Claes Wahlestedt - Related publications

Affiliations: 
Neuroscience Scripps Florida, Jupiter, FL, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Chen HQ, Chen DJ, Li Y, Han F, Jiang X, Cao J, Liu JY, Liu WB. DNA methylation and hydroxymethylation associated with gene expression regulatory network during 3-methylcholanthrene induced lung cell malignant transformation. The Science of the Total Environment. 771: 144839. PMID 33545462 DOI: 10.1016/j.scitotenv.2020.144839   
2021 Martín L, Kamstra JH, Hurem S, Lindeman LC, Brede DA, Aanes H, Babiak I, Arenal A, Oughton D, Salbu B, Lyche JL, Aleström P. Altered non-coding RNA expression profile in F progeny 1 year after parental irradiation is linked to adverse effects in zebrafish. Scientific Reports. 11: 4142. PMID 33602989 DOI: 10.1038/s41598-021-83345-3   
2021 Jankowski J, Lee HK, Wilflingseder J, Hennighausen L. Interferon-regulated genetic programs and JAK/STAT pathway activate the intronic promoter of the short ACE2 isoform in renal proximal tubules. Biorxiv : the Preprint Server For Biology. PMID 33501441 DOI: 10.1101/2021.01.15.426908   
2021 Helbling JC, Kinouchi K, Trifilieff P, Sassone-Corsi P, Moisan MP. Combined Gene Expression and Chromatin Immunoprecipitation From a Single Mouse Hippocampus. Current Protocols. 1: e33. PMID 33566459 DOI: 10.1002/cpz1.33   
2021 Pérez-Pulido AJ, Asencio-Cortés G, Brokate-Llanos AM, Brea-Calvo G, Rodríguez-Griñolo R, Garzón A, Muñoz MJ. Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators. Briefings in Bioinformatics. PMID 33458747 DOI: 10.1093/bib/bbaa419   
2021 Browne JA, NandyMazumdar M, Paranjapye A, Leir SH, Harris A. The Bromodomain Containing 8 (BRD8) Transcriptional Network in Human Lung Epithelial Cells. Molecular and Cellular Endocrinology. 111169. PMID 33476703 DOI: 10.1016/j.mce.2021.111169   
2021 Cui W, Xue H, Wei L, Jin J, Tian X, Wang Q. High heterogeneity undermines generalization of differential expression results in RNA-Seq analysis. Human Genomics. 15: 7. PMID 33509298 DOI: 10.1186/s40246-021-00308-5   
2021 Johnson M, Mowa CN. Transcriptomic profile of VEGF-regulated genes in human cervical epithelia. Cell and Tissue Research. PMID 33511468 DOI: 10.1007/s00441-020-03354-y   
2021 Nylund P, Atienza Párraga A, Haglöf J, De Bruyne E, Menu E, Garrido-Zabala B, Ma A, Jin J, Öberg F, Vanderkerken K, Kalushkova A, Jernberg-Wiklund H. A distinct metabolic response characterizes sensitivity to EZH2 inhibition in multiple myeloma. Cell Death & Disease. 12: 167. PMID 33579905 DOI: 10.1038/s41419-021-03447-8   
2021 Marla S, Mortlock S, Houshdaran S, Fung J, McKinnon B, Holdsworth-Carson SJ, Girling JE, Rogers PAW, Giudice LC, Montgomery GW. Genetic risk factors for endometriosis near estrogen receptor 1 and co-expression of genes in this region in endometrium. Molecular Human Reproduction. PMID 33394050 DOI: 10.1093/molehr/gaaa082   
2021 Larke MSC, Schwessinger R, Nojima T, Telenius J, Beagrie RA, Downes DJ, Oudelaar AM, Truch J, Graham B, Bender MA, Proudfoot NJ, Higgs DR, Hughes JR. Enhancers predominantly regulate gene expression during differentiation via transcription initiation. Molecular Cell. PMID 33539786 DOI: 10.1016/j.molcel.2021.01.002   
2021 Zheng C, Yu S. Expression and gene regulatory network of SNHG1 in hepatocellular carcinoma. Bmc Medical Genomics. 14: 28. PMID 33499863 DOI: 10.1186/s12920-021-00878-2   
