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Julien Tap, Ph. D. - Publications

Affiliations: 
Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 
Area:
"gut, microbiota, metagenomics"
Website:
http://www.embl.de/research/units/scb/bork/members/index.php?s_personId=6320
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tap J, Störsrud S, Le Nevé B, Cotillard A, Pons N, Doré J, Öhman L, Törnblom H, Derrien M, Simrén M. Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome. Microbiome. 9: 74. PMID 33771219 DOI: 10.1186/s40168-021-01018-9  0.539
2019 Labus JS, Osadchiy V, Hsiao EY, Tap J, Derrien M, Gupta A, Tillisch K, Le Nevé B, Grinsvall C, Ljungberg M, Öhman L, Törnblom H, Simren M, Mayer EA. Evidence for an association of gut microbial Clostridia with brain functional connectivity and gastrointestinal sensorimotor function in patients with irritable bowel syndrome, based on tripartite network analysis. Microbiome. 7: 45. PMID 30898151 DOI: 10.1186/S40168-019-0656-Z  0.311
2019 Tap J, Cools-Portier S, Pavan S, Druesne A, Öhman L, Törnblom H, Simren M, Derrien M. Effects of the long-term storage of human fecal microbiota samples collected in RNAlater. Scientific Reports. 9: 601. PMID 30679604 DOI: 10.1038/S41598-018-36953-5  0.361
2019 Torre AMdl, Nevé BL, Tap J, Cotillard A, Río MPd, Batet FP, Manichanh C, Azpiroz F. 1017 – Effects of a Flatulogenic Diet Combined with a Fermented Milk Product on Markers of Flatulence and Intestinal Microbiome Composition in Healthy Subjects Gastroenterology. 156. DOI: 10.1016/S0016-5085(19)37349-4  0.329
2018 Ruppé E, Ghozlane A, Tap J, Pons N, Alvarez AS, Maziers N, Cuesta T, Hernando-Amado S, Clares I, Martínez JL, Coque TM, Baquero F, Lanza VF, Máiz L, Goulenok T, et al. Prediction of the intestinal resistome by a three-dimensional structure-based method. Nature Microbiology. PMID 30478291 DOI: 10.1038/S41564-018-0292-6  0.641
2018 Sundin J, Stridsberg M, Tap J, Derrien M, Le Nevé B, Doré J, Törnblom H, Simrén M, Öhman L. Fecal chromogranins and secretogranins are linked to the fecal and mucosal intestinal bacterial composition of IBS patients and healthy subjects. Scientific Reports. 8: 16821. PMID 30429499 DOI: 10.1038/S41598-018-35241-6  0.628
2018 Bennet SMP, Sundin J, Magnusson MK, Strid H, Tap J, Derrien M, Le Nevé B, Doré J, Törnblom H, Simrén M, Öhman L. Altered intestinal antibacterial gene expression response profile in irritable bowel syndrome is linked to bacterial composition and immune activation. Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. e13468. PMID 30230134 DOI: 10.1111/Nmo.13468  0.606
2018 Tap J, Derrien M, Nevé BL, Ohman L, Törnblom H, Störsrud S, Simren M. Mo1942 - Association Between Dietary Habits and the Gut Metagenome in Irritable Bowel Syndrome Gastroenterology. 154. DOI: 10.1016/S0016-5085(18)32906-8  0.317
2016 Veiga P, Tap J, Derrien M. [Gut microbiota, the key for a better diet?] Medecine Sciences : M/S. 32: 999-1002. PMID 28008841 DOI: 10.1051/Medsci/20163211016  0.433
2016 Tap J, Derrien M, Törnblom H, Brazeilles R, Cools-Portier S, Doré J, Störsrud S, Le Nevé B, Öhman L, Simrén M. Identification of an Intestinal Microbiota Signature Associated With Severity of Irritable Bowel Syndrome. Gastroenterology. PMID 27725146 DOI: 10.1053/J.Gastro.2016.09.049  0.582
2015 Tap J, Furet JP, Bensaada M, Philippe C, Roth H, Rabot S, Lakhdari O, Lombard V, Henrissat B, Corthier G, Fontaine E, Doré J, Leclerc M. Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults. Environmental Microbiology. PMID 26235304 DOI: 10.1111/1462-2920.13006  0.641
2015 Tap J, Ohman L, Törnblom H, Nevé BL, Brazeilles R, Doré J, Derrien M, Simren M. 753 Identification of a Gut Microbial Signature Linked to Severity of Irritable Bowel Syndrome Gastroenterology. 148. DOI: 10.1016/S0016-5085(15)30488-1  0.34
2015 Cultrone A, Tap J, Lapaque N, Doré J, Blottière HM. Metagenomics of the human intestinal tract: From who is there to what is done there Current Opinion in Food Science. 4: 64-68. DOI: 10.1016/J.Cofs.2015.05.011  0.424
2014 Zeller G, Tap J, Voigt AY, Sunagawa S, Kultima JR, Costea PI, Amiot A, Böhm J, Brunetti F, Habermann N, Hercog R, Koch M, Luciani A, Mende DR, Schneider MA, et al. Potential of fecal microbiota for early-stage detection of colorectal cancer. Molecular Systems Biology. 10: 766. PMID 25432777 DOI: 10.15252/Msb.20145645  0.755
2014 Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, ... ... Tap J, et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nature Biotechnology. 32: 822-8. PMID 24997787 DOI: 10.1038/Nbt.2939  0.757
