Sofia Fertuzinhos - Related publications

Yale University, New Haven, CT 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kita Y, Nishibe H, Wang Y, Hashikawa T, Kikuchi SS, U M, Yoshida AC, Yoshida C, Kawase T, Ishii S, Skibbe H, Shimogori T. Cellular-resolution gene expression profiling in the neonatal marmoset brain reveals dynamic species- and region-specific differences. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33903237 DOI: 10.1073/pnas.2020125118   
2021 Szu J, Wojcinski A, Jiang P, Kesari S. Impact of the Olig Family on Neurodevelopmental Disorders. Frontiers in Neuroscience. 15: 659601. PMID 33859549 DOI: 10.3389/fnins.2021.659601   
2021 Weiss FD, Calderon L, Wang YF, Georgieva R, Guo Y, Cvetesic N, Kaur M, Dharmalingam G, Krantz ID, Lenhard B, Fisher AG, Merkenschlager M. Neuronal genes deregulated in Cornelia de Lange Syndrome respond to removal and re-expression of cohesin. Nature Communications. 12: 2919. PMID 34006846 DOI: 10.1038/s41467-021-23141-9   
2021 Morson S, Yang Y, Price DJ, Pratt T. Expression of Genes in the 16p11.2 Locus during Development of the Human Fetal Cerebral Cortex. Cerebral Cortex (New York, N.Y. : 1991). PMID 33825894 DOI: 10.1093/cercor/bhab067   
2021 Crane-Smith Z, Schoenebeck J, Graham KA, Devenney PS, Rose L, Ditzell M, Anderson E, Thomson JI, Klenin N, Kurrasch DM, Lettice LA, Hill RE. A Highly Conserved Enhancer Coordinates Hypothalamic and Craniofacial Development. Frontiers in Cell and Developmental Biology. 9: 595744. PMID 33869166 DOI: 10.3389/fcell.2021.595744   
2021 Palmateer CM, Moseley SC, Ray S, Brovero SG, Arbeitman MN. Analysis of cell-type-specific chromatin modifications and gene expression in Drosophila neurons that direct reproductive behavior. Plos Genetics. 17: e1009240. PMID 33901168 DOI: 10.1371/journal.pgen.1009240   
2021 Sawyer AJ, Garand M, Chaussabel D, Feng CG. Transcriptomic Profiling Identifies Neutrophil-Specific Upregulation of Cystatin F as a Marker of Acute Inflammation in Humans. Frontiers in Immunology. 12: 634119. PMID 33868254 DOI: 10.3389/fimmu.2021.634119   
2021 Aguilar R, Bustos FJ, Nardocci G, van Zundert B, Montecino M. Epigenetic silencing of the osteoblast-lineage gene program during hippocampal maturation. Journal of Cellular Biochemistry. 122: 367-384. PMID 33135214 DOI: 10.1002/jcb.29865   
2021 Kawamura A, Katayama Y, Kakegawa W, Ino D, Nishiyama M, Yuzaki M, Nakayama KI. The autism-associated protein CHD8 is required for cerebellar development and motor function. Cell Reports. 35: 108932. PMID 33826902 DOI: 10.1016/j.celrep.2021.108932   
2021 Onur TS, Laitman A, Zhao H, Keyho R, Kim H, Wang J, Mair M, Wang H, Li L, Perez A, de Haro M, Wan YW, Allen G, Lu B, Al-Ramahi I, et al. Downregulation of glial genes involved in synaptic function mitigates Huntington's Disease pathogenesis. Elife. 10. PMID 33871358 DOI: 10.7554/eLife.64564   
2021 Johansson T, Yohannes DA, Koskela S, Partanen J, Saavalainen P. HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression. Frontiers in Immunology. 12: 629059. PMID 33717155 DOI: 10.3389/fimmu.2021.629059   