2021 Zheng C, Yu S. Expression and gene regulatory network of SNHG1 in hepatocellular carcinoma. Bmc Medical Genomics. 14: 28. PMID 33499863 DOI: 10.1186/s12920-021-00878-2   
2021 Nashiry A, Sarmin Sumi S, Islam S, Quinn JMW, Moni MA. Bioinformatics and system biology approach to identify the influences of COVID-19 on cardiovascular and hypertensive comorbidities. Briefings in Bioinformatics. PMID 33458761 DOI: 10.1093/bib/bbaa426   
2021 Gao N, Hu J, He B, Ji Z, Hu X, Huang J, Wei Y, Peng J, Wei Y, Zhou Y, Shen X, Li H, Feng X, Xiao Q, Shi L, et al. Endogenous promoter-driven sgRNA for monitoring the expression of low-abundance transcripts and lncRNAs. Nature Cell Biology. PMID 33398178 DOI: 10.1038/s41556-020-00610-9   
2021 Pensold D, Gehrmann J, Pitschelatow G, Walberg A, Braunsteffer K, Reichard J, Ravaei A, Linde J, Lampert A, Costa IG, Zimmer-Bensch G. The Expression of the Cancer-Associated lncRNA Is Modulated by EphrinA5-Induced Signaling. International Journal of Molecular Sciences. 22. PMID 33572758 DOI: 10.3390/ijms22031332   
2021 Marla S, Mortlock S, Houshdaran S, Fung J, McKinnon B, Holdsworth-Carson SJ, Girling JE, Rogers PAW, Giudice LC, Montgomery GW. Genetic risk factors for endometriosis near estrogen receptor 1 and coexpression of genes in this region in endometrium. Molecular Human Reproduction. 27. PMID 33508137 DOI: 10.1093/molehr/gaaa082   
2021 Marla S, Mortlock S, Houshdaran S, Fung J, McKinnon B, Holdsworth-Carson SJ, Girling JE, Rogers PAW, Giudice LC, Montgomery GW. Genetic risk factors for endometriosis near estrogen receptor 1 and coexpression of genes in this region in endometrium. Molecular Human Reproduction. 27. PMID 33543286 DOI: 10.1093/molehr/gaaa082   
2021 Lo LH, Lam CY, To JC, Chiu CH, Keng VW. Sleeping Beauty insertional mutagenesis screen identifies the pro-metastatic roles of CNPY2 and ACTN2 in hepatocellular carcinoma tumor progression. Biochemical and Biophysical Research Communications. 541: 70-77. PMID 33482578 DOI: 10.1016/j.bbrc.2021.01.017   
2021 Ning W, Huang M, Wu S, Wang H, Yao J, Ge Y, Tang Y, Sun K, Xie X, Hu Q. CT23 knockdown attenuating malignant behaviors of hepatocellular carcinoma cell is associated with up-regulation of metallothionein 1. Cell Biology International. PMID 33559934 DOI: 10.1002/cbin.11567   
2021 Yang Q, Lyu X, Zhao F, Liu Y. Effects of codon usage on gene expression are promoter context dependent. Nucleic Acids Research. PMID 33410890 DOI: 10.1093/nar/gkaa1253   
2021 Chen Y, Zhou C, Li H, Li H, Li Y. Identifying Key Genes for Nasopharyngeal Carcinoma by Prioritized Consensus Differentially Expressed Genes Caused by Aberrant Methylation. Journal of Cancer. 12: 874-884. PMID 33403044 DOI: 10.7150/jca.49392   
2021 Kanev K, Roelli P, Wu M, Wurmser C, Delorenzi M, Pfaffl MW, Zehn D. Tailoring the resolution of single-cell RNA sequencing for primary cytotoxic T cells. Nature Communications. 12: 569. PMID 33495472 DOI: 10.1038/s41467-020-20751-7   
2021 Hong Z, Wang Q, Hong C, Liu M, Qiu P, Lin R, Lin X, Chen F, Li Q, Liu L, Wang C, Chen D. Identification of Seven Cell Cycle-Related Genes with Unfavorable Prognosis and Construction of their TF-miRNA-mRNA regulatory network in Breast Cancer. Journal of Cancer. 12: 740-753. PMID 33403032 DOI: 10.7150/jca.48245   
