Vishwanath Jogini - Publications

Affiliations: 
D. E. Shaw Research, New York, NY, United States 
Area:
Potassium channel, Molecular dynamics simulations

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Jensen MØ, Jogini V, Eastwood MP, Shaw DE. Atomic-level simulation of current-voltage relationships in single-file ion channels. The Journal of General Physiology. 141: 619-32. PMID 23589581 DOI: 10.1085/jgp.201210820  0.92
2012 Li Q, Jogini V, Wanderling S, Cortes DM, Perozo E. Expression, purification, and reconstitution of the voltage-sensing domain from Ci-VSP. Biochemistry. 51: 8132-42. PMID 22989304 DOI: 10.1021/bi300980q  0.92
2012 Raghuraman H, Cordero-Morales JF, Jogini V, Pan AC, Kollewe A, Roux B, Perozo E. Mechanism of Cd2+ coordination during slow inactivation in potassium channels. Structure (London, England : 1993). 20: 1332-42. PMID 22771214 DOI: 10.1016/j.str.2012.03.027  0.92
2012 Jensen MØ, Jogini V, Borhani DW, Leffler AE, Dror RO, Shaw DE. Mechanism of voltage gating in potassium channels. Science (New York, N.Y.). 336: 229-33. PMID 22499946 DOI: 10.1126/science.1216533  0.92
2011 Cordero-Morales JF, Jogini V, Chakrapani S, Perozo E. A multipoint hydrogen-bond network underlying KcsA C-type inactivation. Biophysical Journal. 100: 2387-93. PMID 21575572 DOI: 10.1016/j.bpj.2011.01.073  0.92
2011 Chakrapani S, Cordero-Morales JF, Jogini V, Pan AC, Cortes DM, Roux B, Perozo E. On the structural basis of modal gating behavior in K(+) channels. Nature Structural & Molecular Biology. 18: 67-74. PMID 21186363 DOI: 10.1038/nsmb.1968  0.92
2010 Contreras JE, Chen J, Lau AY, Jogini V, Roux B, Holmgren M. Voltage profile along the permeation pathway of an open channel. Biophysical Journal. 99: 2863-9. PMID 21044583 DOI: 10.1016/j.bpj.2010.08.053  0.92
2010 Dalmas O, Cuello LG, Jogini V, Cortes DM, Roux B, Perozo E. Structural dynamics of the magnesium-bound conformation of CorA in a lipid bilayer. Structure (London, England : 1993). 18: 868-78. PMID 20637423 DOI: 10.1016/j.str.2010.04.009  0.92
2010 Cuello LG, Jogini V, Cortes DM, Pan AC, Gagnon DG, Dalmas O, Cordero-Morales JF, Chakrapani S, Roux B, Perozo E. Structural basis for the coupling between activation and inactivation gates in K(+) channels. Nature. 466: 272-5. PMID 20613845 DOI: 10.1038/nature09136  0.92
2010 Cuello LG, Jogini V, Cortes DM, Perozo E. Structural mechanism of C-type inactivation in K(+) channels. Nature. 466: 203-8. PMID 20613835 DOI: 10.1038/nature09153  0.92
2010 Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K. Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel. Biophysical Journal. 98: 2189-98. PMID 20483327 DOI: 10.1016/j.bpj.2010.02.056  0.92
2010 Jensen MØ, Borhani DW, Lindorff-Larsen K, Maragakis P, Jogini V, Eastwood MP, Dror RO, Shaw DE. Principles of conduction and hydrophobic gating in K+ channels. Proceedings of the National Academy of Sciences of the United States of America. 107: 5833-8. PMID 20231479 DOI: 10.1073/pnas.0911691107  0.92
2010 Cuello LG, Jogini V, Cortes DM, Sompornpisut A, Purdy MD, Wiener MC, Perozo E. Design and characterization of a constitutively open KcsA. Febs Letters. 584: 1133-8. PMID 20153331 DOI: 10.1016/j.febslet.2010.02.015  0.92
2010 Cuello LG, Cortes DM, Jogini V, Sompornpisut A, Perozo E. A molecular mechanism for proton-dependent gating in KcsA. Febs Letters. 584: 1126-32. PMID 20138880 DOI: 10.1016/j.febslet.2010.02.003  0.92
2008 Lewis A, Jogini V, Blachowicz L, Lainé M, Roux B. Atomic constraints between the voltage sensor and the pore domain in a voltage-gated K+ channel of known structure. The Journal of General Physiology. 131: 549-61. PMID 18504314 DOI: 10.1085/jgp.200809962  0.92
2007 Cordero-Morales JF, Jogini V, Lewis A, Vásquez V, Cortes DM, Roux B, Perozo E. Molecular driving forces determining potassium channel slow inactivation. Nature Structural & Molecular Biology. 14: 1062-9. PMID 17922012 DOI: 10.1038/nsmb1309  0.92
2007 Jogini V, Roux B. Dynamics of the Kv1.2 voltage-gated K+ channel in a membrane environment. Biophysical Journal. 93: 3070-82. PMID 17704179 DOI: 10.1529/biophysj.107.112540  0.92
2007 Faraldo-Gómez JD, Kutluay E, Jogini V, Zhao Y, Heginbotham L, Roux B. Mechanism of intracellular block of the KcsA K+ channel by tetrabutylammonium: insights from X-ray crystallography, electrophysiology and replica-exchange molecular dynamics simulations. Journal of Molecular Biology. 365: 649-62. PMID 17070844 DOI: 10.1016/j.jmb.2006.09.069  0.92
2007 Jogini V, Roux B. Corrigendum to "Electrostatics of the Intracellular Vestibule of K+ Channels" [J. Mol. Biol. 354 (2006) 272-288] (DOI:10.1016/j.jmb.2005.09.031) Journal of Molecular Biology. 373: 1374. DOI: 10.1016/j.jmb.2005.09.102  0.92
2006 Cordero-Morales JF, Cuello LG, Zhao Y, Jogini V, Cortes DM, Roux B, Perozo E. Molecular determinants of gating at the potassium-channel selectivity filter. Nature Structural & Molecular Biology. 13: 311-8. PMID 16532009 DOI: 10.1038/nsmb1069  0.92
2005 Jogini V, Roux B. Electrostatics of the intracellular vestibule of K+ channels. Journal of Molecular Biology. 354: 272-88. PMID 16242718 DOI: 10.1016/j.jmb.2005.09.031  0.92
2004 Candi E, Paradisi A, Terrinoni A, Pietroni V, Oddi S, Cadot B, Jogini V, Meiyappan M, Clardy J, Finazzi-Agro A, Melino G. Transglutaminase 5 is regulated by guanine-adenine nucleotides. The Biochemical Journal. 381: 313-9. PMID 15038793 DOI: 10.1042/BJ20031474  0.92
2004 Mathur A, Sethi A, Jogini V, Bhargava Y, Tembe BL, Lala AK. Energetics of insertion of soluble proteins into membrane Current Science. 87: 181-189.  0.92
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