| Year |
Citation |
Score |
| 2020 |
Funk LC, Wan J, Ryan SD, Kaur C, Sullivan R, Roopra A, Weaver BA. p53 is not required for cell death and tumor suppression caused by high chromosomal instability. Molecular Cancer Research : McR. PMID 32948674 DOI: 10.1158/1541-7786.Mcr-20-0488 |
0.394 |
|
| 2020 |
Damaschke NA, Gawdzik J, Avilla M, Yang B, Svaren J, Roopra A, Luo JH, Yu YP, Keles S, Jarrard DF. CTCF loss mediates unique DNA hypermethylation landscapes in human cancers. Clinical Epigenetics. 12: 80. PMID 32503656 DOI: 10.1186/S13148-020-00869-7 |
0.324 |
|
| 2020 |
Roopra A. MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data. Plos Computational Biology. 16: e1007800. PMID 32251445 DOI: 10.1371/Journal.Pcbi.1007800 |
0.389 |
|
| 2019 |
Khan N, Schoenike B, Basu T, Grabenstatter H, Rodriguez G, Sindic C, Johnson M, Wallace E, Maganti R, Dingledine R, Roopra A. A systems approach identifies Enhancer of Zeste Homolog 2 (EZH2) as a protective factor in epilepsy. Plos One. 14: e0226733. PMID 31891591 DOI: 10.1371/Journal.Pone.0226733 |
0.554 |
|
| 2019 |
Gawdzik J, Yang* B, Machhi R, Roopra A, Khemees T, Jarrard D. MP68-08 A ‘BROKEN CTCF’ GENE SIGNATURE, A MASTER EPIGENETIC REGULATOR, PREDICTS ADVERSE CANCER OUTCOME AND ALTERED AMINO ACID TRANSPORT IN PROSTATE CANCER. Journal of Urology. 201. DOI: 10.1097/01.Ju.0000557023.64212.7C |
0.334 |
|
| 2017 |
Spurgeon ME, den Boon JA, Horswill M, Barthakur S, Forouzan O, Rader JS, Beebe DJ, Roopra A, Ahlquist P, Lambert PF. Human papillomavirus oncogenes reprogram the cervical cancer microenvironment independently of and synergistically with estrogen. Proceedings of the National Academy of Sciences of the United States of America. 114: E9076-E9085. PMID 29073104 DOI: 10.1073/Pnas.1712018114 |
0.322 |
|
| 2017 |
Dingledine R, Coulter DA, Fritsch B, Gorter JA, Lelutiu N, McNamara J, Nadler JV, Pitkänen A, Rogawski MA, Skene P, Sloviter RS, Wang Y, Wadman WJ, Wasterlain C, Roopra A. Transcriptional profile of hippocampal dentate granule cells in four rat epilepsy models. Scientific Data. 4: 170061. PMID 28485718 DOI: 10.1038/Sdata.2017.61 |
0.548 |
|
| 2016 |
Galanopoulou AS, Wong M, Binder D, Hartman AL, Powell EM, Roopra A, Staba R, Vezzani A, Fureman B, Dingledine R. 2014 Epilepsy Benchmarks Area II: Prevent Epilepsy and Its Progression. Epilepsy Currents / American Epilepsy Society. 16: 187-91. PMID 27330451 DOI: 10.5698/1535-7511-16.3.187 |
0.482 |
|
| 2016 |
Damaschke NA, Yang B, Montgomery A, Svaren J, Roopra A, Luo J, Keles S, Jarrard D. Abstract 4434: CTCF acts as a master regulator to direct epigenetic events important for tumor development and progression Cancer Research. 76: 4434-4434. DOI: 10.1158/1538-7445.Am2016-4434 |
0.419 |
|
| 2015 |
Meyer K, Albaugh B, Schoenike B, Roopra A. IGF1R/IRS1 signaling confers pathogenic activity on breast tumor cells lacking REST. Molecular and Cellular Biology. PMID 26100015 DOI: 10.1128/Mcb.01149-14 |
0.549 |
|
| 2015 |
Fakhraldeen SA, Clark RJ, Roopra A, Chin EN, Huang W, Castorino J, Wisinski KB, Kim T, Spiegelman VS, Alexander CM. Two Isoforms of the RNA Binding Protein, Coding Region Determinant-binding Protein (CRD-BP/IGF2BP1), Are Expressed in Breast Epithelium and Support Clonogenic Growth of Breast Tumor Cells. The Journal of Biological Chemistry. 290: 13386-400. PMID 25861986 DOI: 10.1074/Jbc.M115.655175 |