2021 Gordon A, Yoon SJ, Tran SS, Makinson CD, Park JY, Andersen J, Valencia AM, Horvath S, Xiao X, Huguenard JR, Pașca SP, Geschwind DH. Long-term maturation of human cortical organoids matches key early postnatal transitions. Nature Neuroscience. PMID 33619405 DOI: 10.1038/s41593-021-00802-y   
2021 Chen B, Sun D, Qin X, Gao XH. Screening and identification of potential biomarkers and therapeutic drugs in melanoma via integrated bioinformatics analysis. Investigational New Drugs. PMID 33501609 DOI: 10.1007/s10637-021-01072-y   
2021 Gacita AM, Fullenkamp DE, Ohiri J, Pottinger T, Puckelwartz MJ, Nobrega MA, McNally EM. Genetic Variation in Enhancers Modifies Cardiomyopathy Gene Expression and Progression. Circulation. PMID 33478249 DOI: 10.1161/CIRCULATIONAHA.120.050432   
2021 Pieplow A, Dastaw M, Sakuma T, Sakamoto N, Yamamoto T, Yajima M, Oulhen N, Wessel GM. CRISPR-Cas9 editing of non-coding genomic loci as a means of controlling gene expression in the sea urchin. Developmental Biology. PMID 33482173 DOI: 10.1016/j.ydbio.2021.01.003   
2021 Deutsch M, Günther A, Lerchundi R, Rose CR, Balfanz S, Baumann A. AAV-Mediated CRISPRi and RNAi Based Gene Silencing in Mouse Hippocampal Neurons. Cells. 10. PMID 33557342 DOI: 10.3390/cells10020324   
2021 Wisnieski F, Geraldis JC, Santos LC, Leal MF, Calcagno DQ, Gigek CO, Chen ES, Anauate AC, Artigiani R, Demachki S, Assumpção PP, Lourenço LG, Arasaki CH, Krainer J, Pabinger S, et al. Differential regulation of in gastric cancer by DNA methylation. Epigenetics. PMID 33491552 DOI: 10.1080/15592294.2021.1878724   
2021 Liu XT, Liu TT, Wu MY, Chen QX, Zhuang JX, Wang Q. Identifying (Gene ID: 2192) as a Potential Melanoma Biomarker for Melanoma based on an Analysis of microRNA Expression Profiles in the GEO and TCGA Databases. Genetic Testing and Molecular Biomarkers. 25: 68-78. PMID 33470885 DOI: 10.1089/gtmb.2020.0274   
2021 Lim YS, Lee DY, Kim HY, Ok Y, Hwang S, Moon Y, Yoon S. Descriptive and functional characterization of epidermal growth factor‑like domain 8 in mouse cortical thymic epithelial cells by integrated analysis of gene expression signatures and networks. International Journal of Molecular Medicine. 47. PMID 33448309 DOI: 10.3892/ijmm.2020.4837   
2021 Tzani I, Herrmann N, Carillo S, Spargo CA, Hagan R, Barron N, Bones J, Shannon Dilmore W, Clarke C. Tracing production instability in a clonally-derived CHO cell line using single cell transcriptomics. Biotechnology and Bioengineering. PMID 33586781 DOI: 10.1002/bit.27715   
2021 Chia M, Li C, Marques S, Pelechano V, Luscombe NM, van Werven FJ. High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts. Genome Biology. 22: 34. PMID 33446241 DOI: 10.1186/s13059-020-02245-3   
2021 Liang Q, Zhou Q, Li J, Chen Z, Zhang Z, Liu R, Huang H, Peng Z, Liu Y. Validation of novel hub genes and molecular mechanisms in acute lung injury using an integrative bioinformatics approach. Acta Biochimica Et Biophysica Sinica. PMID 33521809 DOI: 10.1093/abbs/gmab003   
2021 Bueno D, Pedrolli DB, Martins PMM, Bocchini DA, Moraes KCM, Facincani AP, Ferro JA, Varani AM, Pena MM, Ferreira H. Riboswitch theo/ as a Transcription Regulation Tool for subsp. . Microorganisms. 9. PMID 33562149 DOI: 10.3390/microorganisms9020329   
