Gasper Tkacik - Publications

Affiliations: 
Physics IST Austria, Klosterneuburg, Niederösterreich, Austria 
Area:
computational neuroscience, biological networks, biophysics

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Maoz O, Tkačik G, Esteki MS, Kiani R, Schneidman E. Learning probabilistic neural representations with randomly connected circuits. Proceedings of the National Academy of Sciences of the United States of America. 117: 25066-25073. PMID 32948691 DOI: 10.1073/pnas.1912804117  1
2020 Berry MJ, Tkačik G. Clustering of Neural Activity: A Design Principle for Population Codes. Frontiers in Computational Neuroscience. 14: 20. PMID 32231528 DOI: 10.3389/fncom.2020.00020  1
2019 Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal Decoding of Cellular Identities in a Genetic Network. Cell. 176: 844-855.e15. PMID 30712870 DOI: 10.1016/j.cell.2019.01.007  1
2018 Botella-Soler V, Deny S, Martius G, Marre O, Tkačik G. Nonlinear decoding of a complex movie from the mammalian retina. Plos Computational Biology. 14: e1006057. PMID 29746463 DOI: 10.1371/journal.pcbi.1006057  1
2018 Bod'ová K, Mitchell GJ, Harpaz R, Schneidman E, Tkačik G. Probabilistic models of individual and collective animal behavior. Plos One. 13: e0193049. PMID 29513700 DOI: 10.1371/journal.pone.0193049  1
2018 Chalk M, Marre O, Tkačik G. Toward a unified theory of efficient, predictive, and sparse coding. Proceedings of the National Academy of Sciences of the United States of America. 115: 186-191. PMID 29259111 DOI: 10.1073/pnas.1711114115  1
2017 Deny S, Ferrari U, Macé E, Yger P, Caplette R, Picaud S, Tkačik G, Marre O. Multiplexed computations in retinal ganglion cells of a single type. Nature Communications. 8: 1964. PMID 29213097 DOI: 10.1038/s41467-017-02159-y  1
2017 Harpaz R, Tkačik G, Schneidman E. Discrete modes of social information processing predict individual behavior of fish in a group. Proceedings of the National Academy of Sciences of the United States of America. PMID 28874581 DOI: 10.1073/pnas.1703817114  1
2017 Savin C, Tkačik G. Maximum entropy models as a tool for building precise neural controls. Current Opinion in Neurobiology. 46: 120-126. PMID 28869818 DOI: 10.1016/j.conb.2017.08.001  0.88
2016 Prentice JS, Marre O, Ioffe ML, Loback AR, Tkačik G, Berry MJ. Error-Robust Modes of the Retinal Population Code. Plos Computational Biology. 12: e1005148. PMID 27855154 DOI: 10.1371/journal.pcbi.1005148  1
2016 Sokolowski TR, Walczak AM, Bialek W, Tkačik G. Extending the dynamic range of transcription factor action by translational regulation. Physical Review. E. 93: 022404. PMID 26986359 DOI: 10.1103/PhysRevE.93.022404  1
2015 Tuğrul M, Paixão T, Barton NH, Tkačik G. Dynamics of Transcription Factor Binding Site Evolution. Plos Genetics. 11: e1005639. PMID 26545200 DOI: 10.1371/journal.pgen.1005639  1
2015 Tkačik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ, Bialek W. Thermodynamics and signatures of criticality in a network of neurons. Proceedings of the National Academy of Sciences of the United States of America. 112: 11508-13. PMID 26330611 DOI: 10.1073/pnas.1514188112  1
2015 Sokolowski TR, Tkačik G. Optimizing information flow in small genetic networks. IV. Spatial coupling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 062710. PMID 26172739 DOI: 10.1103/PhysRevE.91.062710  0.68
2015 Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population. Plos Computational Biology. 11: e1004304. PMID 26132103 DOI: 10.1371/journal.pcbi.1004304  1
2015 Tka?ik G, Dubuis JO, Petkova MD, Gregor T. Positional information, positional error, and readout precision in morphogenesis: a mathematical framework. Genetics. 199: 39-59. PMID 25361898 DOI: 10.1534/genetics.114.171850  1
2015 Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004304  1
2014 Hermundstad AM, Briguglio JJ, Conte MM, Victor JD, Balasubramanian V, Tka?ik G. Variance predicts salience in central sensory processing. Elife. 3. PMID 25396297 DOI: 10.7554/eLife.03722  1
2014 Rieckh G, Tkačik G. Noise and information transmission in promoters with multiple internal States. Biophysical Journal. 106: 1194-204. PMID 24606943 DOI: 10.1016/j.bpj.2014.01.014  0.92
2014 Tka?ik G, Ghosh A, Schneidman E, Segev R. Adaptation to changes in higher-order stimulus statistics in the salamander retina. Plos One. 9: e85841. PMID 24465742 DOI: 10.1371/journal.pone.0085841  1
2014 Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ. Searching for collective behavior in a large network of sensory neurons. Plos Computational Biology. 10: e1003408. PMID 24391485 DOI: 10.1371/journal.pcbi.1003408  1
2013 Simmons KD, Prentice JS, Tka?ik G, Homann J, Yee HK, Palmer SE, Nelson PC, Balasubramanian V. Transformation of stimulus correlations by the retina. Plos Computational Biology. 9: e1003344. PMID 24339756 DOI: 10.1371/journal.pcbi.1003344  1
2013 Dubuis JO, Tkacik G, Wieschaus EF, Gregor T, Bialek W. Positional information, in bits. Proceedings of the National Academy of Sciences of the United States of America. 110: 16301-8. PMID 24089448 DOI: 10.1073/pnas.1315642110  1