0.526 |
|
| 2013 |
Elgamal OA, Park JK, Gusev Y, Azevedo-Pouly AC, Jiang J, Roopra A, Schmittgen TD. Tumor suppressive function of mir-205 in breast cancer is linked to HMGB3 regulation. Plos One. 8: e76402. PMID 24098490 DOI: 10.1371/Journal.Pone.0076402 |
0.441 |
|
| 2013 |
Elgamal OA, Park J, Gusev Y, Azevedo-Pouly ACP, Jiang J, Roopra A, Schmittgen TD. Knockdown of HMGB3 reduces the proliferation and in vitro invasion of breast cancer cells. Plos One. DOI: 10.1371/Journal.Pone.0076402.G004 |
0.498 |
|
| 2013 |
Elgamal OA, Park J, Gusev Y, Azevedo-Pouly ACP, Jiang J, Roopra A, Schmittgen TD. HMGB3 is a target of miR-205 in breast cancer. Plos One. DOI: 10.1371/Journal.Pone.0076402.G003 |
0.406 |
|
| 2013 |
Elgamal OA, Park J, Gusev Y, Azevedo-Pouly ACP, Jiang J, Roopra A, Schmittgen TD. miR-205 is down-regulated in breast cancer. Plos One. DOI: 10.1371/Journal.Pone.0076402.G001 |
0.416 |
|
| 2012 |
Wagoner MP, Roopra A. A REST derived gene signature stratifies glioblastomas into chemotherapy resistant and responsive disease. Bmc Genomics. 13: 686. PMID 23216891 DOI: 10.1186/1471-2164-13-686 |
0.704 |
|
| 2012 |
Roopra A, Dingledine R, Hsieh J. Epigenetics and epilepsy. Epilepsia. 53: 2-10. PMID 23216574 DOI: 10.1111/Epi.12030 |
0.571 |
|
| 2012 |
Ryan SD, Britigan EM, Zasadil LM, Witte K, Audhya A, Roopra A, Weaver BA. Up-regulation of the mitotic checkpoint component Mad1 causes chromosomal instability and resistance to microtubule poisons. Proceedings of the National Academy of Sciences of the United States of America. 109: E2205-14. PMID 22778409 DOI: 10.1073/Pnas.1201911109 |
0.39 |
|
| 2012 |
Gunsalus KT, Wagoner MP, Meyer K, Potter WB, Schoenike B, Kim S, Alexander CM, Friedl A, Roopra A. Induction of the RNA regulator LIN28A is required for the growth and pathogenesis of RESTless breast tumors. Cancer Research. 72: 3207-16. PMID 22532168 DOI: 10.1158/0008-5472.Can-11-1639 |
0.735 |
|
| 2012 |
Kim S, Roopra A, Alexander CM. A phenotypic mouse model of basaloid breast tumors. Plos One. 7: e30979. PMID 22347416 DOI: 10.1371/Journal.Pone.0030979 |
0.481 |
|
| 2012 |
Gunsalus KTW, Wagoner MP, Meyer KM, Potter WB, Kim S, Schoenike B, Alexander CM, Freidl A, Roopra A. Abstract LB-271: Loss of the transcription factor REST promotes breast cancer tumorigenicity in a LIN28-dependent manner Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Lb-271 |
0.771 |
|
| 2010 |
Wagoner MP, Gunsalus KT, Schoenike B, Richardson AL, Friedl A, Roopra A. The transcription factor REST is lost in aggressive breast cancer. Plos Genetics. 6: e1000979. PMID 20548947 DOI: 10.1371/Journal.Pgen.1000979 |
0.746 |
|
| 2010 |
Potter WB, O'Riordan KJ, Barnett D, Osting SM, Wagoner M, Burger C, Roopra A. Metabolic regulation of neuronal plasticity by the energy sensor AMPK. Plos One. 5: e8996. PMID 20126541 DOI: 10.1371/Journal.Pone.0008996 |
0.646 |
|
| 2010 |
Gunsalus KTW, Wagoner MP, Potter WB, Schoenike B, Roopra A. Abstract 5020: Role of LIN28 in aggressive breast cancers lacking REST Cancer Research. 70: 5020-5020. DOI: 10.1158/1538-7445.Am10-5020 |
0.788 |
|
| 2010 |
Wagoner MP, Gunsalus KT, Schoenike B, Dang C, Alexander CM, Richardson AL, Friedl A, Roopra A. Abstract 5012: REST is lost in aggressive breast cancer through an aberrant splicing loop Cellular and Molecular Biology. 70: 5012-5012. DOI: 10.1158/1538-7445.Am10-5012 |
