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Gasper Tkacik - Publications

Affiliations: 
Physics IST Austria, Klosterneuburg, Niederösterreich, Austria 
Area:
computational neuroscience, biological networks, biophysics
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nardin M, Csicsvari J, Tkačik G, Savin C. The structure of hippocampal CA1 interactions optimizes spatial coding across experience. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 37758476 DOI: 10.1523/JNEUROSCI.0194-23.2023  0.804
2022 Zoller B, Gregor T, Tkačik G. Eukaryotic gene regulation at equilibrium, or non? Current Opinion in Systems Biology. 31. PMID 36590072 DOI: 10.1016/j.coisb.2022.100435  0.659
2021 Chalk M, Tkacik G, Marre O. Inferring the function performed by a recurrent neural network. Plos One. 16: e0248940. PMID 33857170 DOI: 10.1371/journal.pone.0248940  0.773
2021 Tkačik G, Gregor T. The many bits of positional information. Development (Cambridge, England). 148. PMID 33526425 DOI: 10.1242/dev.176065  0.673
2020 Maoz O, Tkačik G, Esteki MS, Kiani R, Schneidman E. Learning probabilistic neural representations with randomly connected circuits. Proceedings of the National Academy of Sciences of the United States of America. 117: 25066-25073. PMID 32948691 DOI: 10.1073/Pnas.1912804117  0.799
2020 Berry MJ, Tkačik G. Clustering of Neural Activity: A Design Principle for Population Codes. Frontiers in Computational Neuroscience. 14: 20. PMID 32231528 DOI: 10.3389/Fncom.2020.00020  0.382
2020 Tomanek I, Grah R, Lagator M, Andersson AMC, Bollback JP, Tkačik G, Guet CC. Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. PMID 32152532 DOI: 10.1038/S41559-020-1132-7  0.302
2019 Cepeda-Humerez SA, Ruess J, Tkačik G. Estimating information in time-varying signals. Plos Computational Biology. 15: e1007290. PMID 31479447 DOI: 10.1371/Journal.Pcbi.1007290  0.387
2019 Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal Decoding of Cellular Identities in a Genetic Network. Cell. 176: 844-855.e15. PMID 30712870 DOI: 10.1016/J.Cell.2019.01.007  0.773
2018 Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology & Evolution. PMID 30201966 DOI: 10.1038/S41559-018-0651-Y  0.35
2018 De Martino D, Mc Andersson A, Bergmiller T, Guet CC, Tkačik G. Statistical mechanics for metabolic networks during steady state growth. Nature Communications. 9: 2988. PMID 30061556 DOI: 10.1038/S41467-018-05417-9  0.311
2018 Granados AA, Pietsch JMJ, Cepeda-Humerez SA, Farquhar IL, Tkačik G, Swain PS. Distributed and dynamic intracellular organization of extracellular information. Proceedings of the National Academy of Sciences of the United States of America. PMID 29784812 DOI: 10.1073/Pnas.1716659115  0.337
2018 Botella-Soler V, Deny S, Martius G, Marre O, Tkačik G. Nonlinear decoding of a complex movie from the mammalian retina. Plos Computational Biology. 14: e1006057. PMID 29746463 DOI: 10.1371/Journal.Pcbi.1006057  0.693
2018 Bod'ová K, Mitchell GJ, Harpaz R, Schneidman E, Tkačik G. Probabilistic models of individual and collective animal behavior. Plos One. 13: e0193049. PMID 29513700 DOI: 10.1371/Journal.Pone.0193049  0.768
2018 Chalk M, Marre O, Tkačik G. Toward a unified theory of efficient, predictive, and sparse coding. Proceedings of the National Academy of Sciences of the United States of America. 115: 186-191. PMID 29259111 DOI: 10.1073/Pnas.1711114115  0.792
2018 Ferrari U, Deny S, Chalk M, Tkačik G, Marre O, Mora T. Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons Physical Review E. 98. DOI: 10.1103/Physreve.98.042410  0.78
2017 Deny S, Ferrari U, Macé E, Yger P, Caplette R, Picaud S, Tkačik G, Marre O. Multiplexed computations in retinal ganglion cells of a single type. Nature Communications. 8: 1964. PMID 29213097 DOI: 10.1038/S41467-017-02159-Y  0.669
2017 Chait R, Ruess J, Bergmiller T, Tkačik G, Guet CC. Shaping bacterial population behavior through computer-interfaced control of individual cells. Nature Communications. 8: 1535. PMID 29142298 DOI: 10.1038/S41467-017-01683-1  0.326
