Gasper Tkacik - Related publications

Physics IST Austria, Klosterneuburg, Niederösterreich, Austria 
computational neuroscience, biological networks, biophysics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Huh N, Kim SP, Lee J, Sohn JW. Extracting single-trial neural interaction using latent dynamical systems model. Molecular Brain. 14: 32. PMID 33588875 DOI: 10.1186/s13041-021-00740-7   
2021 Wendling KP, Ly C. Statistical Analysis of Decoding Performances of Diverse Populations of Neurons. Neural Computation. 1-38. PMID 33400901 DOI: 10.1162/neco_a_01355   
2021 Sebastian J, Sur M, Murthy HA, Magimai-Doss M. Signal-to-signal neural networks for improved spike estimation from calcium imaging data. Plos Computational Biology. 17: e1007921. PMID 33647015 DOI: 10.1371/journal.pcbi.1007921   
2021 Wang Z, Liu J, Ma Y, Chen B, Zheng N, Ren P. Perturbation of Spike Timing Benefits Neural Network Performance on Similarity Search. Ieee Transactions On Neural Networks and Learning Systems. PMID 33606643 DOI: 10.1109/TNNLS.2021.3056694   
2021 Pomeroy AE, Peña MI, Houser JR, Dixit G, Dohlman HG, Elston TC, Errede B. A predictive model of gene expression reveals the role of network motifs in the mating response of yeast. Science Signaling. 14. PMID 33593998 DOI: 10.1126/scisignal.abb5235   
2021 Wang G, Ma S, Wu Y, Pei J, Zhao R, Shi L. End-to-End Implementation of Various Hybrid Neural Networks on a Cross-Paradigm Neuromorphic Chip. Frontiers in Neuroscience. 15: 615279. PMID 33603643 DOI: 10.3389/fnins.2021.615279   
2021 Reing K, Ver Steeg G, Galstyan A. Discovering Higher-Order Interactions Through Neural Information Decomposition. Entropy (Basel, Switzerland). 23. PMID 33430463 DOI: 10.3390/e23010079   
2021 Platkiewicz J, Saccomano Z, McKenzie S, English D, Amarasingham A. Monosynaptic inference via finely-timed spikes. Journal of Computational Neuroscience. PMID 33507429 DOI: 10.1007/s10827-020-00770-5   
2021 Dai Y, Yamamoto H, Sakuraba M, Sato S. Computational Efficiency of a Modular Reservoir Network for Image Recognition. Frontiers in Computational Neuroscience. 15: 594337. PMID 33613220 DOI: 10.3389/fncom.2021.594337   
2021 Yu W, Zhao C, Huang B. MoniNet With Concurrent Analytics of Temporal and Spatial Information for Fault Detection in Industrial Processes. Ieee Transactions On Cybernetics. PMID 33544684 DOI: 10.1109/TCYB.2021.3050398   
2021 Zhang Z, Constandinou TG. Adaptive spike detection and hardware optimization towards autonomous, high-channel-count BMIs. Journal of Neuroscience Methods. 109103. PMID 33617917 DOI: 10.1016/j.jneumeth.2021.109103   
2021 Choi H, Bajic IV. Affine Transformation-Based Deep Frame Prediction. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. PMID 33635788 DOI: 10.1109/TIP.2021.3060803   
2021 Lomeli LM, Iniguez A, Tata P, Jena N, Liu ZY, Van Etten R, Lander AD, Shahbaba B, Lowengrub JS, Minin VN. Optimal experimental design for mathematical models of haematopoiesis. Journal of the Royal Society, Interface. 18: 20200729. PMID 33499768 DOI: 10.1098/rsif.2020.0729   
2021 Zhao L. Deep Neural Networks For Predicting Restricted Mean Survival Times. Bioinformatics (Oxford, England). PMID 33399818 DOI: 10.1093/bioinformatics/btaa1082   
2021 Jang J, Jang S, Choi S, Wang G. Run-off election-based decision method for the training and inference process in an artificial neural network. Scientific Reports. 11: 895. PMID 33441631 DOI: 10.1038/s41598-020-79452-2   
2021 Ivaturi P, Gadaleta M, Pandey AC, Pazzani M, Steinhubl SR, Quer G. A Comprehensive Explanation Framework for Biomedical Time Series Classification. Ieee Journal of Biomedical and Health Informatics. PMID 33617456 DOI: 10.1109/JBHI.2021.3060997   
2021 Tkačik G, Gregor T. The many bits of positional information. Development (Cambridge, England). 148. PMID 33526425 DOI: 10.1242/dev.176065   