0.711 |
|
| 2006 |
Garriga-Canut M, Schoenike B, Qazi R, Bergendahl K, Daley TJ, Pfender RM, Morrison JF, Ockuly J, Stafstrom C, Sutula T, Roopra A. 2-Deoxy-D-glucose reduces epilepsy progression by NRSF-CtBP-dependent metabolic regulation of chromatin structure. Nature Neuroscience. 9: 1382-7. PMID 17041593 DOI: 10.1038/Nn1791 |
0.552 |
|
| 2004 |
Roopra A, Qazi R, Schoenike B, Daley TJ, Morrison JF. Localized domains of G9a-mediated histone methylation are required for silencing of neuronal genes. Molecular Cell. 14: 727-38. PMID 15200951 DOI: 10.1016/J.Molcel.2004.05.026 |
0.543 |
|
| 2001 |
Roopra A, Huang Y, Dingledine R. Neurological disease: listening to gene silencers. Molecular Interventions. 1: 219-28. PMID 14993344 |
0.508 |
|
| 2001 |
Garriga-Canut M, Roopra A, Buckley NJ. The basic helix-loop-helix protein, sharp-1, represses transcription by a histone deacetylase-dependent and histone deacetylase-independent mechanism. The Journal of Biological Chemistry. 276: 14821-8. PMID 11278948 DOI: 10.1074/Jbc.M011619200 |
0.343 |
|
| 2000 |
Roopra A, Sharling L, Wood IC, Briggs T, Bachfischer U, Paquette AJ, Buckley NJ. Transcriptional repression by neuron-restrictive silencer factor is mediated via the Sin3-histone deacetylase complex. Molecular and Cellular Biology. 20: 2147-57. PMID 10688661 DOI: 10.1128/Mcb.20.6.2147-2157.2000 |
0.341 |
|
| 1999 |
Buckley NJ, Bachfischer U, Canut M, Mistry M, Pepitoni S, Roopra A, Sharling L, Wood IC. Repression and activation of muscarinic receptor genes. Life Sciences. 64: 495-9. PMID 10069515 DOI: 10.1016/S0024-3205(98)00593-1 |
0.307 |
|
| 1999 |
Wood IC, Mistry M, Roopra A, Buckley NJ. The role of REST/NRSF in regulating endogenous gene expression Biochemical Society Transactions. 27. DOI: 10.1042/Bst027A125B |
0.347 |
|
| 1996 |
Wood IC, Roopra A, Buckley NJ. Neural specific expression of the m4 muscarinic acetylcholine receptor gene is mediated by a RE1/NRSE-type silencing element. The Journal of Biological Chemistry. 271: 14221-5. PMID 8662964 DOI: 10.1074/Jbc.271.24.14221 |
0.314 |
|
| 1995 |
Wood IC, Roopra A, Harrington C, Buckley NJ. Structure of the m4 cholinergic muscarinic receptor gene and its promoter. The Journal of Biological Chemistry. 270: 30933-40. PMID 8537349 DOI: 10.1074/Jbc.270.52.30933 |
0.301 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2006 |
Jang SW, LeBlanc SE, Roopra A, Wrabetz L, Svaren J. In vivo detection of Egr2 binding to target genes during peripheral nerve myelination. Journal of Neurochemistry. 98: 1678-87. PMID 16923174 DOI: 10.1111/J.1471-4159.2006.04069.X |
0.293 |
|
| 2008 |
Stafstrom CE, Roopra A, Sutula TP. Seizure suppression via glycolysis inhibition with 2-deoxy-D-glucose (2DG). Epilepsia. 49: 97-100. PMID 19049601 DOI: 10.1111/J.1528-1167.2008.01848.X |
0.289 |
|
| 2019 |
Basu T, O'Riordan KJ, Schoenike BA, Khan NN, Wallace EP, Rodriguez G, Maganti RK, Roopra A. Histone deacetylase inhibitors restore normal hippocampal synaptic plasticity and seizure threshold in a mouse model of Tuberous Sclerosis Complex. Scientific Reports. 9: 5266. PMID 30918308 DOI: 10.1038/S41598-019-41744-7 |
0.285 |
|
| 2018 |