2021 Wang D, Wang X, Huang H, Wang H. Triclosan regulates alternative splicing events of nerve-related genes through RNA-binding protein CELF2 to induce zebrafish neurotoxicity. Journal of Hazardous Materials. 413: 125414. PMID 33621777 DOI: 10.1016/j.jhazmat.2021.125414   
2021 Yang S, Kam WR, Liu Y, Ding J, Li Y, Sullivan DA. Comparative influence of differentiation and proliferation on gene expression in human meibomian gland epithelial cells. Experimental Eye Research. 108452. PMID 33493473 DOI: 10.1016/j.exer.2021.108452   
2021 Liu CC, Shih TC, Pai TW, Hu CH, Tzou WS. Enhanced Over-Representation Analysis for the Differential Regulation of and α-Knockdown Approaches. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 33512268 DOI: 10.1089/cmb.2020.0556   
2021 Wei S, Chen Y, Huang L, Ma H, Qi L, Wang Q, Sun M, Zhang X, Sha Z. Analysis of lncRNA and mRNA expression profiles in peripheral blood leukocytes of the half-smooth tongue sole (Cynoglossus semilaevis) treated with chitosan oligosaccharide. Developmental and Comparative Immunology. 104043. PMID 33621610 DOI: 10.1016/j.dci.2021.104043   
2021 Zhao F, Zhou Z, Dang Y, Na H, Adam C, Lipzen A, Ng V, Grigoriev IV, Liu Y. Genome-wide role of codon usage on transcription and identification of potential regulators. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33526697 DOI: 10.1073/pnas.2022590118   
2021 Lee Z, Raabe M, Hu WS. Epigenomic features revealed by ATAC-seq impact transgene expression in CHO cells. Biotechnology and Bioengineering. PMID 33521928 DOI: 10.1002/bit.27701   
2021 Lee Z, Raabe M, Hu WS. Epigenomic features revealed by ATAC-seq impact transgene expression in CHO cells. Biotechnology and Bioengineering. PMID 33521928 DOI: 10.1002/bit.27701   
2021 Chandra S, Ehrlich KC, Lacey M, Baribault C, Ehrlich M. Epigenetics and expression of key genes associated with cardiac fibrosis: and . Epigenomics. PMID 33538177 DOI: 10.2217/epi-2020-0446   
2021 Jacobs A, Elmer KR. Alternative splicing and gene expression play contrasting roles in the parallel phenotypic evolution of a salmonid fish. Molecular Ecology. PMID 33502030 DOI: 10.1111/mec.15817   
2021 Hou Guo Z, Yan Sheng Jia Y, Ming Zeng Y, Fa Li Z, Sheng Lin J. Transcriptome analysis identifies the differentially expressed genes related to the stemness of limbal stem cells in mice. Gene. 145447. PMID 33482278 DOI: 10.1016/j.gene.2021.145447   
2021 Pan Z, Bajsa-Hirschel J, Vaughn JN, Rimando AM, Baerson SR, Duke SO. In vivo assembly of the sorgoleone biosynthetic pathway and its impact on agroinfiltrated leaves of Nicotiana benthamiana. The New Phytologist. PMID 33460457 DOI: 10.1111/nph.17213   
2021 Bryzghalov O, Makałowska I, Szcześniak MW. lncEvo: automated identification and conservation study of long noncoding RNAs. Bmc Bioinformatics. 22: 59. PMID 33563213 DOI: 10.1186/s12859-021-03991-2   
2021 Xing Y, Yang X, Chen H, Zhu S, Xu J, Chen Y, Zeng J, Chen F, Johnson MR, Jiang H, Wang WJ. Impact of storage conditions on peripheral leukocytes transcriptome. Molecular Biology Reports. PMID 33565022 DOI: 10.1007/s11033-021-06194-3   
2021 Faria J, Luzak V, Müller LSM, Brink BG, Hutchinson S, Glover L, Horn D, Siegel TN. Spatial integration of transcription and splicing in a dedicated compartment sustains monogenic antigen expression in African trypanosomes. Nature Microbiology. PMID 33432154 DOI: 10.1038/s41564-020-00833-4