ilias tagkopoulos - Publications

Princeton University, Princeton, NJ 

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Carlin DA, Caster RW, Wang X, Betzenderfer SA, Chen CX, Duong VM, Ryklansky CV, Alpekin A, Beaumont N, Kapoor H, Kim N, Mohabbot H, Pang B, Teel R, Whithaus L, ... Tagkopoulos I, et al. Kinetic Characterization of 100 Glycoside Hydrolase Mutants Enables the Discovery of Structural Features Correlated with Kinetic Constants. Plos One. 11: e0147596. PMID 26815142 DOI: 10.1371/journal.pone.0147596  0.72
2016 Meisner MH, Rosenheim JA, Tagkopoulos I, Peters DPC. A data-driven, machine learning framework for optimal pest management in cotton Ecosphere. 7. DOI: 10.1002/ecs2.1263  0.72
2015 Rai N, Ferreiro A, Neckelmann A, Soon A, Yao A, Siegel J, Facciotti MT, Tagkopoulos I. RiboTALE: A modular, inducible system for accurate gene expression control. Scientific Reports. 5: 10658. PMID 26023068 DOI: 10.1038/srep10658  0.72
2015 Kim M, Zorraquino V, Tagkopoulos I. Microbial forensics: predicting phenotypic characteristics and environmental conditions from large-scale gene expression profiles. Plos Computational Biology. 11: e1004127. PMID 25774498 DOI: 10.1371/journal.pcbi.1004127  0.72
2015 Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, ... ... Tagkopoulos I, et al. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature. 517: 571-5. PMID 25533953 DOI: 10.1038/nature14099  0.72
2015 Huynh L, Tagkopoulos I. Fast and Accurate Circuit Design Automation through Hierarchical Model Switching Acs Synthetic Biology. 4: 890-897. DOI: 10.1021/sb500339k  0.72
2014 Aung HH, Tsoukalas A, Rutledge JC, Tagkopoulos I. A systems biology analysis of brain microvascular endothelial cell lipotoxicity. Bmc Systems Biology. 8: 80. PMID 24993133 DOI: 10.1186/1752-0509-8-80  0.72
2014 Carrera J, Estrela R, Luo J, Rai N, Tsoukalas A, Tagkopoulos I. An integrative, multi-scale, genome-wide model reveals the phenotypic landscape of Escherichia coli. Molecular Systems Biology. 10: 735. PMID 24987114 DOI: 10.15252/msb.20145108  0.72
2014 Huynh L, Tagkopoulos I. Optimal part and module selection for synthetic gene circuit design automation. Acs Synthetic Biology. 3: 556-64. PMID 24933033 DOI: 10.1021/sb400139h  0.72
2014 Gultepe E, Green JP, Nguyen H, Adams J, Albertson T, Tagkopoulos I. From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system. Journal of the American Medical Informatics Association : Jamia. 21: 315-25. PMID 23959843 DOI: 10.1136/amiajnl-2013-001815  0.72
2013 Yao AI, Fenton TA, Owsley K, Seitzer P, Larsen DJ, Sit H, Lau J, Nair A, Tantiongloc J, Tagkopoulos I, Facciotti MT. Promoter element arising from the fusion of standard BioBrick parts. Acs Synthetic Biology. 2: 111-20. PMID 23656374 DOI: 10.1021/sb300114d  0.72
2013 Huynh L, Tsoukalas A, Köppe M, Tagkopoulos I. SBROME: a scalable optimization and module matching framework for automated biosystems design. Acs Synthetic Biology. 2: 263-73. PMID 23654271 DOI: 10.1021/sb300095m  0.72
2013 Pavlogiannis A, Mozhayskiy V, Tagkopoulos I. A flood-based information flow analysis and network minimization method for gene regulatory networks. Bmc Bioinformatics. 14: 137. PMID 23617932 DOI: 10.1186/1471-2105-14-137  0.72
2013 Dragosits M, Mozhayskiy V, Quinones-Soto S, Park J, Tagkopoulos I. Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli. Molecular Systems Biology. 9: 643. PMID 23385483 DOI: 10.1038/msb.2012.76  0.72
2013 Mozhayskiy V, Tagkopoulos I. Microbial evolution in vivo and in silico: methods and applications. Integrative Biology : Quantitative Biosciences From Nano to Macro. 5: 262-77. PMID 23096365 DOI: 10.1039/c2ib20095c  0.72
2013 Tagkopoulos I. Microbial factories under control: auto-regulatory control through engineered stress-induced feedback. Bioengineered. 4: 5-8. PMID 22922761 DOI: 10.4161/bioe.21935  0.72