Wallace E, Wright S, Schoenike B, Roopra A, Rho JM, Maganti RK. Altered circadian rhythms and oscillation of clock genes and sirtuin 1 in a model of sudden unexpected death in epilepsy. Epilepsia. PMID 30009381 DOI: 10.1111/Epi.14513 |
0.275 |
|
| 2009 |
Stafstrom CE, Ockuly JC, Murphree L, Valley MT, Roopra A, Sutula TP. Anticonvulsant and antiepileptic actions of 2-deoxy-D-glucose in epilepsy models. Annals of Neurology. 65: 435-47. PMID 19399874 DOI: 10.1002/Ana.21603 |
0.273 |
|
| 2013 |
Potter WB, Basu T, O'Riordan KJ, Kirchner A, Rutecki P, Burger C, Roopra A. Reduced juvenile long-term depression in tuberous sclerosis complex is mitigated in adults by compensatory recruitment of mGluR5 and Erk signaling. Plos Biology. 11: e1001627. PMID 23966835 DOI: 10.1371/Journal.Pbio.1001627 |
0.268 |
|
| 2013 |
Pandi G, Nakka VP, Dharap A, Roopra A, Vemuganti R. MicroRNA miR-29c down-regulation leading to de-repression of its target DNA methyltransferase 3a promotes ischemic brain damage. Plos One. 8: e58039. PMID 23516428 DOI: 10.1371/Journal.Pone.0058039 |
0.264 |
|
| 2019 |
Ruhl DA, Bomba-Warczak E, Watson ET, Bradberry MM, Peterson TA, Basu T, Frelka A, Evans CS, Briguglio JS, Basta T, Stowell MHB, Savas JN, Roopra A, Pearce RA, Piper RC, et al. Synaptotagmin 17 controls neurite outgrowth and synaptic physiology via distinct cellular pathways. Nature Communications. 10: 3532. PMID 31387992 DOI: 10.1038/S41467-019-11459-4 |
0.249 |
|
| 2013 |
Elgamal OA, Park J, Gusev Y, Azevedo-Pouly ACP, Jiang J, Roopra A, Schmittgen TD. Expression of miR-205 and HMGB3 are altered in 5-Aza and TSA treated cells. Plos One. DOI: 10.1371/Journal.Pone.0076402.G006 |
0.246 |
|
| 2014 |
Kasza I, Suh Y, Wollny D, Clark RJ, Roopra A, Colman RJ, MacDougald OA, Shedd TA, Nelson DW, Yen MI, Yen CL, Alexander CM. Syndecan-1 is required to maintain intradermal fat and prevent cold stress. Plos Genetics. 10: e1004514. PMID 25101993 DOI: 10.1371/Journal.Pgen.1004514 |
0.241 |
|
| 2012 |
Squirrell JM, Fong JJ, Ariza CA, Mael A, Meyer K, Shevde NK, Roopra A, Lyons GE, Kamp TJ, Eliceiri KW, Ogle BM. Endogenous fluorescence signatures in living pluripotent stem cells change with loss of potency. Plos One. 7: e43708. PMID 22952742 DOI: 10.1371/Journal.Pone.0043708 |
0.229 |
|
| 2003 |
Wood IC, Belyaev ND, Bruce AW, Jones C, Mistry M, Roopra A, Buckley NJ. Interaction of the repressor element 1-silencing transcription factor (REST) with target genes. Journal of Molecular Biology. 334: 863-74. PMID 14643653 DOI: 10.1016/j.jmb.2003.10.017 |
0.217 |
|
| 2021 |
Yang GH, Fontaine DA, Lodh S, Blumer JT, Roopra A, Davis DB. TCF19 Impacts a Network of Inflammatory and DNA Damage Response Genes in the Pancreatic β-Cell. Metabolites. 11. PMID 34436454 DOI: 10.3390/metabo11080513 |
0.19 |
|
| 2023 |
Hoffman OR, Patterson AM, Gohar ES, Coleman E, Schoenike BA, Espinosa-Garcia C, Paredes F, Dingledine RJ, Maguire JL, Roopra AS. Profound seizure suppression and disease modification by targeting JAK1, a key driver of a pro-epileptogenic gene network. Biorxiv : the Preprint Server For Biology. PMID 37662337 DOI: 10.1101/2023.08.07.552299 |
0.181 |
|
| 2015 |
Kimble J, Bement WM, Chang Q, Cox BL, Drinkwater NR, Gourse RL, Hoskins AA, Huttenlocher A, Kreeger PK, Lambert PF, Mailick MR, Miyamoto S, Moss RL, O'Connor-Giles KM, Roopra A, et al. Strategies from UW-Madison for rescuing biomedical research in the US. Elife. 4. PMID 26122792 DOI: 10.7554/Elife.09305 |
