| Year |
Citation |
Score |
| 2024 |
Berrio A, Miranda E, Massri AJ, Afanassiev A, Schiebinger G, Wray GA, McClay DR. Reprogramming of cells during embryonic transfating: overcoming a reprogramming block. Development (Cambridge, England). PMID 39628450 DOI: 10.1242/dev.203152 |
0.68 |
|
| 2024 |
Massri AJ, Berrio A, Afanassiev A, Greenstreet L, Pipho K, Byrne M, Schiebinger G, McClay DR, Wray GA. Single-cell transcriptomics reveals evolutionary reconfiguration of embryonic cell fate specification in the sea urchin Heliocidaris erythrogramma. Genome Biology and Evolution. PMID 39587400 DOI: 10.1093/gbe/evae258 |
0.722 |
|
| 2024 |
McDonald BD, Massri AJ, Berrio A, Byrne M, McClay DR, Wray GA. Contrasting the development of larval and adult body plans during the evolution of biphasic lifecycles in sea urchins. Development (Cambridge, England). 151. PMID 39465623 DOI: 10.1242/dev.203015 |
0.681 |
|
| 2024 |
Wilson K, Manner C, Miranda E, Berrio A, Wray GA, McClay DR. An RNA interference approach for functional studies in the sea urchin and its use in analysis of Nodal signaling gradients. Developmental Biology. PMID 39098630 DOI: 10.1016/j.ydbio.2024.08.002 |
0.742 |
|
| 2024 |
Wilson K, Manner C, Miranda E, Berrio A, Wray GA, McClay DR. An RNA interference approach for functional studies in the sea urchin and its use in analysis of Nodal signaling gradients. Biorxiv : the Preprint Server For Biology. PMID 38979202 DOI: 10.1101/2024.06.20.599930 |
0.742 |
|
| 2024 |
Massri AJ, Berrio A, Afanassiev A, Greenstreet L, Pipho K, Byrne M, Schiebinger G, McClay DR, Wray GA. Single-cell transcriptomics reveals evolutionary reconfiguration of embryonic cell fate specification in the sea urchin . Biorxiv : the Preprint Server For Biology. PMID 38746376 DOI: 10.1101/2024.04.30.591752 |
0.78 |
|
| 2022 |
Davidson PL, Guo H, Swart JS, Massri AJ, Edgar A, Wang L, Berrio A, Devens HR, Koop D, Cisternas P, Zhang H, Zhang Y, Byrne M, Fan G, Wray GA. Recent reconfiguration of an ancient developmental gene regulatory network in Heliocidaris sea urchins. Nature Ecology & Evolution. PMID 36266460 DOI: 10.1038/s41559-022-01906-9 |
0.765 |
|
| 2021 |
Massri AJ, Greenstreet L, Afanassiev A, Berrio A, Wray GA, Schiebinger G, McClay DR. Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo. Development (Cambridge, England). PMID 34463740 DOI: 10.1242/dev.198614 |
0.768 |
|
| 2021 |
Tripp JA, Berrio A, McGraw LA, Matz MV, Davis JK, Inoue K, Thomas JW, Young LJ, Phelps SM. Comparative neurotranscriptomics reveal widespread species differences associated with bonding. Bmc Genomics. 22: 399. PMID 34058981 DOI: 10.1186/s12864-021-07720-0 |
0.663 |
|
| 2021 |
Massri AJ, Schiebinger GR, Berrio A, Wang L, Wray GA, McClay DR. Methodologies for Following EMT In Vivo at Single Cell Resolution. Methods in Molecular Biology (Clifton, N.J.). 2179: 303-314. PMID 32939729 DOI: 10.1007/978-1-0716-0779-4_23 |
0.746 |
|
| 2020 |
Berrio A, Gartner V, Wray GA. Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function. Peerj. 8: e10234. PMID 33088633 DOI: 10.7717/peerj.10234 |
0.671 |
|
| 2020 |
Davidson PL, Guo H, Wang L, Berrio A, Zhang H, Chang Y, Soborowski AL, McClay DR, Fan G, Wray GA. Chromosomal-level genome assembly of the sea urchin Lytechinus variegatus substantially improves functional genomic analyses. Genome Biology and Evolution. PMID 32433766 DOI: 10.1093/Gbe/Evaa101 |
0.728 |
|
| 2020 |
Berrio A, Haygood R, Wray GA. Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral. Bmc Genomics. 21: 359. PMID 32404186 DOI: 10.1186/S12864-020-6752-4 |
0.674 |
|
| 2019 |
Edsall LE, Berrio A, Majoros WH, Swain-Lenz D, Morrow S, Shibata Y, Safi A, Wray GA, Crawford GE, Allen AS. Evaluating chromatin accessibility differences across multiple primate species using a joint modelling approach. Genome Biology and Evolution. PMID 31599933 DOI: 10.1093/Gbe/Evz218 |
0.693 |
|
| 2019 |
Swain-Lenz D, Berrio A, Safi A, Crawford GE, Wray GA. Comparative analyses of chromatin landscape in white adipose tissue suggest humans may have less beigeing potential than other primates. Genome Biology and Evolution. PMID 31233101 DOI: 10.1093/Gbe/Evz134 |
0.644 |
|
| 2017 |
Berrio A, Guerrero RF, Aglyamova GV, Okhovat M, Matz MV, Phelps SM. Complex selection on a regulator of social cognition: Evidence of balancing selection, regulatory interactions and population differentiation in the prairie vole Avpr1a locus. Molecular Ecology. PMID 29218792 DOI: 10.1111/Mec.14455 |
0.658 |
|
| 2017 |
Phelps SM, Okhovat M, Berrio A. Individual Differences in Social Behavior and Cortical Vasopressin Receptor: Genetics, Epigenetics, and Evolution. Frontiers in Neuroscience. 11: 537. PMID 29085274 DOI: 10.3389/Fnins.2017.00537 |
0.636 |
|
| 2015 |
Okhovat M, Berrio A, Wallace G, Ophir AG, Phelps SM. Sexual fidelity trade-offs promote regulatory variation in the prairie vole brain. Science (New York, N.Y.). 350: 1371-4. PMID 26659055 DOI: 10.1126/Science.Aac5791 |
0.722 |
|
| 2015 |
Rubenstein DR, Skolnik H, Berrio A, Champagne FA, Phelps S, Solomon J. Sex-specific fitness effects of unpredictable early life conditions are associated with DNA methylation in the avian glucocorticoid receptor. Molecular Ecology. PMID 26588348 DOI: 10.1111/Mec.13483 |
0.634 |
|
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