Misha B. Ahrens - Publications

Affiliations: 
HHMI Janelia Farm Research Campus, Ashburn, VA, United States 
Website:
http://www.janelia.org/lab/ahrens-lab

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nanda A, Johnson GW, Mu Y, Ahrens MB, Chang C, Englot DJ, Breakspear M, Rubinov M. Time-resolved correlation of distributed brain activity tracks E-I balance and accounts for diverse scale-free phenomena. Cell Reports. 42: 112254. PMID 36966391 DOI: 10.1016/j.celrep.2023.112254  0.569
2023 Zhang Y, Rózsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJ, Tsang A, Tsegaye G, Narayan S, Obara CJ, Lim JX, Patel R, Zhang R, ... Ahrens MB, et al. Fast and sensitive GCaMP calcium indicators for imaging neural populations. Nature. PMID 36922596 DOI: 10.1038/s41586-023-05828-9  0.78
2022 Koh TH, Bishop WE, Kawashima T, Jeon BB, Srinivasan R, Mu Y, Wei Z, Kuhlman SJ, Ahrens MB, Chase SM, Yu BM. Dimensionality reduction of calcium-imaged neuronal population activity. Nature Computational Science. 3: 71-85. PMID 37476302 DOI: 10.1038/s43588-022-00390-2  0.748
2022 Yang E, Zwart MF, James B, Rubinov M, Wei Z, Narayan S, Vladimirov N, Mensh BD, Fitzgerald JE, Ahrens MB. A brainstem integrator for self-location memory and positional homeostasis in zebrafish. Cell. 185: 5011-5027.e20. PMID 36563666 DOI: 10.1016/j.cell.2022.11.022  0.529
2022 Böhm UL, Kimura Y, Kawashima T, Ahrens MB, Higashijima SI, Engert F, Cohen AE. Voltage imaging identifies spinal circuits that modulate locomotor adaptation in zebrafish. Neuron. PMID 35104451 DOI: 10.1016/j.neuron.2022.01.001  0.726
2021 Kler S, Ma M, Narayan S, Ahrens MB, Pan YA. Cre-Dependent Anterograde Transsynaptic Labeling and Functional Imaging in Zebrafish Using VSV With Reduced Cytotoxicity. Frontiers in Neuroanatomy. 15: 758350. PMID 34720892 DOI: 10.3389/fnana.2021.758350  0.385
2020 Mu Y, Narayan S, Mensh BD, Ahrens MB. Brain-wide, scale-wide physiology underlying behavioral flexibility in zebrafish. Current Opinion in Neurobiology. 64: 151-160. PMID 33091825 DOI: 10.1016/j.conb.2020.08.013  0.596
2020 Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OT, Gritton HJ, Romano MF, Gao R, Yu CJ, Tseng HA, Bensussen S, Narayan S, Yang CT, Freifeld L, Siciliano CA, ... ... Ahrens MB, et al. Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron. PMID 32592656 DOI: 10.1016/J.Neuron.2020.05.029  0.4
2020 Zarowny L, Aggarwal A, Rutten VMS, Kolb I, Project TG, Patel R, Huang HY, Chang YF, Phan T, Kanyo R, Ahrens MB, Allison WT, Podgorski K, Campbell RE. A bright and high-performance genetically encoded Ca2+ indicator based on mNeonGreen fluorescent protein. Acs Sensors. PMID 32571014 DOI: 10.1021/Acssensors.0C00279  0.337
2019 Ahrens MB. Zebrafish Neuroscience: Using Artificial Neural Networks to Help Understand Brains. Current Biology : Cb. 29: R1138-R1140. PMID 31689401 DOI: 10.1016/J.Cub.2019.09.039  0.371
2019 Wee CL, Song EY, Johnson RE, Ailani D, Randlett O, Kim JY, Nikitchenko M, Bahl A, Yang CT, Ahrens MB, Kawakami K, Engert F, Kunes S. A bidirectional network for appetite control in larval zebrafish. Elife. 8. PMID 31625906 DOI: 10.7554/Elife.43775  0.74
2019 Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, ... ... Ahrens MB, et al. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science (New York, N.Y.). PMID 31371562 DOI: 10.1126/Science.Aav6416  0.569
2019 Marvin JS, Shimoda Y, Magloire V, Leite M, Kawashima T, Jensen TP, Kolb I, Knott EL, Novak O, Podgorski K, Leidenheimer NJ, Rusakov DA, Ahrens MB, Kullmann DM, Looger LL. A genetically encoded fluorescent sensor for in vivo imaging of GABA. Nature Methods. PMID 31308547 DOI: 10.1038/S41592-019-0471-2  0.436
2019 Mu Y, Bennett DV, Rubinov M, Narayan S, Yang CT, Tanimoto M, Mensh BD, Looger LL, Ahrens MB. Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior. Cell. PMID 31230713 DOI: 10.1016/J.Cell.2019.05.050  0.679
