| Year |
Citation |
Score |
| 2019 |
Childs D, Bach K, Franken H, Anders S, Kurzawa N, Bantscheff M, Savitski M, Huber W. Non-parametric analysis of thermal proteome profiles reveals novel drug-binding proteins. Molecular & Cellular Proteomics : McP. PMID 31582558 DOI: 10.1074/Mcp.Tir119.001481 |
0.302 |
|
| 2018 |
Argelaguet R, Velten B, Arnol D, Dietrich S, Zenz T, Marioni JC, Buettner F, Huber W, Stegle O. Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets Molecular Systems Biology. 14. PMID 29925568 DOI: 10.15252/Msb.20178124 |
0.315 |
|
| 2017 |
Papatheodorou I, Fonseca NA, Keays M, Tang YA, Barrera E, Bazant W, Burke M, Füllgrabe A, Fuentes AM, George N, Huerta L, Koskinen S, Mohammed S, Geniza M, Preece J, ... ... Huber W, et al. Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Research. PMID 29165655 DOI: 10.1093/Nar/Gkx1158 |
0.312 |
|
| 2017 |
Bunina D, Štefl M, Huber F, Khmelinskii A, Meurer M, Barry JD, Kats I, Kirrmaier D, Huber W, Knop M. Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities. Nucleic Acids Research. PMID 28977638 DOI: 10.1093/Nar/Gkx737 |
0.303 |
|
| 2016 |
Symmons O, Pan L, Remeseiro S, Aktas T, Klein F, Huber W, Spitz F. The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances. Developmental Cell. PMID 27867070 DOI: 10.1016/J.Devcel.2016.10.015 |
0.302 |
|
| 2016 |
Billmann M, Horn T, Fischer B, Sandmann T, Huber W, Boutros M. A genetic interaction map of cell cycle regulators. Molecular Biology of the Cell. 27: 1397-407. PMID 26912791 DOI: 10.1091/Mbc.E15-07-0467 |
0.315 |
|
| 2015 |
Love MI, Anders S, Kim V, Huber W. RNA-Seq workflow: gene-level exploratory analysis and differential expression F1000research. 4: 1070-1070. PMID 26674615 DOI: 10.12688/F1000Research.7035.1 |
0.306 |
|
| 2015 |
Petryszak R, Keays M, Tang YA, Fonseca NA, Barrera E, Burdett T, Füllgrabe A, Fuentes AM, Jupp S, Koskinen S, Mannion O, Huerta L, Megy K, Snow C, Williams E, ... ... Huber W, et al. Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Research. PMID 26481351 DOI: 10.1093/Nar/Gkv1045 |
0.31 |
|
| 2015 |
Velten L, Anders S, Pekowska A, Järvelin AI, Huber W, Pelechano V, Steinmetz LM. Single-cell polyadenylation site mapping reveals 3' isoform choice variability. Molecular Systems Biology. 11: 812. PMID 26040288 DOI: 10.15252/Msb.20156198 |
0.303 |
|
| 2015 |
Fischer B, Sandmann T, Horn T, Billmann M, Chaudhary V, Huber W, Boutros M. A map of directional genetic interactions in a metazoan cell. Elife. 4. PMID 25748138 DOI: 10.7554/Elife.05464 |
0.301 |
|
| 2015 |
Anders S, Pyl PT, Huber W. HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics (Oxford, England). 31: 166-9. PMID 25260700 DOI: 10.1093/Bioinformatics/Btu638 |
0.304 |
|
| 2014 |
Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology. 15: 550. PMID 25516281 DOI: 10.1186/S13059-014-0550-8 |
0.309 |
|
| 2014 |
Cabezas-Wallscheid N, Klimmeck D, Hansson J, Lipka DB, Reyes A, Wang Q, Weichenhan D, Lier A, von Paleske L, Renders S, Wünsche P, Zeisberger P, Brocks D, Gu L, Herrmann C, ... ... Huber W, et al. Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis. Cell Stem Cell. 15: 507-22. PMID 25158935 DOI: 10.1016/J.Exphem.2015.06.058 |
0.306 |
|
| 2014 |
Gupta I, Clauder-Münster S, Klaus B, Järvelin AI, Aiyar RS, Benes V, Wilkening S, Huber W, Pelechano V, Steinmetz LM. Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions. Molecular Systems Biology. 10: 719. PMID 24569168 DOI: 10.1002/Msb.135068 |
0.302 |
|
| 2014 |
Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, et al. Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Research. 42: D926-32. PMID 24304889 DOI: 10.1093/Nar/Gkt1270 |
0.334 |
|
| 2013 |
Anders S, McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W, Robinson MD. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nature Protocols. 8: 1765-86. PMID 23975260 DOI: 10.1038/Nprot.2013.099 |
0.318 |
|
| 2013 |
Landry JJ, Pyl PT, Rausch T, Zichner T, Tekkedil MM, Stütz AM, Jauch A, Aiyar RS, Pau G, Delhomme N, Gagneur J, Korbel JO, Huber W, Steinmetz LM. The genomic and transcriptomic landscape of a HeLa cell line. G3 (Bethesda, Md.). 3: 1213-24. PMID 23550136 DOI: 10.1534/G3.113.005777 |