2021 Egervari G. Chromatin accessibility in neuropsychiatric disorders. Neurobiology of Learning and Memory. 181: 107438. PMID 33845131 DOI: 10.1016/j.nlm.2021.107438   
2021 Wang ZJ, Rein B, Zhong P, Williams J, Cao Q, Yang F, Zhang F, Ma K, Yan Z. Autism risk gene KMT5B deficiency in prefrontal cortex induces synaptic dysfunction and social deficits via alterations of DNA repair and gene transcription. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 34007043 DOI: 10.1038/s41386-021-01029-y   
2021 Wang J, Roeder K, Devlin B. Bayesian estimation of cell type-specific gene expression with prior derived from single-cell data. Genome Research. PMID 33837133 DOI: 10.1101/gr.268722.120   
2021 Pallos J, Jeng S, McWeeney S, Martin I. Dopamine neuron-specific LRRK2 G2019S effects on gene expression revealed by translatome profiling. Neurobiology of Disease. 105390. PMID 33984508 DOI: 10.1016/j.nbd.2021.105390   
2021 Golicz AA, Allu AD, Li W, Lohani N, Singh MB, Bhalla PL. A dynamic intron retention program regulates the expression of several hundred genes during pollen meiosis. Plant Reproduction. PMID 34019149 DOI: 10.1007/s00497-021-00411-6   
2021 Shew CJ, Carmona-Mora P, Soto DC, Mastoras M, Roberts E, Rosas J, Jagannathan D, Kaya G, O'Geene H, Dennis MY. Diverse molecular mechanisms contribute to differential expression of human duplicated genes. Molecular Biology and Evolution. PMID 34009325 DOI: 10.1093/molbev/msab131   
2021 Salem NA, Mahnke AH, Konganti K, Hillhouse AE, Miranda RC. Cell-type and fetal-sex-specific targets of prenatal alcohol exposure in developing mouse cerebral cortex. Iscience. 24: 102439. PMID 33997709 DOI: 10.1016/j.isci.2021.102439   
2021 Pokhilko A, Handel AE, Curion F, Volpato V, Whiteley ES, Bøstrand S, Newey SE, Akerman CJ, Webber C, Clark MB, Bowden R, Cader MZ. Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories. Genome Research. PMID 34011578 DOI: 10.1101/gr.273961.120   
2021 Garcia-Ruiz B, de Moura MC, Muntané G, Martorell L, Bosch E, Esteller M, J Canales-Rodríguez E, Pomarol-Clotet E, Jiménez E, Vieta E, Vilella E. methylation is associated with bipolar disorder and the isoform expression and methylation of myelin genes. Epigenomics. 13: 845-858. PMID 33942629 DOI: 10.2217/epi-2021-0006   
2021 Weiss CV, Harshman L, Inoue F, Fraser HB, Petrov DA, Ahituv N, Gokhman D. The -regulatory effects of modern human-specific variants. Elife. 10. PMID 33885362 DOI: 10.7554/eLife.63713   
2021 Ma W, Liu Y, Ma H, Ren Z, Yan J. Cis-acting: A pattern of lncRNAs for gene regulation in induced pluripotent stem cells from patients with Down syndrome determined by integrative analysis of lncRNA and mRNA profiling data. Experimental and Therapeutic Medicine. 22: 701. PMID 34007310 DOI: 10.3892/etm.2021.10133   
2021 Rahman R, Zatorski N, Hansen J, Xiong Y, van Hasselt JGC, Sobie EA, Birtwistle MR, Azeloglu EU, Iyengar R, Schlessinger A. Protein structure-based gene expression signatures. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33941686 DOI: 10.1073/pnas.2014866118   
2021 Wuelling M, Neu C, Thiesen AM, Kitanovski S, Cao Y, Lange A, Westendorf AM, Hoffmann D, Vortkamp A. Epigenetic Mechanisms Mediating Cell State Transitions in Chondrocytes. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 33534175 DOI: 10.1002/jbmr.4263   