2021 Picó J, Vignoni A, Boada Y. Stochastic Differential Equations for Practical Simulation of Gene Circuits. Methods in Molecular Biology (Clifton, N.J.). 2229: 41-90. PMID 33405216 DOI: 10.1007/978-1-0716-1032-9_2   
2021 Alicea B, Gordon R, Portegys TE. Data-Theoretical Synthesis of the Early Developmental Process. Neuroinformatics. PMID 33449345 DOI: 10.1007/s12021-020-09508-1   
2021 Gu M, Zhao Z, Jin W, Hong R, Wu F. Graph-based Multi-interaction Network for Video Question Answering. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. PMID 33476268 DOI: 10.1109/TIP.2021.3051756   
2021 Diegmiller R, Zhang L, Gameiro M, Barr J, Imran Alsous J, Schedl P, Shvartsman SY, Mischaikow K. Mapping parameter spaces of biological switches. Plos Computational Biology. 17: e1008711. PMID 33556054 DOI: 10.1371/journal.pcbi.1008711   
2021 Hu R, Chen B, Xu J, Van Kaick O, Deussen O, Huang H. Shape-driven Coordinate Ordering for Star Glyph Sets via Reinforcement Learning. Ieee Transactions On Visualization and Computer Graphics. PMID 33460381 DOI: 10.1109/TVCG.2021.3052167   
2021 Lima MS. Information theory inspired optimization algorithm for efficient service orchestration in distributed systems. Plos One. 16: e0242285. PMID 33395689 DOI: 10.1371/journal.pone.0242285   
2021 Hsu IS, Moses AM. Stochastic models for single-cell data: Current challenges and the way forward. The Febs Journal. PMID 33570798 DOI: 10.1111/febs.15760   
2021 Qi Y, Jin L, Luo X, Zhou M. Recurrent Neural Dynamics Models for Perturbed Nonstationary Quadratic Programs: A Control-Theoretical Perspective. Ieee Transactions On Neural Networks and Learning Systems. PMID 33449881 DOI: 10.1109/TNNLS.2020.3041364   
2021 Roshan D, Ferguson J, Pedlar CR, Simpkin A, Wyns W, Sullivan F, Newell J. A comparison of methods to generate adaptive reference ranges in longitudinal monitoring. Plos One. 16: e0247338. PMID 33606821 DOI: 10.1371/journal.pone.0247338   
2021 Melin P, Sánchez D, Monica JC, Castillo O. Optimization using the firefly algorithm of ensemble neural networks with type-2 fuzzy integration for COVID-19 time series prediction. Soft Computing. 1-38. PMID 33456340 DOI: 10.1007/s00500-020-05549-5   
2021 Wang N, Zhou W, Li H. Learning Diverse Models for End-to-end Ensemble Tracking. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. PMID 33471758 DOI: 10.1109/TIP.2021.3051471   
2021 Liu J, Yang X, Zhu Y, Lei Y, Cai J, Wang M, Huan Z, Lin X. How Neuronal Noises Influence the Spiking Neural Networks's Cognitive Learning Process: A Preliminary Study. Brain Sciences. 11. PMID 33503833 DOI: 10.3390/brainsci11020153   
2021 DiRenzo GV, Miller DAW, Hossack BR, Sigafus BH, Howell PE, Muths E, Grant EHC. Accommodating the role of site memory in dynamic species distribution models. Ecology. e03315. PMID 33630306 DOI: 10.1002/ecy.3315   
2021 Chaves M, de Jong H. Qualitative Modeling, Analysis and Control of Synthetic Regulatory Circuits. Methods in Molecular Biology (Clifton, N.J.). 2229: 1-40. PMID 33405215 DOI: 10.1007/978-1-0716-1032-9_1   
2021 Kurasov P, Mugnolo D, Wolf V. Analytic solutions for stochastic hybrid models of gene regulatory networks. Journal of Mathematical Biology. 82: 9. PMID 33496854 DOI: 10.1007/s00285-021-01549-7   
2021 Rodríguez-Mier P, Poupin N, de Blasio C, Le Cam L, Jourdan F. DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. Plos Computational Biology. 17: e1008730. PMID 33571201 DOI: 10.1371/journal.pcbi.1008730   
2021 Shao Y, Cheng Y, Shah RU, Weir CR, Bray BE, Zeng-Treitler Q. Shedding Light on the Black Box: Explaining Deep Neural Network Prediction of Clinical Outcomes. Journal of Medical Systems. 45: 5. PMID 33404886 DOI: 10.1007/s10916-020-01701-8   
