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Tae-Kyung Kim - Publications

Affiliations: 
University of Texas Southwestern Medical Center, Dallas, TX, United States 
Area:
Activity-regulated genetic program
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Taniguchi M, Carreira MB, Cooper YA, Bobadilla AC, Heinsbroek JA, Koike N, Larson EB, Balmuth EA, Hughes BW, Penrod RD, Kumar J, Smith LN, Guzman D, Takahashi JS, Kim TK, et al. HDAC5 and Its Target Gene, Npas4, Function in the Nucleus Accumbens to Regulate Cocaine-Conditioned Behaviors. Neuron. 96: 130-144.e6. PMID 28957664 DOI: 10.1016/j.neuron.2017.09.015  0.64
2017 Schaukowitch K, Joo JY, Kim TK. UV-RNA Immunoprecipitation (UV-RIP) Protocol in Neurons. Methods in Molecular Biology (Clifton, N.J.). 1468: 33-8. PMID 27662868 DOI: 10.1007/978-1-4939-4035-6_4  0.76
2016 Kim TK, Shiekhattar R. Diverse regulatory interactions of long noncoding RNAs. Current Opinion in Genetics & Development. 36: 73-82. PMID 27151434 DOI: 10.1016/j.gde.2016.03.014  0.76
2015 Joo JY, Schaukowitch K, Farbiak L, Kilaru G, Kim TK. Stimulus-specific combinatorial functionality of neuronal c-fos enhancers. Nature Neuroscience. PMID 26595656 DOI: 10.1038/nn.4170  0.76
2015 Gray JM, Kim TK, West AE, Nord AS, Markenscoff-Papadimitriou E, Lomvardas S. Genomic Views of Transcriptional Enhancers: Essential Determinants of Cellular Identity and Activity-Dependent Responses in the CNS. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 13819-26. PMID 26468181 DOI: 10.1523/JNEUROSCI.2622-15.2015  0.76
2015 Kim TK, Shiekhattar R. Architectural and Functional Commonalities between Enhancers and Promoters. Cell. 162: 948-59. PMID 26317464 DOI: 10.1016/j.cell.2015.08.008  0.76
2015 Takahashi JS, Kumar V, Nakashe P, Koike N, Huang HC, Green CB, Kim TK. ChIP-seq and RNA-seq methods to study circadian control of transcription in mammals. Methods in Enzymology. 551: 285-321. PMID 25662462 DOI: 10.1016/bs.mie.2014.10.059  0.76
2015 Kim TK, Hemberg M, Gray JM. Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Cold Spring Harbor Perspectives in Biology. 7: a018622. PMID 25561718 DOI: 10.1101/cshperspect.a018622  0.76
2014 Kim SK, Lee H, Han K, Kim SC, Choi Y, Park SW, Bak G, Lee Y, Choi JK, Kim TK, Han YM, Lee D. SET7/9 methylation of the pluripotency factor LIN28A is a nucleolar localization mechanism that blocks let-7 biogenesis in human ESCs. Cell Stem Cell. 15: 735-49. PMID 25479749 DOI: 10.1016/j.stem.2014.10.016  0.76
2014 Schaukowitch K, Joo JY, Liu X, Watts JK, Martinez C, Kim TK. Enhancer RNA facilitates NELF release from immediate early genes. Molecular Cell. 56: 29-42. PMID 25263592 DOI: 10.1016/j.molcel.2014.08.023  0.76
2013 Shimomura K, Kumar V, Koike N, Kim TK, Chong J, Buhr ED, Whiteley AR, Low SS, Omura C, Fenner D, Owens JR, Richards M, Yoo SH, Hong HK, Vitaterna MH, et al. Usf1, a suppressor of the circadian Clock mutant, reveals the nature of the DNA-binding of the CLOCK:BMAL1 complex in mice. Elife. 2: e00426. PMID 23580255 DOI: 10.7554/eLife.00426  0.76
2012 Koike N, Yoo SH, Huang HC, Kumar V, Lee C, Kim TK, Takahashi JS. Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science (New York, N.Y.). 338: 349-54. PMID 22936566 DOI: 10.1126/science.1226339  0.76
