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Stephen J. Smith - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Plasticity, Visual System, Zebrafish, Imaging, Synapse
Website:
http://www.stanford.edu/group/smithlab/index.html

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Micheva KD, Chang EF, Nana AL, Seeley WW, Ting JT, Cobbs C, Lein E, Smith SJ, Weinberg RJ, Madison DV. Distinctive Structural and Molecular Features of Myelinated Inhibitory Axons in Human Neocortex. Eneuro. 5. PMID 30406183 DOI: 10.1523/ENEURO.0297-18.2018  0.76
2018 Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R, Pryor D, Matelsky J, Gion T, ... ... Smith SJ, et al. A community-developed open-source computational ecosystem for big neuro data. Nature Methods. PMID 30377345 DOI: 10.1038/s41592-018-0181-1  0.4
2018 Simhal AK, Gong B, Trimmer JS, Weinberg RJ, Smith SJ, Sapiro G, Micheva KD. A Computational Synaptic Antibody Characterization Tool for Array Tomography. Frontiers in Neuroanatomy. 12: 51. PMID 30065633 DOI: 10.3389/fnana.2018.00051  0.76
2017 Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G. Probabilistic fluorescence-based synapse detection. Plos Computational Biology. 13: e1005493. PMID 28414801 DOI: 10.1371/journal.pcbi.1005493  0.76
2016 Wang GX, Smith SJ, Mourrain P. Sub-synaptic, multiplexed analysis of proteins reveals Fragile X related protein 2 is mislocalized in Fmr1 KO synapses. Elife. 5. PMID 27770568 DOI: 10.7554/eLife.20560  0.6
2016 Micheva KD, Wolman D, Mensh BD, Pax E, Buchanan J, Smith SJ, Bock DD. A large fraction of neocortical myelin ensheathes axons of local inhibitory neurons. Elife. 5. PMID 27383052 DOI: 10.7554/eLife.15784  0.76
2015 Hiu T, Farzampour Z, Paz JT, Wang EH, Badgely C, Olson A, Micheva KD, Wang G, Lemmens R, Tran KV, Nishiyama Y, Liang X, Hamilton SA, O'Rourke N, Smith SJ, et al. Enhanced phasic GABA inhibition during the repair phase of stroke: a novel therapeutic target. Brain : a Journal of Neurology. PMID 26685158 DOI: 10.1093/brain/awv360  1
2015 Burette A, Collman F, Micheva KD, Smith SJ, Weinberg RJ. Knowing a synapse when you see one. Frontiers in Neuroanatomy. 9: 100. PMID 26283929 DOI: 10.3389/fnana.2015.00100  0.76
2015 Pa?ca AM, Sloan SA, Clarke LE, Tian Y, Makinson CD, Huber N, Kim CH, Park JY, O'Rourke NA, Nguyen KD, Smith SJ, Huguenard JR, Geschwind DH, Barres BA, Pa?ca SP. Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture. Nature Methods. 12: 671-8. PMID 26005811 DOI: 10.1038/nmeth.3415  1
2015 Collman F, Buchanan J, Phend KD, Micheva KD, Weinberg RJ, Smith SJ. Mapping synapses by conjugate light-electron array tomography. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 5792-807. PMID 25855189 DOI: 10.1523/JNEUROSCI.4274-14.2015  1
2014 Weiler NC, Collman F, Vogelstein JT, Burns R, Smith SJ. Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography. Scientific Data. 1: 140046. PMID 25977797 DOI: 10.1038/sdata.2014.46  0.48
2014 Wang GX, Smith SJ, Mourrain P. Fmr1 KO and fenobam treatment differentially impact distinct synapse populations of mouse neocortex. Neuron. 84: 1273-86. PMID 25521380 DOI: 10.1016/j.neuron.2014.11.016  1
2013 Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, ... ... Smith SJ, et al. The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience. Scientific and Statistical Database Management : International Conference, Ssdbm ... : Proceedings. International Conference On Scientific and Statistical Database Management. PMID 24401992 DOI: 10.1145/2484838.2484870  0.48