2017 Humplik J, Tkačik G. Probabilistic models for neural populations that naturally capture global coupling and criticality. Plos Computational Biology. 13: e1005763. PMID 28926564 DOI: 10.1371/Journal.Pcbi.1005763  0.427
2017 Harpaz R, Tkačik G, Schneidman E. Discrete modes of social information processing predict individual behavior of fish in a group. Proceedings of the National Academy of Sciences of the United States of America. PMID 28874581 DOI: 10.1073/Pnas.1703817114  0.76
2017 Savin C, Tkačik G. Maximum entropy models as a tool for building precise neural controls. Current Opinion in Neurobiology. 46: 120-126. PMID 28869818 DOI: 10.1016/J.Conb.2017.08.001  0.414
2017 Friedlander T, Prizak R, Barton NH, Tkačik G. Evolution of new regulatory functions on biophysically realistic fitness landscapes. Nature Communications. 8: 216. PMID 28790313 DOI: 10.1038/S41467-017-00238-8  0.346
2017 Zagorski M, Tabata Y, Brandenberg N, Lutolf MP, Tkačik G, Bollenbach T, Briscoe J, Kicheva A. Decoding of position in the developing neural tube from antiparallel morphogen gradients. Science (New York, N.Y.). 356: 1379-1383. PMID 28663499 DOI: 10.1126/Science.Aam5887  0.38
2016 Prentice JS, Marre O, Ioffe ML, Loback AR, Tkačik G, Berry MJ. Error-Robust Modes of the Retinal Population Code. Plos Computational Biology. 12: e1005148. PMID 27855154 DOI: 10.1371/Journal.Pcbi.1005148  0.756
2016 Hillenbrand P, Gerland U, Tkačik G. Beyond the French Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional Information. Plos One. 11: e0163628. PMID 27676252 DOI: 10.1371/Journal.Pone.0163628  0.383
2016 Friedlander T, Prizak R, Guet CC, Barton NH, Tkačik G. Intrinsic limits to gene regulation by global crosstalk. Nature Communications. 7: 12307. PMID 27489144 DOI: 10.1038/Ncomms12307  0.32
2016 Sokolowski TR, Walczak AM, Bialek W, Tkačik G. Extending the dynamic range of transcription factor action by translational regulation. Physical Review. E. 93: 022404. PMID 26986359 DOI: 10.1103/Physreve.93.022404  0.67
2016 Tkačik G, Bialek W. Information Processing in Living Systems Annual Review of Condensed Matter Physics. 7: 89-117. DOI: 10.1146/Annurev-Conmatphys-031214-014803  0.575
2015 Cepeda-Humerez SA, Rieckh G, Tkačik G. Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation. Physical Review Letters. 115: 248101. PMID 26705657 DOI: 10.1103/Physrevlett.115.248101  0.356
2015 Tkačik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ, Bialek W. Thermodynamics and signatures of criticality in a network of neurons. Proceedings of the National Academy of Sciences of the United States of America. 112: 11508-13. PMID 26330611 DOI: 10.1073/Pnas.1514188112  0.775
2015 Sokolowski TR, Tkačik G. Optimizing information flow in small genetic networks. IV. Spatial coupling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 062710. PMID 26172739 DOI: 10.1103/Physreve.91.062710  0.384
2015 Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population. Plos Computational Biology. 11: e1004304. PMID 26132103 DOI: 10.1371/Journal.Pcbi.1004304  0.794
2015 Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004304  0.76
2014 Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ. Searching for collective behavior in a large network of sensory neurons. Plos Computational Biology. 10: e1003408. PMID 24391485 DOI: 10.1371/Journal.Pcbi.1003408  0.777
2014 Hermundstad AM, Briguglio JJ, Conte MM, Victor JD, Balasubramanian V, Tkačik G. Author response: Variance predicts salience in central sensory processing Elife. DOI: 10.7554/Elife.03722.027  0.761
2014 Hermundstad A, Briguglio J, Conte M, Victor J, Balasubramanian V, Tkacik G. Natural scene statistics predict allocation of resources to nonlinear visual feature extraction Journal of Vision. 14: 26-26. DOI: 10.1167/14.15.26  0.757
2013 Dubuis JO, Tkacik G, Wieschaus EF, Gregor T, Bialek W. Positional information, in bits. Proceedings of the National Academy of Sciences of the United States of America. 110: 16301-8. PMID 24089448 DOI: 10.1073/Pnas.1315642110  0.78
