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David M. Baker, Ph.D. - Publications

Affiliations: 
2010-2013 Geophysical Laboratory Carnegie Institution of Washington, Washington, DC, United States 
 2011-2013 National Museum of Natural History Smithsonian Institution, Washington, DC, United States 
 2013- School of Biological Sciences The University of Hong Kong, Hong Kong Island, Hong Kong, Hong Kong 
Area:
Coral Reef Ecology, Biogeochemistry
Website:
www.thelifeisotopic.com
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61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cybulski JD, Duprey NN, Thibodeau B, Yasuhara M, Geeraert N, Leonard N, Vonhof HB, Martínez-García A, Baker DM. Coral carbonate-bound isotopes reveal monsoonal influence on nitrogen sources in Southeastern China's Greater Bay Area from the mid-Holocene until the Anthropocene. Marine Pollution Bulletin. 197: 115757. PMID 37988964 DOI: 10.1016/j.marpolbul.2023.115757  0.825
2022 Cybulski JD, Skinner C, Wan Z, Wong CKM, Toonen RJ, Gaither MR, Soong K, Wyatt ASJ, Baker DM. Improving stable isotope assessments of inter- and intra-species variation in coral reef fish trophic strategies. Ecology and Evolution. 12: e9221. PMID 36172294 DOI: 10.1002/ece3.9221  0.328
2022 Martinez S, Grover R, Baker DM, Ferrier-Pagès C. Symbiodiniaceae Are the First Site of Heterotrophic Nitrogen Assimilation in Reef-Building Corals. Mbio. e0160122. PMID 36125280 DOI: 10.1128/mbio.01601-22  0.328
2022 Yau YYY, Geeraert N, Baker DM, Thibodeau B. Elucidating sources of atmospheric NO pollution in a heavily urbanized environment using multiple stable isotopes. The Science of the Total Environment. 832: 154781. PMID 35339541 DOI: 10.1016/j.scitotenv.2022.154781  0.778
2021 Moynihan MA, Goodkin NF, Morgan KM, Kho PYY, Lopes Dos Santos A, Lauro FM, Baker DM, Martin P. Coral-associated nitrogen fixation rates and diazotrophic diversity on a nutrient-replete equatorial reef. The Isme Journal. PMID 34294880 DOI: 10.1038/s41396-021-01054-1  0.325
2021 Conti-Jerpe IE, Thompson PD, Wong CWM, Oliveira NL, Duprey NN, Moynihan MA, Baker DM. Response to Comment on Trophic strategy and bleaching resistance in reef-building corals. Science Advances. 7. PMID 34078610 DOI: 10.1126/sciadv.abi8666  0.727
2021 Kim T, Lee JCY, Kang DH, Duprey NN, Leung KS, Archana A, Baker DM. Modification of fatty acid profile and biosynthetic pathway in symbiotic corals under eutrophication. The Science of the Total Environment. 771: 145336. PMID 33736184 DOI: 10.1016/j.scitotenv.2021.145336  0.736
2021 Geeraert N, Archana A, Xu MN, Kao SJ, Baker DM, Thibodeau B. Investigating the link between Pearl River-induced eutrophication and hypoxia in Hong Kong shallow coastal waters. The Science of the Total Environment. 772: 145007. PMID 33581521 DOI: 10.1016/j.scitotenv.2021.145007  0.745
2020 Cybulski JD, Husa SM, Duprey NN, Mamo BL, Tsang TPN, Yasuhara M, Xie JY, Qiu JW, Yokoyama Y, Baker DM. Coral reef diversity losses in China's Greater Bay Area were driven by regional stressors. Science Advances. 6. PMID 33008908 DOI: 10.1126/sciadv.abb1046  0.768