2013 Rajan K, Marre O, Tka?ik G. Learning quadratic receptive fields from neural responses to natural stimuli. Neural Computation. 25: 1661-92. PMID 23607557 DOI: 10.1162/NECO_a_00463  1
2013 Granot-Atedgi E, Tka?ik G, Segev R, Schneidman E. Stimulus-dependent maximum entropy models of neural population codes. Plos Computational Biology. 9: e1002922. PMID 23516339 DOI: 10.1371/journal.pcbi.1002922  1
2013 Tka?ik G, Granot-Atedgi E, Segev R, Schneidman E. Retinal metric: a stimulus distance measure derived from population neural responses. Physical Review Letters. 110: 058104. PMID 23414051 DOI: 10.1103/PhysRevLett.110.058104  1
2013 Stephens GJ, Mora T, Tkačik G, Bialek W. Statistical thermodynamics of natural images. Physical Review Letters. 110: 018701. PMID 23383852 DOI: 10.1103/PhysRevLett.110.018701  1
2013 Berry MJ, Tka?ik G, Dubuis J, Marre O, Da Silveira RA. A simple method for estimating the entropy of neural activity Journal of Statistical Mechanics: Theory and Experiment. 2013. DOI: 10.1088/1742-5468/2013/03/P03015  1
2013 Tka?ik G, Marre O, Mora T, Amodei D, Berry MJ, Bialek W. The simplest maximum entropy model for collective behavior in a neural network Journal of Statistical Mechanics: Theory and Experiment. 2013. DOI: 10.1088/1742-5468/2013/03/P03011  1
2012 Tkačik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 041903. PMID 22680494 DOI: 10.1103/PhysRevE.85.041903  1
2011 Prentice JS, Homann J, Simmons KD, Tkačik G, Balasubramanian V, Nelson PC. Fast, scalable, Bayesian spike identification for multi-electrode arrays. Plos One. 6: e19884. PMID 21799725 DOI: 10.1371/journal.pone.0019884  1
2011 Tka?ik G, Garrigan P, Ratliff C, Mil?inski G, Klein JM, Seyfarth LH, Sterling P, Brainard DH, Balasubramanian V. Natural images from the birthplace of the human eye. Plos One. 6: e20409. PMID 21698187 DOI: 10.1371/journal.pone.0020409  1
2011 Tkačik G, Walczak AM. Information transmission in genetic regulatory networks: a review. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 23: 153102. PMID 21460423 DOI: 10.1088/0953-8984/23/15/153102  1
2011 Little SC, Tkačik G, Kneeland TB, Wieschaus EF, Gregor T. The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA. Plos Biology. 9: e1000596. PMID 21390295 DOI: 10.1371/journal.pbio.1000596  1
2010 Tkacik G, Prentice JS, Victor JD, Balasubramanian V. Local statistics in natural scenes predict the saliency of synthetic textures. Proceedings of the National Academy of Sciences of the United States of America. 107: 18149-54. PMID 20923876 DOI: 10.1073/pnas.0914916107  1
2010 Tkacik G, Prentice JS, Balasubramanian V, Schneidman E. Optimal population coding by noisy spiking neurons. Proceedings of the National Academy of Sciences of the United States of America. 107: 14419-24. PMID 20660781 DOI: 10.1073/pnas.1004906107  1
2010 Walczak AM, Tkacik G, Bialek W. Optimizing information flow in small genetic networks. II. Feed-forward interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 041905. PMID 20481751 DOI: 10.1103/PhysRevE.81.041905  1
2009 Tkacik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 031920. PMID 19905159 DOI: 10.1103/PhysRevE.80.031920  1
2009 Kryazhimskiy S, Tkacik G, Plotkin JB. The dynamics of adaptation on correlated fitness landscapes. Proceedings of the National Academy of Sciences of the United States of America. 106: 18638-43. PMID 19858497 DOI: 10.1073/pnas.0905497106  1
2009 Tkacik G, Bialek W. Diffusion, dimensionality, and noise in transcriptional regulation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 051901. PMID 19518474 DOI: 10.1103/PhysRevE.79.051901  1
2008 Tkacik G, Callan CG, Bialek W. Information capacity of genetic regulatory elements. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 011910. PMID 18763985 DOI: 10.1103/PhysRevE.78.011910  1
2008 Tkacik G, Callan CG, Bialek W. Information flow and optimization in transcriptional regulation. Proceedings of the National Academy of Sciences of the United States of America. 105: 12265-70. PMID 18719112 DOI: 10.1073/pnas.0806077105  1
2008 Tkacik G, Gregor T, Bialek W. The role of input noise in transcriptional regulation. Plos One. 3: e2774. PMID 18648612 DOI: 10.1371/journal.pone.0002774  1
2008 Tkacik G, Magnasco MO. Decoding spike timing: the differential reverse-correlation method. Bio Systems. 93: 90-100. PMID 18597928 DOI: 10.1016/j.biosystems.2008.04.011  1
2007 Kinney JB, Tkacik G, Callan CG. Precise physical models of protein-DNA interaction from high-throughput data. Proceedings of the National Academy of Sciences of the United States of America. 104: 501-6. PMID 17197415 DOI: 10.1073/pnas.0609908104  1
2005 Slonim N, Atwal GS, Tkacik G, Bialek W. Information-based clustering. Proceedings of the National Academy of Sciences of the United States of America. 102: 18297-302. PMID 16352721 DOI: 10.1073/pnas.0507432102  1
2002 Chiozzi G, Gustafsson B, Jeram B, Plesko M, Sekoranja M, Tkacik G, Zagar K. CORBA-based common software for the ALMA project Proceedings of Spie - the International Society For Optical Engineering. 4848: 43-54. DOI: 10.1117/12.461036  1
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