2012 Liang Y, Wu H, Lei R, Chong RA, Wei Y, Lu X, Tagkopoulos I, Kung SY, Yang Q, Hu G, Kang Y. Transcriptional network analysis identifies BACH1 as a master regulator of breast cancer bone metastasis. The Journal of Biological Chemistry. 287: 33533-44. PMID 22875853 DOI: 10.1074/jbc.M112.392332  0.72
2012 Mozhayskiy V, Tagkopoulos I. Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution. Bmc Bioinformatics. 13: S13. PMID 22759418 DOI: 10.1186/1471-2105-13-S10-S13  0.72
2012 Mozhayskiy V, Tagkopoulos I. Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation. Bmc Bioinformatics. 13: S10. PMID 22759415 DOI: 10.1186/1471-2105-13-S10-S10  0.72
2012 Huynh L, Kececioglu J, Köppe M, Tagkopoulos I. Automatic design of synthetic gene circuits through mixed integer non-linear programming. Plos One. 7: e35529. PMID 22536398 DOI: 10.1371/journal.pone.0035529  0.72
2012 Dragosits M, Nicklas D, Tagkopoulos I. A synthetic biology approach to self-regulatory recombinant protein production in Escherichia coli. Journal of Biological Engineering. 6: 2. PMID 22463687 DOI: 10.1186/1754-1611-6-2  0.72
2012 Alexopoulos C, Loukis E, Charalabidis Y, Tagkopoulos I. A methodology for evaluating PSI e-infrastructures based on multiple value models Proceedings of the 2012 16th Panhellenic Conference On Informatics, Pci 2012. 37-43. DOI: 10.1109/PCi.2012.80  0.72
2012 Hunyh L, Tagkopoulos I. A robust, library-based, optimization-driven method for automatic gene circuit design 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182639  0.72
2012 Gultepe E, Nguyen H, Albertson T, Tagkopoulos I. A Bayesian network for early diagnosis of sepsis patients: A basis for a clinical decision support system 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182636  0.72
2011 Mozhayskiy V, Miller B, Ma KL, Tagkopoulos I. A scalable multi-scale framework for parallel simulation and visualization of microbial evolution Proceedings of the Teragrid 2011 Conference: Extreme Digital Discovery, Tg'11. DOI: 10.1145/2016741.2016749  0.72
2011 Mozhayskiy V, Tagkopoulos I. In silico evolution of multi-scale microbial systems in the presence of mobile genetic elements and horizontal gene transfer Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6674: 262-273. DOI: 10.1007/978-3-642-21260-4_26  0.72
2009 Tagkopoulos I. Rocks of ages Economist. 392.  0.72
2008 Tagkopoulos I, Liu YC, Tavazoie S. Predictive behavior within microbial genetic networks. Science (New York, N.Y.). 320: 1313-7. PMID 18467556 DOI: 10.1126/science.1154456  0.72
2006 Kung SY, Mak MW, Tagkopoulos I. Symmetric and asymmetric multi-modality biclustering analysis for microarray data matrix. Journal of Bioinformatics and Computational Biology. 4: 275-98. PMID 16819784 DOI: 10.1142/S0219720006002065  0.72
2005 Kung SY, Mak MW, Tagkopoulos I. Multi-metric and multi-substructure biclustering analysis for gene expression data. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 123-34. PMID 16447970 DOI: 10.1109/CSB.2005.40  0.72
2005 Tagkopoulos I, Serpanos D. Gene classification and regulatory prediction based on transcriptional modeling Proceedings of the Fifth Ieee International Symposium On Signal Processing and Information Technology. 2005: 29-34. DOI: 10.1109/ISSPIT.2005.1577065  0.72
2005 Tagkopoulos I, Slavov N, Kung SY. Multi-class biclustering and classification based or modeling of gene regulatory networks Proceedings - Bibe 2005: 5th Ieee Symposium On Bioinformatics and Bioengineering. 2005: 89-96. DOI: 10.1109/BIBE.2005.40  0.72
2005 Tagkopoulos I. A transcriptional approach to gene clustering Proceedings of the 2005 Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology, Cibcb '05. 2005.  0.72
2003 Tagkopoulos I, Zukowski C, Cavelier G, Anastassiou D. A custom FPGA for the simulation of gene regulatory networks Proceedings of the Ieee Great Lakes Symposium On Vlsi. 132-135.  0.72
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