2020 McIlroy SE, Wong JCY, Baker DM. Competitive traits of coral symbionts may alter the structure and function of the microbiome. The Isme Journal. PMID 32518247 DOI: 10.1038/S41396-020-0697-0  0.772
2020 Conti-Jerpe IE, Thompson PD, Wong CWM, Oliveira NL, Duprey NN, Moynihan MA, Baker DM. Trophic strategy and bleaching resistance in reef-building corals. Science Advances. 6: eaaz5443. PMID 32300659 DOI: 10.1126/Sciadv.Aaz5443  0.777
2020 Freeman CJ, Easson CG, Matterson KO, Thacker RW, Baker DM, Paul VJ. Microbial symbionts and ecological divergence of Caribbean sponges: A new perspective on an ancient association. The Isme Journal. PMID 32203120 DOI: 10.1038/S41396-020-0625-3  0.411
2020 Richards JL, Sheng V, Yi CW, Ying CL, Ting NS, Sadovy Y, Baker D. Prevalence of critically endangered European eel () in Hong Kong supermarkets. Science Advances. 6: eaay0317. PMID 32181342 DOI: 10.1126/Sciadv.Aay0317  0.315
2020 Yau YY, Baker DM, Thibodeau B. Quantifying the impact of anthropogenic atmospheric nitrogen deposition on the generation of hypoxia under future emission scenarios in Chinese coastal waters. Environmental Science & Technology. PMID 32126755 DOI: 10.1021/Acs.Est.0C00706  0.355
2020 Wang A, Conti-Jerpe IE, Richards JL, Baker DM. sp. nov. (Nudibranchia, Trinchesiidae), a corallivorous pest species in the aquarium trade. Zookeys. 909: 1-24. PMID 32089632 DOI: 10.3897/Zookeys.909.35278  0.301
2020 Geeraert N, Duprey NN, McIlroy SE, Thompson PD, Goldstein BR, LaRoche C, Kim K, Raymundo LJ, Baker DM. The Anthropogenic Nitrogen Footprint of a Tropical Lagoon: Spatial Variability in Padina sp. δ15N Values1 Pacific Science. 74: 19. DOI: 10.2984/74.1.2  0.774
2020 Röthig T, Bravo H, Corley A, Prigge T, Chung A, Yu V, McIlroy SE, Bulling M, Sweet M, Baker DM. Environmental flexibility in Oulastrea crispata in a highly urbanised environment: a microbial perspective Coral Reefs. 39: 649-662. DOI: 10.1007/S00338-020-01938-2  0.791
2019 Duprey NN, Wang XT, Kim T, Cybulski JD, Vonhof HB, Crutzen PJ, Haug GH, Sigman DM, Martínez-García A, Baker DM. Megacity development and the demise of coastal coral communities: evidence from coral skeleton δ N records in the Pearl River estuary. Global Change Biology. PMID 31732999 DOI: 10.1111/Gcb.14923  0.81
2019 Lachs L, Johari NAM, Le DQ, Safuan CDM, Duprey NN, Tanaka K, Hong TC, Ory NC, Bachok Z, Baker DM, Kochzius M, Shirai K. Effects of tourism-derived sewage on coral reefs: Isotopic assessments identify effective bioindicators. Marine Pollution Bulletin. 148: 85-96. PMID 31422307 DOI: 10.1016/J.Marpolbul.2019.07.059  0.786
2019 McIlroy SE, Thompson PD, Yuan FL, Bonebrake TC, Baker DM. Subtropical thermal variation supports persistence of corals but limits productivity of coral reefs. Proceedings. Biological Sciences. 286: 20190882. PMID 31311470 DOI: 10.1098/Rspb.2019.0882  0.78
2019 Chen J, McIlroy SE, Archana A, Baker DM, Panagiotou G. A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments. Microbiome. 7: 104. PMID 31307536 DOI: 10.1186/S40168-019-0714-6  0.786