2013 Stephens GJ, Mora T, Tkačik G, Bialek W. Statistical thermodynamics of natural images. Physical Review Letters. 110: 018701. PMID 23383852 DOI: 10.1103/Physrevlett.110.018701  0.719
2013 Briguglio J, Hermundstad A, Conte M, Victor JD, Tkacik G, Balasubramanian V. Perceptual salience of fourth-order visual textures and natural scene statistics F1000research. 13: 1234-1234. DOI: 10.7490/F1000Research.1093346.1  0.759
2013 Hermundstad AM, Briguglio J, Conte MM, Victor JD, Tkacik G, Balasubramanian V. Natural scene statistics relate to perceptual salience of second-, third-, and fourth-order spatial correlations Bmc Neuroscience. 14. DOI: 10.1186/1471-2202-14-S1-P16  0.779
2012 Tkačik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. III. A self-interacting gene. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 041903. PMID 22680494 DOI: 10.1103/Physreve.85.041903  0.668
2011 Merel J, Tkacik G, Gifford A, Prentice J, Balasubramanian V. The statistics of contour fragments in natural scenes Nature Precedings. 6: 1-1. DOI: 10.1038/Npre.2011.6366.1  0.675
2011 Simmons KD, Prentice JS, Homann J, Tkacik G, Nelson PC, Balasubramanian V. Retinal adaptation to spatial correlations Nature Precedings. 1-1. DOI: 10.1038/Npre.2011.6344.1  0.788
2010 Tkacik G, Prentice JS, Victor JD, Balasubramanian V. Local statistics in natural scenes predict the saliency of synthetic textures. Proceedings of the National Academy of Sciences of the United States of America. 107: 18149-54. PMID 20923876 DOI: 10.1038/Npre.2011.6009.1  0.736
2010 Tkacik G, Prentice JS, Balasubramanian V, Schneidman E. Optimal population coding by noisy spiking neurons. Proceedings of the National Academy of Sciences of the United States of America. 107: 14419-24. PMID 20660781 DOI: 10.1073/Pnas.1004906107  0.806
2010 Walczak AM, Tkacik G, Bialek W. Optimizing information flow in small genetic networks. II. Feed-forward interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 041905. PMID 20481751 DOI: 10.1103/Physreve.81.041905  0.704
2010 Prentice J, Homann J, Simmons K, Tkacik G, Nelson P, Balasubramanian V. Scalable, Bayesian, multi-electrode spike sorting Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P183  0.767
2009 Tkacik G, Walczak AM, Bialek W. Optimizing information flow in small genetic networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 031920. PMID 19905159 DOI: 10.1103/Physreve.80.031920  0.694
2009 Tkacik G, Bialek W. Diffusion, dimensionality, and noise in transcriptional regulation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 051901. PMID 19518474 DOI: 10.1103/Physreve.79.051901  0.548
2009 Tkacik G, Prentice J, Schneidman E, Balasubramanian V. Optimal correlation codes in populations of noisy spiking neurons Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-O13  0.8
2008 Tkacik G, Callan CG, Bialek W. Information capacity of genetic regulatory elements. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 011910. PMID 18763985 DOI: 10.1103/Physreve.78.011910  0.782
2008 Tkacik G, Callan CG, Bialek W. Information flow and optimization in transcriptional regulation. Proceedings of the National Academy of Sciences of the United States of America. 105: 12265-70. PMID 18719112 DOI: 10.1073/Pnas.0806077105  0.783
2008 Tkacik G, Gregor T, Bialek W. The role of input noise in transcriptional regulation. Plos One. 3: e2774. PMID 18648612 DOI: 10.1371/Journal.Pone.0002774  0.753
2008 Tkacik G, Magnasco MO. Decoding spike timing: the differential reverse-correlation method. Bio Systems. 93: 90-100. PMID 18597928 DOI: 10.1016/J.Biosystems.2008.04.011  0.366
2007 Kinney JB, Tkacik G, Callan CG. Precise physical models of protein-DNA interaction from high-throughput data. Proceedings of the National Academy of Sciences of the United States of America. 104: 501-6. PMID 17197415 DOI: 10.1073/Pnas.0609908104  0.768
2005 Slonim N, Atwal GS, Tkacik G, Bialek W. Information-based clustering. Proceedings of the National Academy of Sciences of the United States of America. 102: 18297-302. PMID 16352721 DOI: 10.1073/Pnas.0507432102  0.544
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