2014 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto J, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Addendum: Enterotypes of the human gut microbiome Nature. 506: 516-516. DOI: 10.1038/Nature13075  0.769
2013 Sunagawa S, Schloissnig S, Arumugam M, Forslund K, Mitreva M, Tap J, Zhu A, Waller A, Mende DR, Kultima JR, Martin J, Kota K, Sunyaev SR, Typas A, Weinstock GM, et al. Individuality and temporal stability of the human gut microbiome. Central Asian Journal of Global Health. 2: 120. PMID 29805877 DOI: 10.5195/Cajgh.2013.120  0.722
2013 Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, et al. Metagenomic species profiling using universal phylogenetic marker genes. Nature Methods. 10: 1196-9. PMID 24141494 DOI: 10.1038/Nmeth.2693  0.752
2013 Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, ... ... Tap J, et al. Richness of human gut microbiome correlates with metabolic markers. Nature. 500: 541-6. PMID 23985870 DOI: 10.1038/Nature12506  0.722
2013 Kong LC, Tap J, Aron-Wisnewsky J, Pelloux V, Basdevant A, Bouillot JL, Zucker JD, Doré J, Clément K. Gut microbiota after gastric bypass in human obesity: increased richness and associations of bacterial genera with adipose tissue genes. The American Journal of Clinical Nutrition. 98: 16-24. PMID 23719559 DOI: 10.3945/Ajcn.113.058743  0.624
2013 Supply P, Marceau M, Mangenot S, Roche D, Rouanet C, Khanna V, Majlessi L, Criscuolo A, Tap J, Pawlik A, Fiette L, Orgeur M, Fabre M, Parmentier C, Frigui W, et al. Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis. Nature Genetics. 45: 172-9. PMID 23291586 DOI: 10.1038/Ng.2517  0.326
2013 Schloissnig S, Arumugam M, Sunagawa S, Mitreva M, Tap J, Zhu A, Waller A, Mende DR, Kultima JR, Martin J, Kota K, Sunyaev SR, Weinstock GM, Bork P. Genomic variation landscape of the human gut microbiome. Nature. 493: 45-50. PMID 23222524 DOI: 10.1038/Nature11711  0.736
2011 Lakhdari O, Tap J, Béguet-Crespel F, Le Roux K, de Wouters T, Cultrone A, Nepelska M, Lefèvre F, Doré J, Blottière HM. Identification of NF-κB modulation capabilities within human intestinal commensal bacteria. Journal of Biomedicine & Biotechnology. 2011: 282356. PMID 21765633 DOI: 10.1155/2011/282356  0.571
2011 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Enterotypes of the human gut microbiome. Nature. 473: 174-80. PMID 21508958 DOI: 10.1038/Nature09944  0.761
2011 Sobhani I, Tap J, Roudot-Thoraval F, Roperch JP, Letulle S, Langella P, Corthier G, Tran Van Nhieu J, Furet JP. Microbial dysbiosis in colorectal cancer (CRC) patients. Plos One. 6: e16393. PMID 21297998 DOI: 10.1371/Journal.Pone.0016393  0.343
2011 Arumugam M, Raes J, Pelletier E, Paslier DL, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, et al. Erratum: Enterotypes of the human gut microbiome (Nature (2011) 473 (174-180)) Nature. 474: 666-666. DOI: 10.1038/Nature10187  0.687
2010 Lakhdari O, Cultrone A, Tap J, Gloux K, Bernard F, Ehrlich SD, Lefèvre F, Doré J, Blottière HM. Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-κB modulation in the human gut. Plos One. 5. PMID 20927194 DOI: 10.1371/Journal.Pone.0013092  0.39
2010 Furet JP, Kong LC, Tap J, Poitou C, Basdevant A, Bouillot JL, Mariat D, Corthier G, Doré J, Henegar C, Rizkalla S, Clément K. Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers. Diabetes. 59: 3049-57. PMID 20876719 DOI: 10.2337/Db10-0253  0.587
2010 Tasse L, Bercovici J, Pizzut-Serin S, Robe P, Tap J, Klopp C, Cantarel BL, Coutinho PM, Henrissat B, Leclerc M, Doré J, Monsan P, Remaud-Simeon M, Potocki-Veronese G. Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. Genome Research. 20: 1605-12. PMID 20841432 DOI: 10.1101/Gr.108332.110  0.658
2010 Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, ... ... Tap J, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 464: 59-65. PMID 20203603 DOI: 10.1038/Nature08821  0.798
2009 Tap J, Mondot S, Levenez F, Pelletier E, Caron C, Furet JP, Ugarte E, Muñoz-Tamayo R, Paslier DL, Nalin R, Dore J, Leclerc M. Towards the human intestinal microbiota phylogenetic core. Environmental Microbiology. 11: 2574-84. PMID 19601958 DOI: 10.1111/J.1462-2920.2009.01982.X  0.698
2009 Furet JP, Firmesse O, Gourmelon M, Bridonneau C, Tap J, Mondot S, Doré J, Corthier G. Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR. Fems Microbiology Ecology. 68: 351-62. PMID 19302550 DOI: 10.1111/J.1574-6941.2009.00671.X  0.65
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