2019 Bonebrake TC, Guo F, Dingle C, Baker DM, Kitching RL, Ashton LA. Integrating Proximal and Horizon Threats to Biodiversity for Conservation. Trends in Ecology & Evolution. PMID 31130317 DOI: 10.1016/J.Tree.2019.04.001  0.331
2019 Burkepile DE, Shantz AA, Adam TC, Munsterman KS, Speare KE, Ladd MC, Rice MM, Ezzat L, McIlroy S, Wong JCY, Baker DM, Brooks AJ, Schmitt RJ, Holbrook SJ. Nitrogen Identity Drives Differential Impacts of Nutrients on Coral Bleaching and Mortality Ecosystems. 23: 798-811. DOI: 10.1007/S10021-019-00433-2  0.783
2018 Wong CWM, Conti-Jerpe I, Raymundo LJ, Dingle C, Araujo G, Ponzo A, Baker DM. Whale Shark Tourism: Impacts on Coral Reefs in the Philippines. Environmental Management. PMID 30515531 DOI: 10.1007/S00267-018-1125-3  0.749
2018 Perkins MJ, Mak YKY, Tao LSR, Wong ATL, Yau JKC, Baker DM, Leung KMY. Short-term tissue decomposition alters stable isotope values and C:N ratio, but does not change relationships between lipid content, C:N ratio, and Δδ13C in marine animals. Plos One. 13: e0199680. PMID 30020988 DOI: 10.1371/Journal.Pone.0199680  0.373
2018 Archana A, Thibodeau B, Geeraert N, Xu MN, Kao SJ, Baker DM. Nitrogen sources and cycling revealed by dual isotopes of nitrate in a complex urbanized environment. Water Research. 142: 459-470. PMID 29913387 DOI: 10.1016/J.Watres.2018.06.004  0.783
2018 Baker DM, Freeman CJ, Wong JCY, Fogel ML, Knowlton N. Climate change promotes parasitism in a coral symbiosis. The Isme Journal. PMID 29379177 DOI: 10.1038/S41396-018-0046-8  0.712
2018 Kwon MJ, Tudge C, Kim K, Baker D, Macavoy SE. Museum Collections Yield Information on Nitrogen Sources for Coastal Gulf of Mexico, North Carolina, and Caribbean Sea Invertebrates, 1850 to 2004 Journal of Shellfish Research. 37: 1159. DOI: 10.2983/035.037.0525  0.773
2018 Shin CP, Hoffman A, Lee W, Kendrick RC, Baker DM, Bonebrake TC. Stable isotopes of Lithosiini and lichens in Hong Kong show the biodindicator potential of lichenivorous moths Journal of Asia-Pacific Entomology. 21: 1110-1115. DOI: 10.1016/J.Aspen.2018.08.002  0.434
2018 Bacalan V, Poinsatte T, Baker DM, Fogel ML, Kim K. Stable isotope analyses of manatee bones measure historical nitrogen pollution in Florida waters, 1975–2010 Marine Biology. 165. DOI: 10.1007/S00227-018-3349-4  0.797
2017 Duprey NN, Wang XT, Thompson PD, Pleadwell JE, Raymundo LJ, Kim K, Sigman DM, Baker DM. Life and death of a sewage treatment plant recorded in a coral skeleton δ(15)N record. Marine Pollution Bulletin. PMID 28483141 DOI: 10.1016/J.Marpolbul.2017.04.023  0.788
2017 Heshiki Y, Dissanayake T, Zheng T, Kang K, Yueqiong N, Xu Z, Sarkar C, Woo PCY, Chow BKC, Baker D, Yan A, Webster CJ, Panagiotou G, Li J. Toward a Metagenomic Understanding on the Bacterial Composition and Resistome in Hong Kong Banknotes. Frontiers in Microbiology. 8: 632. PMID 28450856 DOI: 10.3389/Fmicb.2017.00632  0.376
2017 Wong MC, Duprey NN, Baker DM. New insights on the nitrogen footprint of a coastal megalopolis from coral-hosted Symbiodinium δ15N. Environmental Science & Technology. PMID 28085273 DOI: 10.1021/Acs.Est.6B03407  0.791