2013 Chung WS, Clarke LE, Wang GX, Stafford BK, Sher A, Chakraborty C, Joung J, Foo LC, Thompson A, Chen C, Smith SJ, Barres BA. Astrocytes mediate synapse elimination through MEGF10 and MERTK pathways. Nature. 504: 394-400. PMID 24270812 DOI: 10.1038/nature12776  1
2013 Yu X, Wang G, Gilmore A, Yee AX, Li X, Xu T, Smith SJ, Chen L, Zuo Y. Accelerated experience-dependent pruning of cortical synapses in ephrin-A2 knockout mice. Neuron. 80: 64-71. PMID 24094103 DOI: 10.1016/j.neuron.2013.07.014  1
2012 Wang G, Smith SJ. Sub-diffraction limit localization of proteins in volumetric space using Bayesian restoration of fluorescence images from ultrathin specimens. Plos Computational Biology. 8: e1002671. PMID 22956902 DOI: 10.1371/journal.pcbi.1002671  1
2012 Allen NJ, Bennett ML, Foo LC, Wang GX, Chakraborty C, Smith SJ, Barres BA. Astrocyte glypicans 4 and 6 promote formation of excitatory synapses via GluA1 AMPA receptors. Nature. 486: 410-4. PMID 22722203 DOI: 10.1038/nature11059  1
2012 O'Rourke NA, Weiler NC, Micheva KD, Smith SJ. Deep molecular diversity of mammalian synapses: why it matters and how to measure it. Nature Reviews. Neuroscience. 13: 365-79. PMID 22573027 DOI: 10.1038/nrn3170  1
2012 Tapia JC, Kasthuri N, Hayworth KJ, Schalek R, Lichtman JW, Smith SJ, Buchanan J. High-contrast en bloc staining of neuronal tissue for field emission scanning electron microscopy. Nature Protocols. 7: 193-206. PMID 22240582 DOI: 10.1038/nprot.2011.439  1
2012 Saatchi S, Azuma J, Wanchoo N, Smith SJ, Yock PG, Taylor CA, Tsao PS. Three-dimensional microstructural changes in murine abdominal aortic aneurysms quantified using immunofluorescent array tomography. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 60: 97-109. PMID 22140132 DOI: 10.1369/0022155411433066  1
2011 Lee HY, Ge WP, Huang W, He Y, Wang GX, Rowson-Baldwin A, Smith SJ, Jan YN, Jan LY. Bidirectional regulation of dendritic voltage-gated potassium channels by the fragile X mental retardation protein. Neuron. 72: 630-42. PMID 22099464 DOI: 10.1016/j.neuron.2011.09.033  1
2011 Kleinfeld D, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee WC, Meyer HS, Micheva KD, Oberlaender M, Prohaska S, Reid RC, ... Smith SJ, et al. Large-scale automated histology in the pursuit of connectomes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 16125-38. PMID 22072665 DOI: 10.1523/JNEUROSCI.4077-11.2011  1
2011 Robles E, Smith SJ, Baier H. Characterization of genetically targeted neuron types in the zebrafish optic tectum. Frontiers in Neural Circuits. 5: 1. PMID 21390291 DOI: 10.3389/fncir.2011.00001  1
2010 Micheva KD, Busse B, Weiler NC, O'Rourke N, Smith SJ. Single-synapse analysis of a diverse synapse population: proteomic imaging methods and markers. Neuron. 68: 639-53. PMID 21092855 DOI: 10.1016/j.neuron.2010.09.024  1
2010 Micheva KD, O'Rourke N, Busse B, Smith SJ. Array tomography: high-resolution three-dimensional immunofluorescence. Cold Spring Harbor Protocols. 2010: pdb.top89. PMID 21041404 DOI: 10.1101/pdb.top89  1
2010 Micheva KD, O'Rourke N, Busse B, Smith SJ. Array tomography: semiautomated image alignment. Cold Spring Harbor Protocols. 2010: pdb.prot5527. PMID 21041400 DOI: 10.1101/pdb.prot5527  1
2010 Micheva KD, O'Rourke N, Busse B, Smith SJ. Array tomography: imaging stained arrays. Cold Spring Harbor Protocols. 2010: pdb.prot5526. PMID 21041399 DOI: 10.1101/pdb.prot5526  1