2019 Wee CL, Song EY, Johnson RE, Ailani D, Randlett O, Kim J, Nikitchenko M, Bahl A, Yang C, Ahrens MB, Kawakami K, Engert F, Kunes S. Author response: A bidirectional network for appetite control in larval zebrafish Elife. DOI: 10.7554/Elife.43775.042  0.756
2018 Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang CT, Wittenbach JD, Freeman J, Preibisch S, Koyama M, Keller PJ, Ahrens MB. Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15: 1117-1125. PMID 30504888 DOI: 10.1038/S41592-018-0221-X  0.716
2018 Chen X, Mu Y, Hu Y, Kuan AT, Nikitchenko M, Randlett O, Chen AB, Gavornik JP, Sompolinsky H, Engert F, Ahrens MB. Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish. Neuron. 100: 876-890.e5. PMID 30473013 DOI: 10.1016/J.Neuron.2018.09.042  0.784
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, ... ... Ahrens MB, et al. Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29520042 DOI: 10.1038/S41589-018-0023-6  0.636
2018 Vanwalleghem GC, Ahrens MB, Scott EK. Integrative whole-brain neuroscience in larval zebrafish. Current Opinion in Neurobiology. 50: 136-145. PMID 29486425 DOI: 10.1016/J.Conb.2018.02.004  0.468
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, ... ... Ahrens MB, et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29483642 DOI: 10.1038/S41589-018-0004-9  0.7
2017 Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L. Multi-scale approaches for high-speed imaging and analysis of large neural populations. Plos Computational Biology. 13: e1005685. PMID 28771570 DOI: 10.1371/Journal.Pcbi.1005685  0.647
2016 Kawashima T, Zwart MF, Yang CT, Mensh BD, Ahrens MB. The Serotonergic System Tracks the Outcomes of Actions to Mediate Short-Term Motor Learning. Cell. 167: 933-946.e20. PMID 27881303 DOI: 10.1016/J.Cell.2016.09.055  0.562
2016 Bennett DV, Ahrens MB. A Practical Guide to Light Sheet Microscopy. Methods in Molecular Biology (Clifton, N.J.). 1451: 321-31. PMID 27464818 DOI: 10.1007/978-1-4939-3771-4_22  0.32
2016 Williamson RS, Ahrens MB, Linden JF, Sahani M. Input-Specific Gain Modulation by Local Sensory Context Shapes Cortical and Thalamic Responses to Complex Sounds. Neuron. PMID 27346532 DOI: 10.1016/J.Neuron.2016.05.041  0.787
2016 Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D, Patel R, Macklin JJ, Bargmann CI, Ahrens MB, Schreiter ER, et al. Sensitive red protein calcium indicators for imaging neural activity. Elife. 5. PMID 27011354 DOI: 10.7554/Elife.12727  0.439
2016 Dunn TW, Mu Y, Narayan S, Randlett O, Naumann EA, Yang CT, Schier AF, Freeman J, Engert F, Ahrens MB. Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion. Elife. 5. PMID 27003593 DOI: 10.7554/Elife.12741  0.787
2016 Dunn TW, Gebhardt C, Naumann EA, Riegler C, Ahrens MB, Engert F, Del Bene F. Neural Circuits Underlying Visually Evoked Escapes in Larval Zebrafish. Neuron. PMID 26804997 DOI: 10.1016/J.Neuron.2015.12.021  0.794
2016 Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W, Ahrens M, Bruno R, Jessell TM, Peterka DS, Yuste R, et al. Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data. Neuron. PMID 26774160 DOI: 10.1016/J.Neuron.2015.11.037  0.671
2016 Dunn TW, Mu Y, Narayan S, Randlett O, Naumann EA, Yang C, Schier AF, Freeman J, Engert F, Ahrens MB. Author response: Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion Elife. DOI: 10.7554/Elife.12741.032  0.77
2016 Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D, Patel R, Macklin JJ, Bargmann CI, Ahrens MB, Schreiter ER, et al. Author response: Sensitive red protein calcium indicators for imaging neural activity Elife. DOI: 10.7554/Elife.12727.035  0.365
2015 Fosque BF, Sun Y, Dana H, Yang CT, Ohyama T, Tadross MR, Patel R, Zlatic M, Kim DS, Ahrens MB, Jayaraman V, Looger LL, Schreiter ER. Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators. Science (New York, N.Y.). 347: 755-60. PMID 25678659 DOI: 10.1126/Science.1260922  0.452