2017 Duprey NN, McIlroy SE, Ng TPT, Thompson PD, Kim T, Wong JCY, Wong CWM, Husa SM, Li SMH, Williams GA, Baker DM. Facing a wicked problem with optimism: issues and priorities for coral conservation in Hong Kong Biodiversity and Conservation. 26: 2521-2545. DOI: 10.1007/S10531-017-1383-Z  0.765
2016 Baker DM, Murdoch TJ, Conti-Jerpe I, Fogel M. Investigating Bermuda's pollution history through stable isotope analyses of modern and museum-held gorgonian corals. Marine Pollution Bulletin. PMID 27600272 DOI: 10.1016/J.Marpolbul.2016.08.069  0.675
2016 Archana A, Li L, Shuh-Ji K, Thibodeau B, Baker DM. Variations in nitrate isotope composition of wastewater effluents by treatment type in Hong Kong. Marine Pollution Bulletin. PMID 27456239 DOI: 10.1016/J.Marpolbul.2016.07.019  0.36
2016 Duprey NN, Yasuhara M, Baker DM. Reefs of tomorrow: Eutrophication reduces coral biodiversity in an urbanized seascape. Global Change Biology. PMID 27414018 DOI: 10.1111/Gcb.13432  0.759
2015 Cheung PK, Yuen KL, Li PF, Lau WH, Chiu CM, Yuen SW, Baker DM. To swim or not to swim? A disagreement between microbial indicators on beach water quality assessment in Hong Kong. Marine Pollution Bulletin. PMID 26608502 DOI: 10.1016/J.Marpolbul.2015.11.029  0.326
2015 Baker DM, Freeman CJ, Knowlton N, Thacker RW, Kim K, Fogel ML. Productivity links morphology, symbiont specificity and bleaching in the evolution of Caribbean octocoral symbioses. The Isme Journal. PMID 25989369 DOI: 10.1038/Ismej.2015.71  0.786
2015 Pinkerton K, Baker DM, Cuddy MR, Raymundo LJ, Meyer KA, Kim K. Nitrogen dynamics on Guam as revealed by the seagrass Enhalus acoroides Marine Ecology Progress Series. 528: 117-126. DOI: 10.3354/Meps11270  0.755
2015 Freeman CJ, Baker DM, Easson CG, Thacker RW. Shifts in sponge-microbe mutualisms across an experimental irradiance gradient Marine Ecology Progress Series. 526: 41-53. DOI: 10.3354/Meps11249  0.415
2015 Freeman CJ, Easson CG, Baker DM. Niche structure of marine sponges from temperate hard-bottom habitats within Gray's Reef National Marine Sanctuary Journal of the Marine Biological Association of the United Kingdom. DOI: 10.1017/S0025315415000363  0.456
2015 Wong JCY, Thompson P, Xie JY, Qiu JW, Baker DM. Symbiodinium clade C generality among common scleractinian corals in subtropical Hong Kong Regional Studies in Marine Science. DOI: 10.1016/J.Rsma.2016.02.005  0.371
2014 Freeman CJ, Easson CG, Baker DM. Metabolic diversity and niche structure in sponges from the Miskito Cays, Honduras. Peerj. 2: e695. PMID 25548731 DOI: 10.7717/Peerj.695  0.439
2014 Easson CG, Slattery M, Baker DM, Gochfeld DJ. Complex ecological associations: Competition and facilitation in a sponge-algal interaction Marine Ecology Progress Series. 507: 153-167. DOI: 10.3354/Meps10852  0.353
2013 Fiore CL, Baker DM, Lesser MP. Nitrogen biogeochemistry in the Caribbean sponge, Xestospongia muta: a source or sink of dissolved inorganic nitrogen? Plos One. 8: e72961. PMID 23991166 DOI: 10.1371/Journal.Pone.0072961  0.451
2013 Redding JE, Myers-Miller RL, Baker DM, Fogel M, Raymundo LJ, Kim K. Link between sewage-derived nitrogen pollution and coral disease severity in Guam. Marine Pollution Bulletin. 73: 57-63. PMID 23816306 DOI: 10.1016/J.Marpolbul.2013.06.002  0.813