2010 Micheva KD, O'Rourke N, Busse B, Smith SJ. Array tomography: immunostaining and antibody elution. Cold Spring Harbor Protocols. 2010: pdb.prot5525. PMID 21041398 DOI: 10.1101/pdb.prot5525  1
2010 Micheva KD, O'Rourke N, Busse B, Smith SJ. Array tomography: production of arrays. Cold Spring Harbor Protocols. 2010: pdb.prot5524. PMID 21041397 DOI: 10.1101/pdb.prot5524  1
2010 Micheva KD, O'Rourke N, Busse B, Smith SJ. Array tomography: rodent brain fixation and embedding. Cold Spring Harbor Protocols. 2010: pdb.prot5523. PMID 21041396 DOI: 10.1101/pdb.prot5523  1
2010 Appelbaum L, Wang G, Yokogawa T, Skariah GM, Smith SJ, Mourrain P, Mignot E. Circadian and homeostatic regulation of structural synaptic plasticity in hypocretin neurons. Neuron. 68: 87-98. PMID 20920793 DOI: 10.1016/j.neuron.2010.09.006  1
2010 Li L, Tasic B, Micheva KD, Ivanov VM, Spletter ML, Smith SJ, Luo L. Visualizing the distribution of synapses from individual neurons in the mouse brain. Plos One. 5: e11503. PMID 20634890 DOI: 10.1371/journal.pone.0011503  1
2009 Appelbaum L, Wang GX, Maro GS, Mori R, Tovin A, Marin W, Yokogawa T, Kawakami K, Smith SJ, Gothilf Y, Mignot E, Mourrain P. Sleep-wake regulation and hypocretin-melatonin interaction in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 106: 21942-7. PMID 19966231 DOI: 10.1073/pnas.906637106  1
2009 Datwani A, McConnell MJ, Kanold PO, Micheva KD, Busse B, Shamloo M, Smith SJ, Shatz CJ. Classical MHCI molecules regulate retinogeniculate refinement and limit ocular dominance plasticity. Neuron. 64: 463-70. PMID 19945389 DOI: 10.1016/j.neuron.2009.10.015  1
2009 Isacoff E, Smith SJ. New technologies. Current Opinion in Neurobiology. 19: 511-2. PMID 19896828 DOI: 10.1016/j.conb.2009.10.012  1
2009 Eroglu C, Allen NJ, Susman MW, O'Rourke NA, Park CY, Ozkan E, Chakraborty C, Mulinyawe SB, Annis DS, Huberman AD, Green EM, Lawler J, Dolmetsch R, Garcia KC, Smith SJ, et al. Gabapentin receptor alpha2delta-1 is a neuronal thrombospondin receptor responsible for excitatory CNS synaptogenesis. Cell. 139: 380-92. PMID 19818485 DOI: 10.1016/j.cell.2009.09.025  1
2009 Koffie RM, Meyer-Luehmann M, Hashimoto T, Adams KW, Mielke ML, Garcia-Alloza M, Micheva KD, Smith SJ, Kim ML, Lee VM, Hyman BT, Spires-Jones TL. Oligomeric amyloid beta associates with postsynaptic densities and correlates with excitatory synapse loss near senile plaques. Proceedings of the National Academy of Sciences of the United States of America. 106: 4012-7. PMID 19228947 DOI: 10.1073/pnas.0811698106  1
2008 Lichtman JW, Smith SJ. Seeing circuits assemble. Neuron. 60: 441-8. PMID 18995818 DOI: 10.1016/j.neuron.2008.10.040  1
2007 Stevens B, Allen NJ, Vazquez LE, Howell GR, Christopherson KS, Nouri N, Micheva KD, Mehalow AK, Huberman AD, Stafford B, Sher A, Litke AM, Lambris JD, Smith SJ, John SW, et al. The classical complement cascade mediates CNS synapse elimination. Cell. 131: 1164-78. PMID 18083105 DOI: 10.1016/j.cell.2007.10.036  1
2007 Smith SJ. Circuit reconstruction tools today. Current Opinion in Neurobiology. 17: 601-8. PMID 18082394 DOI: 10.1016/j.conb.2007.11.004  1
2007 Micheva KD, Smith SJ. Array tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits. Neuron. 55: 25-36. PMID 17610815 DOI: 10.1016/j.neuron.2007.06.014  1
2007 Levi O, Lee TT, Lee MM, Smith SJ, Harris JS. Integrated semiconductor optical sensors for cellular and neural imaging. Applied Optics. 46: 1881-9. PMID 17356634 DOI: 10.1364/AO.46.001881  1