2021 Ahn J, Hwang IS, Park MR, Hwang S, Lee K. Genomic Imprinting at the Porcine Locus and the Orthologous Locus in the Human. Genes. 12. PMID 33918057 DOI: 10.3390/genes12040541   
2021 Jia NY, Liu XZ, Zhang Z, Zhang H. Weighted Gene Co-expression Network Analysis Reveals Different Immunity but Shared Renal Pathology Between IgA Nephropathy and Lupus Nephritis. Frontiers in Genetics. 12: 634171. PMID 33854525 DOI: 10.3389/fgene.2021.634171   
2021 Kim T, Weinberg B, Wong W, Lu TK. Scalable recombinase-based gene expression cascades. Nature Communications. 12: 2711. PMID 33976199 DOI: 10.1038/s41467-021-22978-4   
2021 Fan K, Moore JE, Zhang XO, Weng Z. Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes. Nucleic Acids Research. PMID 33978759 DOI: 10.1093/nar/gkab345   
2021 Farnsworth DR, Posner M, Miller AC. Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Experimental Eye Research. 206: 108535. PMID 33705730 DOI: 10.1016/j.exer.2021.108535   
2021 Zhang J, Wei J, Yu H, Dong B. Genome-Wide Identification, Comparison, and Expression Analysis of Transcription Factors in Ascidian . International Journal of Molecular Sciences. 22. PMID 33919240 DOI: 10.3390/ijms22094317   
2021 Yi P, Xu X, Yao J, Qiu B. Effect of DNA methylation on gene transcription is associated with the distribution of methylation sites across the genome in osteoarthritis. Experimental and Therapeutic Medicine. 22: 719. PMID 34007328 DOI: 10.3892/etm.2021.10151   
2021 Yamamura Y, Furuichi K, Murakawa Y, Hirabayashi S, Yoshihara M, Sako K, Kitajima S, Toyama T, Iwata Y, Sakai N, Hosomichi K, Murphy PM, Tajima A, Okita K, Osafune K, et al. Identification of candidate PAX2-regulated genes implicated in human kidney development. Scientific Reports. 11: 9123. PMID 33907292 DOI: 10.1038/s41598-021-88743-1   
2021 Dong M, Li H, Zhang X, Tan J. Weighted Correlation Gene Network Analysis Reveals New Potential Mechanisms and Biomarkers in Non-obstructive Azoospermia. Frontiers in Genetics. 12: 617133. PMID 33868362 DOI: 10.3389/fgene.2021.617133   
2021 Scott O, Lindsay K, Erwood S, Mollica A, Roifman CM, Cohn RD, Ivakine EA. STAT1 gain-of-function heterozygous cell models reveal diverse interferon-signature gene transcriptional responses. Npj Genomic Medicine. 6: 34. PMID 33990617 DOI: 10.1038/s41525-021-00196-7   
2021 Xu J, Liu H, Lan Y, Jiang R. -Repression of Expression Affects -Mediated Gene Expression in Palate Development. Frontiers in Cell and Developmental Biology. 9: 665109. PMID 33898467 DOI: 10.3389/fcell.2021.665109   
2021 Li ZH, Guan YL, Zhang GB. Genomic Analysis of Glioblastoma Multiforme Reveals a Key Transcription Factor Signature Relevant to Prognosis and the Immune Processes. Frontiers in Oncology. 11: 657531. PMID 33987093 DOI: 10.3389/fonc.2021.657531   
2021 Gluck C, Min S, Oyelakin A, Che M, Horeth E, Song EAC, Bard J, Lamb N, Sinha S, Romano RA. A Global Vista of the Epigenomic State of the Mouse Submandibular Gland. Journal of Dental Research. 220345211012000. PMID 33978512 DOI: 10.1177/00220345211012000   