0.31 |
|
| 2012 |
Anders S, Reyes A, Huber W. Detecting differential usage of exons from RNA-seq data. Genome Research. 22: 2008-17. PMID 22722343 DOI: 10.1101/Gr.133744.111 |
0.325 |
|
| 2011 |
Schlattl A, Anders S, Waszak SM, Huber W, Korbel JO. Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions. Genome Research. 21: 2004-13. PMID 21862627 DOI: 10.1101/Gr.122614.111 |
0.313 |
|
| 2011 |
Beisvåg V, Kauffmann A, Malone J, Foy C, Salit M, Schimmel H, Bongcam-Rudloff E, Landegren U, Parkinson H, Huber W, Brazma A, Sandvik AK, Kuiper M. Contributions of the EMERALD project to assessing and improving microarray data quality. Biotechniques. 50: 27-31. PMID 21231919 DOI: 10.2144/000113591 |
0.301 |
|
| 2010 |
Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biology. 11: 1-12. PMID 20979621 DOI: 10.1186/Gb-2010-11-10-R106 |
0.305 |
|
| 2010 |
Fuchs F, Pau G, Kranz D, Sklyar O, Budjan C, Steinbrink S, Horn T, Pedal A, Huber W, Boutros M. Clustering phenotype populations by genome-wide RNAi and multiparametric imaging Molecular Systems Biology. 6. PMID 20531400 DOI: 10.1038/Msb.2010.25 |
0.325 |
|
| 2010 |
Lukk M, Kapushesky M, Nikkilä J, Parkinson H, Goncalves A, Huber W, Ukkonen E, Brazma A. A global map of human gene expression. Nature Biotechnology. 28: 322-4. PMID 20379172 DOI: 10.1038/Nbt0410-322 |
0.303 |
|
| 2010 |
Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, ... ... Huber W, et al. Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature. 464: 721-7. PMID 20360735 DOI: 10.1038/Nature08869 |
0.323 |
|
| 2010 |
Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, Bork P, Huber W, Steinmetz LM. High-resolution transcription atlas of the mitotic cell cycle in budding yeast. Genome Biology. 11: R24. PMID 20193063 DOI: 10.1186/Gb-2010-11-3-R24 |
0.308 |
|
| 2010 |
Anders S, Huber W. Differential expression analysis for sequence count data Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4282.1 |
0.31 |
|
| 2008 |
Toedling J, Huber W. Analyzing ChIP-chip data using bioconductor. Plos Computational Biology. 4. PMID 19043553 DOI: 10.1371/Journal.Pcbi.1000227 |
0.331 |
|
| 2007 |
Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE. CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data. Bioinformatics (Oxford, England). 23: 771-3. PMID 17234641 DOI: 10.1093/Bioinformatics/Btl641 |
0.311 |
|
| 2006 |
Huber W, Toedling J, Steinmetz LM. Transcript mapping with high-density oligonucleotide tiling arrays. Bioinformatics (Oxford, England). 22: 1963-70. PMID 16787969 DOI: 10.1093/Bioinformatics/Btl289 |
0.311 |
|
| 2006 |
David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, Steinmetz LM. A high-resolution map of transcription in the yeast genome Proceedings of the National Academy of Sciences of the United States of America. 103: 5320-5325. PMID 16569694 DOI: 10.1073/Pnas.0601091103 |
0.309 |
|
| 2006 |
Mehrle A, Rosenfelder H, Schupp I, del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S. The LIFEdb database in 2006. Nucleic Acids Research. 34: D415-8. PMID 16381901 DOI: 10.1093/Nar/Gkj139 |
0.315 |
|
| 2005 |
Arlt D, Huber W, Liebel U, Schmidt C, Majety M, Sauermann M, Rosenfelder H, Bechtel S, Mehrle A, Bannasch D, Schupp I, Seiler M, Simpson JC, Hahne F, Moosmayer P, et al. Functional profiling: from microarrays via cell-based assays to novel tumor relevant modulators of the cell cycle. Cancer Research. 65: 7733-42. PMID 16140941 DOI: 10.1158/0008-5472.Can-05-0642 |
0.321 |
|
| 2005 |
Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics (Oxford, England). 21: 3439-40. PMID 16082012 DOI: 10.1093/Bioinformatics/Bti525 |
0.302 |
|
| 2004 |
Wiemann S, Arlt D, Huber W, Wellenreuther R, Schleeger S, Mehrle A, Bechtel S, Sauermann M, Korf U, Pepperkok R, Sültmann H, Poustka A. From ORFeome to biology: a functional genomics pipeline. Genome Research. 14: 2136-44. PMID 15489336 DOI: 10.1101/Gr.2576704 |
0.315 |
|
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