2006 Lee TT, Levi O, Cang J, Kaneko M, Stryker MP, Smith SJ, Shenoy KV, Harris JS. Integrated semiconductor optical sensors for chronic, minimally-invasive imaging of brain function. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 1025-8. PMID 17946016 DOI: 10.1109/IEMBS.2006.260041  1
2006 Micheva KD, Taylor CP, Smith SJ. Pregabalin reduces the release of synaptic vesicles from cultured hippocampal neurons. Molecular Pharmacology. 70: 467-76. PMID 16641316 DOI: 10.1124/mol.106.023309  1
2006 Meyer MP, Smith SJ. Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 3604-14. PMID 16571769 DOI: 10.1523/JNEUROSCI.0223-06.2006  1
2005 Micheva KD, Smith SJ. Strong effects of subphysiological temperature on the function and plasticity of mammalian presynaptic terminals. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 7481-8. PMID 16107635 DOI: 10.1523/JNEUROSCI.1801-05.2005  1
2005 Okumoto S, Looger LL, Micheva KD, Reimer RJ, Smith SJ, Frommer WB. Detection of glutamate release from neurons by genetically encoded surface-displayed FRET nanosensors. Proceedings of the National Academy of Sciences of the United States of America. 102: 8740-5. PMID 15939876 DOI: 10.1073/pnas.0503274102  1
2005 Hua JY, Smear MC, Baier H, Smith SJ. Regulation of axon growth in vivo by activity-based competition. Nature. 434: 1022-6. PMID 15846347 DOI: 10.1038/nature03409  1
2005 Niell CM, Smith SJ. Functional imaging reveals rapid development of visual response properties in the zebrafish tectum. Neuron. 45: 941-51. PMID 15797554 DOI: 10.1016/j.neuron.2005.01.047  1
2005 Meyer MP, Trimmer JS, Gilthorpe JD, Smith SJ. Characterization of zebrafish PSD-95 gene family members. Journal of Neurobiology. 63: 91-105. PMID 15660367 DOI: 10.1002/neu.20118  1
2004 Jontes JD, Emond MR, Smith SJ. In vivo trafficking and targeting of N-cadherin to nascent presynaptic terminals. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 9027-34. PMID 15483121 DOI: 10.1523/JNEUROSCI.5399-04.2004  1
2004 Hua JY, Smith SJ. Neural activity and the dynamics of central nervous system development. Nature Neuroscience. 7: 327-32. PMID 15048120 DOI: 10.1038/nn1218  1
2004 Niell CM, Smith SJ. Live optical imaging of nervous system development. Annual Review of Physiology. 66: 771-98. PMID 14977421 DOI: 10.1146/annurev.physiol.66.082602.095217  1
2004 Niell CM, Meyer MP, Smith SJ. In vivo imaging of synapse formation on a growing dendritic arbor. Nature Neuroscience. 7: 254-60. PMID 14758365 DOI: 10.1038/nn1191  1
2003 Thrush E, Levi O, Ha W, Wang K, Smith SJ, Harris JS. Integrated bio-fluorescence sensor. Journal of Chromatography. A. 1013: 103-10. PMID 14604112 DOI: 10.1016/S0021-9673(03)01361-X  1
2003 Waters J, Smith SJ. Mitochondria and release at hippocampal synapses. PflüGers Archiv : European Journal of Physiology. 447: 363-70. PMID 14556074 DOI: 10.1007/s00424-003-1182-0  1
2003 Micheva KD, Buchanan J, Holz RW, Smith SJ. Retrograde regulation of synaptic vesicle endocytosis and recycling. Nature Neuroscience. 6: 925-32. PMID 12910242 DOI: 10.1038/nn1114  1
2002 Waters J, Smith SJ. Vesicle pool partitioning influences presynaptic diversity and weighting in rat hippocampal synapses. The Journal of Physiology. 541: 811-23. PMID 12068042 DOI: 10.1113/jphysiol.2001.013485  1
2002 Ahmari SE, Smith SJ. Knowing a nascent synapse when you see it. Neuron. 34: 333-6. PMID 11988164  0.88
2002 Hopf FW, Waters J, Mehta S, Smith SJ. Stability and plasticity of developing synapses in hippocampal neuronal cultures. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 775-81. PMID 11826107  1
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