2021 Xu H, Xu D, Zhang N, Zhang Y, Gao R. Protein-Protein Interaction Prediction Based on Spectral Radius and General Regression Neural Network. Journal of Proteome Research. PMID 33555893 DOI: 10.1021/acs.jproteome.0c00871   
2021 Zhang S, Xia Y, Xia Y, Wang J. Matrix-Form Neural Networks for Complex-Variable Basis Pursuit Problem With Application to Sparse Signal Reconstruction. Ieee Transactions On Cybernetics. PMID 33471773 DOI: 10.1109/TCYB.2020.3042519   
2021 Zhu J, Deng F, Zhao J, Zheng H. Attention-based parallel networks (APNet) for PM spatiotemporal prediction. The Science of the Total Environment. 769: 145082. PMID 33485205 DOI: 10.1016/j.scitotenv.2021.145082   
2021 Chen H, Liu YJ, Liu L, Tong S, Gao Z. Anti-Saturation-Based Adaptive Sliding-Mode Control for Active Suspension Systems With Time-Varying Vertical Displacement and Speed Constraints. Ieee Transactions On Cybernetics. PMID 33476276 DOI: 10.1109/TCYB.2020.3042613   
2021 Béal J, Pantolini L, Noël V, Barillot E, Calzone L. Personalized logical models to investigate cancer response to BRAF treatments in melanomas and colorectal cancers. Plos Computational Biology. 17: e1007900. PMID 33507915 DOI: 10.1371/journal.pcbi.1007900   
2021 Aguilera M, Moosavi SA, Shimazaki H. A unifying framework for mean-field theories of asymmetric kinetic Ising systems. Nature Communications. 12: 1197. PMID 33608507 DOI: 10.1038/s41467-021-20890-5   
2021 Lu J, Ding J, Liu C, Chai T. Hierarchical-Bayesian-Based Sparse Stochastic Configuration Networks for Construction of Prediction Intervals. Ieee Transactions On Neural Networks and Learning Systems. PMID 33534718 DOI: 10.1109/TNNLS.2021.3053306   
2021 Hu JF, Sun J, Lin Z, Lai JH, Zeng W, Zheng WS. APANet: Auto-Path Aggregation for Future Instance Segmentation Prediction. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 33571087 DOI: 10.1109/TPAMI.2021.3058679   
2021 Godoy BI, Vickers NA, Andersson SB. An Estimation Algorithm for General Linear Single Particle Tracking Models with Time-Varying Parameters. Molecules (Basel, Switzerland). 26. PMID 33567600 DOI: 10.3390/molecules26040886   
2021 Alsaadi FE, Wang Z, Luo Y, Alharbi NS, Alsaade FW. H∞ State Estimation for BAM Neural Networks With Binary Mode Switching and Distributed Leakage Delays Under Periodic Scheduling Protocol. Ieee Transactions On Neural Networks and Learning Systems. PMID 33587713 DOI: 10.1109/TNNLS.2021.3055942   
2021 Yu Q, Ma C, Song S, Zhang G, Dang J, Tan KC. Constructing Accurate and Efficient Deep Spiking Neural Networks With Double-Threshold and Augmented Schemes. Ieee Transactions On Neural Networks and Learning Systems. PMID 33471769 DOI: 10.1109/TNNLS.2020.3043415   
2021 Huang Y, Zhang P. Evaluation of machine learning approaches for cell-type identification from single-cell transcriptomics data. Briefings in Bioinformatics. PMID 33611343 DOI: 10.1093/bib/bbab035   
2021 Jin X, Zhou D, Jiang Q, Chu X, Yao S, Li K, Zhou W. How to Analyze the Neurodynamic Characteristics of Pulse-Coupled Neural Networks? A Theoretical Analysis and Case Study of Intersecting Cortical Model. Ieee Transactions On Cybernetics. PMID 33449895 DOI: 10.1109/TCYB.2020.3043233   
2021 Chen R. Causal Network Inference for Neural Ensemble Activity. Neuroinformatics. PMID 33393054 DOI: 10.1007/s12021-020-09505-4   
2021 Bargal SA, Zunino A, Petsiuk V, Zhang J, Saenko K, Murino V, Sclaroff S. Guided Zoom: Zooming into Network Evidence to Refine Fine-grained Model Decisions. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 33493111 DOI: 10.1109/TPAMI.2021.3054303   
2021 Hoang ND. Automatic Impervious Surface Area Detection Using Image Texture Analysis and Neural Computing Models with Advanced Optimizers. Computational Intelligence and Neuroscience. 2021: 8820116. PMID 33643406 DOI: 10.1155/2021/8820116