenterology. 136: A-12. DOI: 10.1016/S0016-5085(09)60059-7 |
0.387 |
|
| 2008 |
Dogan B, Simpson KW. Microflora in Crohn's disease: the emergence of adherent and invasive Escherichia coli. Expert Review of Clinical Immunology. 4: 133-7. PMID 20477044 DOI: 10.1586/1744666X.4.2.133 |
0.393 |
|
| 2008 |
Liu B, Hansen JJ, Holt LC, Kim SC, Dogan B, Simpson KW, Sartor RB. W1183 Differential In Vitro Epithelial Translocation and Resistance to Phagocyte Uptake and Killing By Escherichia coli Strains Correlate with Their Ability to Induce Colitis in Monoassociated IL-10−/− Mice Gastroenterology. 134. DOI: 10.1016/S0016-5085(08)63035-8 |
0.327 |
|
| 2007 |
Baumgart M, Dogan B, Rishniw M, Weitzman G, Bosworth B, Yantiss R, Orsi RH, Wiedmann M, McDonough P, Kim SG, Berg D, Schukken Y, Scherl E, Simpson KW. Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum. The Isme Journal. 1: 403-18. PMID 18043660 DOI: 10.1038/Ismej.2007.52 |
0.468 |
|
| 2006 |
Simpson KW, Dogan B, Rishniw M, Goldstein RE, Klaessig S, McDonough PL, German AJ, Yates RM, Russell DG, Johnson SE, Berg DE, Harel J, Bruant G, McDonough SP, Schukken YH. Adherent and invasive Escherichia coli is associated with granulomatous colitis in boxer dogs. Infection and Immunity. 74: 4778-92. PMID 16861666 DOI: 10.1128/Iai.00067-06 |
0.474 |
|
| 2006 |
Dogan B, Klaessig S, Rishniw M, Almeida RA, Oliver SP, Simpson K, Schukken YH. Adherent and invasive Escherichia coli are associated with persistent bovine mastitis. Veterinary Microbiology. 116: 270-82. PMID 16787715 DOI: 10.1016/J.Vetmic.2006.04.023 |
0.402 |
|
| 2005 |
Dogan B, Schukken YH, Santisteban C, Boor KJ. Distribution of serotypes and antimicrobial resistance genes among Streptococcus agalactiae isolates from bovine and human hosts. Journal of Clinical Microbiology. 43: 5899-906. PMID 16333073 DOI: 10.1128/Jcm.43.12.5899-5906.2005 |
0.585 |
|
| 2005 |
Sukhnanand S, Dogan B, Ayodele MO, Zadoks RN, Craver MP, Dumas NB, Schukken YH, Boor KJ, Wiedmann M. Molecular subtyping and characterization of bovine and human Streptococcus agalactiae isolates. Journal of Clinical Microbiology. 43: 1177-86. PMID 15750080 DOI: 10.1128/Jcm.43.3.1177-1186.2005 |
0.588 |
|
| 2004 |
Gray MJ, Zadoks RN, Fortes ED, Dogan B, Cai S, Chen Y, Scott VN, Gombas DE, Boor KJ, Wiedmann M. Listeria monocytogenes isolates from foods and humans form distinct but overlapping populations. Applied and Environmental Microbiology. 70: 5833-41. PMID 15466521 DOI: 10.1128/Aem.70.10.5833-5841.2004 |
0.571 |
|
| 2004 |
Dogan B, Boor KJ. Short communication: growth characteristics of Streptococcus uberis in UHT-treated milk. Journal of Dairy Science. 87: 813-5. PMID 15259215 DOI: 10.3168/Jds.S0022-0302(04)73225-7 |
0.542 |
|
| 2003 |
Dogan B, Boor KJ. Genetic diversity and spoilage potentials among Pseudomonas spp. isolated from fluid milk products and dairy processing plants. Applied and Environmental Microbiology. 69: 130-8. PMID 12513987 DOI: 10.1128/Aem.69.1.130-138.2003 |
0.585 |
|
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