2012 Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, et al. Systematic evaluation of factors influencing ChIP-seq fidelity. Nature Methods. 9: 609-14. PMID 22522655 DOI: 10.1038/nmeth.1985  0.76
2012 Ross SE, McCord AE, Jung C, Atan D, Mok SI, Hemberg M, Kim TK, Salogiannis J, Hu L, Cohen S, Lin Y, Harrar D, McInnes RR, Greenberg ME. Bhlhb5 and Prdm8 form a repressor complex involved in neuronal circuit assembly. Neuron. 73: 292-303. PMID 22284184 DOI: 10.1016/j.neuron.2011.09.035  0.76
2010 Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE. Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. Plos One. 5: e10870. PMID 20523734 DOI: 10.1371/journal.pone.0010870  0.76
2010 Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, et al. Widespread transcription at neuronal activity-regulated enhancers. Nature. 465: 182-7. PMID 20393465 DOI: 10.1038/nature09033  0.76
2010 Greer PL, Hanayama R, Bloodgood BL, Mardinly AR, Lipton DM, Flavell SW, Kim TK, Griffith EC, Waldon Z, Maehr R, Ploegh HL, Chowdhury S, Worley PF, Steen J, Greenberg ME. The Angelman Syndrome protein Ube3A regulates synapse development by ubiquitinating arc. Cell. 140: 704-16. PMID 20211139 DOI: 10.1016/j.cell.2010.01.026  0.76
2009 Fiore R, Khudayberdiev S, Christensen M, Siegel G, Flavell SW, Kim TK, Greenberg ME, Schratt G. Mef2-mediated transcription of the miR379-410 cluster regulates activity-dependent dendritogenesis by fine-tuning Pumilio2 protein levels. The Embo Journal. 28: 697-710. PMID 19197241 DOI: 10.1038/emboj.2009.10  0.76
2008 Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, Hong EJ, Markenscoff-Papadimitriou E, Bear DM, Greenberg ME. Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron. 60: 1022-38. PMID 19109909 DOI: 10.1016/j.neuron.2008.11.029  0.76
2008 Lin Y, Bloodgood BL, Hauser JL, Lapan AD, Koon AC, Kim TK, Hu LS, Malik AN, Greenberg ME. Activity-dependent regulation of inhibitory synapse development by Npas4. Nature. 455: 1198-204. PMID 18815592 DOI: 10.1038/nature07319  0.76
2008 Morrow EM, Yoo SY, Flavell SW, Kim TK, Lin Y, Hill RS, Mukaddes NM, Balkhy S, Gascon G, Hashmi A, Al-Saad S, Ware J, Joseph RM, Greenblatt R, Gleason D, et al. Identifying autism loci and genes by tracing recent shared ancestry. Science (New York, N.Y.). 321: 218-23. PMID 18621663 DOI: 10.1126/science.1157657  0.76
2007 Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature. 448: 553-60. PMID 17603471 DOI: 10.1038/nature06008  0.76
2006 Marinescu VD, Kohane IS, Kim TK, Harmin DA, Greenberg ME, Riva A. START: an automated tool for serial analysis of chromatin occupancy data. Bioinformatics (Oxford, England). 22: 999-1001. PMID 16500934 DOI: 10.1093/bioinformatics/btl062  0.76
2006 Flavell SW, Cowan CW, Kim TK, Greer PL, Lin Y, Paradis S, Griffith EC, Hu LS, Chen C, Greenberg ME. Activity-dependent regulation of MEF2 transcription factors suppresses excitatory synapse number. Science (New York, N.Y.). 311: 1008-12. PMID 16484497 DOI: 10.1126/science.1122511  0.76
2005 Pavri R, Lewis B, Kim TK, Dilworth FJ, Erdjument-Bromage H, Tempst P, de Murcia G, Evans R, Chambon P, Reinberg D. PARP-1 determines specificity in a retinoid signaling pathway via direct modulation of mediator. Molecular Cell. 18: 83-96. PMID 15808511 DOI: 10.1016/j.molcel.2005.02.034  0.76
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