2015 Keller PJ, Ahrens MB. Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy. Neuron. 85: 462-83. PMID 25654253 DOI: 10.1016/J.Neuron.2014.12.039  0.441
2015 Ahrens MB, Engert F. Large-scale imaging in small brains. Current Opinion in Neurobiology. 32: 78-86. PMID 25636154 DOI: 10.1016/J.Conb.2015.01.007  0.724
2015 Keller PJ, Ahrens MB, Freeman J. Light-sheet imaging for systems neuroscience. Nature Methods. 12: 27-9. PMID 25549267 DOI: 10.1038/Nmeth.3214  0.389
2014 Freeman J, Vladimirov N, Kawashima T, Mu Y, Sofroniew NJ, Bennett DV, Rosen J, Yang CT, Looger LL, Ahrens MB. Mapping brain activity at scale with cluster computing. Nature Methods. 11: 941-50. PMID 25068736 DOI: 10.1038/Nmeth.3041  0.738
2014 Vladimirov N, Mu Y, Kawashima T, Bennett DV, Yang CT, Looger LL, Keller PJ, Freeman J, Ahrens MB. Light-sheet functional imaging in fictively behaving zebrafish. Nature Methods. 11: 883-4. PMID 25068735 DOI: 10.1038/Nmeth.3040  0.641
2013 Huang KH, Ahrens MB, Dunn TW, Engert F. Spinal projection neurons control turning behaviors in zebrafish. Current Biology : Cb. 23: 1566-73. PMID 23910662 DOI: 10.1016/J.Cub.2013.06.044  0.794
2013 Ahrens MB, Huang KH, Narayan S, Mensh BD, Engert F. Two-photon calcium imaging during fictive navigation in virtual environments. Frontiers in Neural Circuits. 7: 104. PMID 23761738 DOI: 10.3389/Fncir.2013.00104  0.769
2013 Ahrens MB, Orger MB, Robson DN, Li JM, Keller PJ. Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nature Methods. 10: 413-20. PMID 23524393 DOI: 10.1038/Nmeth.2434  0.811
2013 Kokel D, Dunn TW, Ahrens MB, Alshut R, Cheung CY, Saint-Amant L, Bruni G, Mateus R, van Ham TJ, Shiraki T, Fukada Y, Kojima D, Yeh JR, Mikut R, von Lintig J, et al. Identification of nonvisual photomotor response cells in the vertebrate hindbrain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 3834-43. PMID 23447595 DOI: 10.1523/Jneurosci.3689-12.2013  0.758
2013 Portugues R, Severi KE, Wyart C, Ahrens MB. Optogenetics in a transparent animal: circuit function in the larval zebrafish. Current Opinion in Neurobiology. 23: 119-26. PMID 23246238 DOI: 10.1016/J.Conb.2012.11.001  0.799
2012 Ahrens MB, Li JM, Orger MB, Robson DN, Schier AF, Engert F, Portugues R. Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature. 485: 471-7. PMID 22622571 DOI: 10.1038/Nature11057  0.786
2011 Ahrens MB, Sahani M. Observers exploit stochastic models of sensory change to help judge the passage of time. Current Biology : Cb. 21: 200-6. PMID 21256018 DOI: 10.1016/J.Cub.2010.12.043  0.542
2010 Englitz B, Ahrens M, Tolnai S, Rübsamen R, Sahani M, Jost J. Multilinear models of single cell responses in the medial nucleus of the trapezoid body. Network (Bristol, England). 21: 91-124. PMID 20735339 DOI: 10.3109/09548981003801996  0.567
2009 Englitz B, Ahrens M, Tolnai S, Rübsamen R, Sahani M, Jost J. Multilinear models for the auditory brainstem Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P312  0.496
2009 Ahrens MB, Sahani M. Inferring elapsed time from stochastic neural processes Advances in Neural Information Processing Systems 20 - Proceedings of the 2007 Conference 0.468
2008 Ahrens MB, Paninski L, Sahani M. Inferring input nonlinearities in neural encoding models. Network (Bristol, England). 19: 35-67. PMID 18300178 DOI: 10.1080/09548980701813936  0.576
2008 Ahrens MB, Linden JF, Sahani M. Nonlinearities and contextual influences in auditory cortical responses modeled with multilinear spectrotemporal methods. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 1929-42. PMID 18287509 DOI: 10.1523/Jneurosci.3377-07.2008  0.743
2006 Huys QJ, Ahrens MB, Paninski L. Efficient estimation of detailed single-neuron models. Journal of Neurophysiology. 96: 872-90. PMID 16624998 DOI: 10.1152/Jn.00079.2006  0.347
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