0.178 |
|
| 1996 |
Wood KV, Campbell AK, Rutter GA, White PJ, Squirrell DJ, Arnaud P, Lowe CR, Murrai JAB, Sala-Newby G, Ward A, Fisher R, Richardson L, Graham CF, White MRH, Roopra A, et al. Current Applications in Bioluminescence—21 September 1995, University of Wales College of Medicine, Cardiff, UK Journal of Bioluminescence and Chemiluminescence. 11: 49-54. DOI: 10.1002/(Sici)1099-1271(199601)11:1<49::Aid-Bio403>3.0.Co;2-I |
0.166 |
|
| 2023 |
Chang HY, Huynh M, Roopra AS, Callander NS, Miyamoto S. HAPLN1 matrikine: A bone marrow homing factor linked to poor MM patient outcomes. Blood Advances. PMID 37647592 DOI: 10.1182/bloodadvances.2023010139 |
0.161 |
|
| 2020 |
Kiernan EA, Ewald AC, Ouellette JN, Wang T, Agbeh A, Knutson AO, Roopra AS, Watters JJ. Prior Hypoxia Exposure Enhances Murine Microglial Inflammatory Gene Expression Without Concomitant H3K4me3 Enrichment. Frontiers in Cellular Neuroscience. 14: 535549. PMID 33132843 DOI: 10.3389/fncel.2020.535549 |
0.14 |
|
| 2022 |
Fakhraldeen SA, Berry SM, Beebe DJ, Roopra A, Bisbach CM, Spiegelman VS, Niemi NM, Alexander CM. Enhanced immunoprecipitation techniques for the identification of RNA binding protein partners: IGF2BP1 interactions in mammary epithelial cells. The Journal of Biological Chemistry. 101649. PMID 35104504 DOI: 10.1016/j.jbc.2022.101649 |
0.135 |
|
| 2024 |
Morrow CS, Tweed K, Farhadova S, Walsh AJ, Lear BP, Roopra A, Risgaard RD, Klosa PC, Arndt ZP, Peterson ER, Chi MM, Harris AG, Skala MC, Moore DL. Autofluorescence is a biomarker of neural stem cell activation state. Cell Stem Cell. PMID 38521057 DOI: 10.1016/j.stem.2024.02.011 |
0.132 |
|
| 2020 |
Ewald AC, Kiernan EA, Roopra AS, Radcliff AB, Timko RR, Baker TL, Watters JJ. Sex- and region-specific differences in the transcriptomes of rat microglia from the brainstem and cervical spinal cord. The Journal of Pharmacology and Experimental Therapeutics. PMID 32661056 DOI: 10.1124/Jpet.120.266171 |
0.13 |
|
| 2019 |
Miller KN, Clark JP, Martin SA, Howell PR, Burhans MS, Haws SA, Johnson NB, Rhoads TW, Pavelec DM, Eliceiri KW, Roopra AS, Ntambi JM, Denu JM, Parks BW, Anderson RM. PGC-1a integrates a metabolism and growth network linked to caloric restriction. Aging Cell. e12999. PMID 31267675 DOI: 10.1111/Acel.12999 |
0.125 |
|
| 2022 |
Britigan EMC, Wan J, Sam DK, Copeland SE, Lasek AL, Hrycyniak LCF, Wang L, Audhya A, Burkard ME, Roopra A, Weaver BA. Increased Aurora B expression reduces substrate phosphorylation and induces chromosomal instability. Frontiers in Cell and Developmental Biology. 10: 1018161. PMID 36313574 DOI: 10.3389/fcell.2022.1018161 |
0.11 |
|
| 2022 |
Miller S, Abrahante JE, Roopra A, Dougherty BJ. A transcriptome dataset for gonadectomy-induced changes in rat spinal cord. Scientific Data. 9: 789. PMID 36581616 DOI: 10.1038/s41597-022-01917-y |
0.049 |
|
| 1995 |
Vaudin M, Roopra A, Hillier L, Brinkman R, Sulston J, Wilson RK, Waterston RH. The construction and analysis of M13 libraries prepared from YAC DNA. Nucleic Acids Research. 23: 670-4. PMID 7899089 DOI: 10.1093/Nar/23.4.670 |
0.03 |
|
| 1990 |
Green A, Roopra A, Vaudin M. Direct single stranded sequencing from agarose of polymerase chain reaction products. Nucleic Acids Research. 18: 6163-4. PMID 2235520 |
0.014 |
|
| Hide low-probability matches. |