2021 Panigrahi A, O'Malley BW. Mechanisms of enhancer action: the known and the unknown. Genome Biology. 22: 108. PMID 33858480 DOI: 10.1186/s13059-021-02322-1   
2021 Simmons A, Palecek SP. Rational, unbiased selection of reference genes for pluripotent stem cell-derived cardiomyocytes. Tissue Engineering. Part C, Methods. PMID 33843289 DOI: 10.1089/ten.TEC.2021.0023   
2021 Lai J, Jiang J, Zhang P, Xi C, Wu L, Gao X, Fu Y, Zhang D, Chen Y, Huang H, Zhu Y, Hu S. Impaired blood-brain barrier in the microbiota-gut-brain axis: Potential role of bipolar susceptibility gene TRANK1. Journal of Cellular and Molecular Medicine. PMID 34014031 DOI: 10.1111/jcmm.16611   
2021 Cao R, Liu S, Zhang J, Ren X, Chen X, Cheng B, Xia J. Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma. Frontiers in Genetics. 12: 630794. PMID 33897760 DOI: 10.3389/fgene.2021.630794   
2021 Liu Z, Chen Y, Pan T, Liu J, Tian R, Sun S, Qu H, Chen E. Comprehensive Analysis of Common Different Gene Expression Signatures in the Neutrophils of Sepsis. Biomed Research International. 2021: 6655425. PMID 33959663 DOI: 10.1155/2021/6655425   
2021 Zhou J, Chen C, Liu S, Zhou W, Du J, Jiang Y, Dai J, Jin G, Ma H, Hu Z, Chen J, Shen H. Potential functional variants of KIAA genes are associated with breast cancer risk in a case control study. Annals of Translational Medicine. 9: 549. PMID 33987247 DOI: 10.21037/atm-20-6108   
2021 Ji S, Yang Z, Gozali L, Kenney T, Kocabas A, Jinsook Park C, Hynes M. Distinct expression of select and transcriptome-wide isolated 3'UTRs suggests critical roles in development and transition states. Plos One. 16: e0250669. PMID 33951080 DOI: 10.1371/journal.pone.0250669   
2021 Zhang X, Cui Y, Ding X, Liu S, Han B, Duan X, Zhang H, Sun T. Analysis of mRNA‑lncRNA and mRNA‑lncRNA-pathway co‑expression networks based on WGCNA in developing pediatric sepsis. Bioengineered. 12: 1457-1470. PMID 33949285 DOI: 10.1080/21655979.2021.1908029   
2021 Miao Z, Balzer MS, Ma Z, Liu H, Wu J, Shrestha R, Aranyi T, Kwan A, Kondo A, Pontoglio M, Kim J, Li M, Kaestner KH, Susztak K. Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets. Nature Communications. 12: 2277. PMID 33859189 DOI: 10.1038/s41467-021-22266-1   
2021 Magno L, Bunney TD, Mead E, Svensson F, Bictash MN. TREM2/PLCγ2 signalling in immune cells: function, structural insight, and potential therapeutic modulation. Molecular Neurodegeneration. 16: 22. PMID 33823896 DOI: 10.1186/s13024-021-00436-5   
2021 Xiao X, Chen Y, Peng L, Zhang T. Generation of a homozygous ALX1 knockout human embryonic stem cell line (WAe001-A-060) by a CRISPR/Cas9 system. Stem Cell Research. 53: 102309. PMID 33799274 DOI: 10.1016/j.scr.2021.102309   
2021 Baek M, Yoo E, Choi HI, An GY, Chai JC, Lee YS, Jung KH, Chai YG. The BET inhibitor attenuates the inflammatory response and cell migration in human microglial HMC3 cell line. Scientific Reports. 11: 8828. PMID 33893325 DOI: 10.1038/s41598-021-87828-1   
2021 Khan I, Khan S, Zhang Y, Zhou J. Genome-wide analysis and functional characterization of the Dof transcription factor family in rice (Oryza sativa L.). Planta. 253: 101. PMID 33856565 DOI: 10.1007/s00425-021-03627-y