2013 Baker DM, Andras JP, Jordán-Garza AG, Fogel ML. Nitrate competition in a coral symbiosis varies with temperature among Symbiodinium clades. The Isme Journal. 7: 1248-51. PMID 23407311 DOI: 10.1038/Ismej.2013.12  0.777
2013 Freeman CJ, Thacker RW, Baker DM, Fogel ML. Quality or quantity: is nutrient transfer driven more by symbiont identity and productivity than by symbiont abundance? The Isme Journal. 7: 1116-25. PMID 23407307 DOI: 10.1038/Ismej.2013.7  0.638
2013 Baker DM, Weigt L, Fogel M, Knowlton N. Ancient DNA from coral-hosted Symbiodinium reveal a static mutualism over the last 172 years. Plos One. 8: e55057. PMID 23405111 DOI: 10.1371/Journal.Pone.0055057  0.665
2013 Baker DM, Rodríguez-Martínez RE, Fogel ML. Tourism's nitrogen footprint on a Mesoamerican coral reef Coral Reefs. 32: 691-699. DOI: 10.1007/S00338-013-1040-2  0.698
2012 Moynihan MA, Baker DM, Mmochi AJ. Isotopic and microbial indicators of sewage pollution from Stone Town, Zanzibar, Tanzania. Marine Pollution Bulletin. 64: 1348-55. PMID 22682879 DOI: 10.1016/J.Marpolbul.2012.05.001  0.491
2012 Rodríguez-Martínez RE, Jordán-Garza AG, Baker DM, Jordán-Dahlgren E. Competitive interactions between corals and Trididemnum solidum on Mexican Caribbean reefs Coral Reefs. 31: 571-577. DOI: 10.1007/S00338-011-0871-Y  0.302
2011 Baker DM, Kim K, Andras JP, Sparks JP. Light-mediated 15N fractionation in Caribbean gorgonian octocorals: Implications for pollution monitoring Coral Reefs. 30: 709-717. DOI: 10.1007/S00338-011-0759-X  0.804
2010 Baker DM, Jordán-Dahlgren E, Maldonado MA, Harvell CD. Sea fan corals provide a stable isotope baseline for assessing sewage pollution in the Mexican Caribbean Limnology and Oceanography. 55: 2139-2149. DOI: 10.4319/Lo.2010.55.5.2139  0.795
2010 Rivest EB, Baker DM, Rypien KL, Harvell CD. Nitrogen source preference of Aspergillus sydowii, an infective agent associated with aspergillosis of sea fan corals Limnology and Oceanography. 55: 386-392. DOI: 10.4319/Lo.2010.55.1.0386  0.801
2010 Baker DM, Webster KL, Kim K. Caribbean octocorals record changing carbon and nitrogen sources from 1862 to 2005 Global Change Biology. 16: 2701-2710. DOI: 10.1111/J.1365-2486.2010.02167.X  0.785
2009 Page CA, Baker DM, Harvell CD, Golbuu Y, Raymundo L, Neale SJ, Rosell KB, Rypien KL, Andras JP, Willis BL. Influence of marine reserves on coral disease prevalence. Diseases of Aquatic Organisms. 87: 135-50. PMID 20095248 DOI: 10.3354/Dao02112  0.749
2009 Rypien KL, Baker DM. Isotopic labeling and antifungal resistance as tracers of gut passage of the sea fan pathogen Aspergillus sydowii. Diseases of Aquatic Organisms. 86: 1-7. PMID 19899343 DOI: 10.3354/Dao02106  0.782
2008 Jordán-Garza AG, Maldonado MA, Baker DM, Rodríguez-Martínez RE. High abundance of Diadema antillarum on a Mexican reef Coral Reefs. 27: 295. DOI: 10.1007/S00338-007-0338-3  0.308
2007 Baker DM, MacAvoy SE, Kim K. Relationship between water quality, δ15N, and aspergillosis of Caribbean sea fan corals Marine Ecology Progress Series. 343: 123-130. DOI: 10.3354/Meps06937  0.781
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