| Year |
Citation |
Score |
| 2023 |
Pourciau C, Yakhnin H, Pannuri A, Gorelik MG, Lai Y-J, Romeo T, Babitzke P. CsrA coordinates the expression of ribosome hibernation and anti-σ factor proteins. Mbio. e0258523. PMID 37943032 DOI: 10.1128/mbio.02585-23 |
0.403 |
|
| 2023 |
Sieg JP, Jolley EA, Huot MJ, Babitzke P, Bevilacqua PC. In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells. Nucleic Acids Research. PMID 37855684 DOI: 10.1093/nar/gkad807 |
0.421 |
|
| 2023 |
Nava-Galeana J, Yakhnin H, Babitzke P, Bustamante VH. CsrA Positively and Directly Regulates the Expression of the , , and Genes Required for the Luminal Replication of Typhimurium. Microbiology Spectrum. e0151623. PMID 37358421 DOI: 10.1128/spectrum.01516-23 |
0.374 |
|
| 2023 |
Yakhnin AV, Bubunenko M, Mandell ZF, Lubkowska L, Husher S, Babitzke P, Kashlev M. Robust regulation of transcription pausing in by the ubiquitous elongation factor NusG. Proceedings of the National Academy of Sciences of the United States of America. 120: e2221114120. PMID 37276387 DOI: 10.1073/pnas.2221114120 |
0.473 |
|
| 2023 |
Jolley EA, Yakhnin H, Tack DC, Babitzke P, Bevilacqua PC. Transcriptome-wide probing reveals RNA thermometers that regulate translation of glycerol permease genes in . Rna (New York, N.Y.). PMID 37217261 DOI: 10.1261/rna.079652.123 |
0.424 |
|
| 2023 |
Silva-Rohwer AR, Held K, Yakhnin H, Babitzke P, Vadyvaloo V. CsrA-Mediated Translational Activation of the mRNA Enhances HmsD-Dependent C-di-GMP-Enabled Biofilm Production in Yersinia pestis. Journal of Bacteriology. e0010523. PMID 37191545 DOI: 10.1128/jb.00105-23 |
0.406 |
|
| 2023 |
Vishwakarma RK, Qayyum MZ, Babitzke P, Murakami KS. Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 120: e2218516120. PMID 36745813 DOI: 10.1073/pnas.2218516120 |
0.479 |
|
| 2022 |
Mandell ZF, Vishwakarma RK, Yakhnin H, Murakami KS, Kashlev M, Babitzke P. Comprehensive transcription terminator atlas for Bacillus subtilis. Nature Microbiology. PMID 36192538 DOI: 10.1038/s41564-022-01240-7 |
0.352 |
|
| 2022 |
Mandell ZF, Zemba D, Babitzke P. Factor-stimulated intrinsic termination: getting by with a little help from some friends. Transcription. 1-13. PMID 36154805 DOI: 10.1080/21541264.2022.2127602 |
0.32 |
|
| 2022 |
Yakhnin H, Babitzke P. Toeprint Assays for Detecting RNA Structure and Protein-RNA Interactions. Methods in Molecular Biology (Clifton, N.J.). 2516: 305-316. PMID 35922633 DOI: 10.1007/978-1-0716-2413-5_16 |
0.482 |
|
| 2022 |
Takada H, Mandell ZF, Yakhnin H, Glazyrina A, Chiba S, Kurata T, Wu KJY, Tresco BIC, Myers AG, Aktinson GC, Babitzke P, Hauryliuk V. Expression of Bacillus subtilis ABCF antibiotic resistance factor VmlR is regulated by RNA polymerase pausing, transcription attenuation, translation attenuation and (p)ppGpp. Nucleic Acids Research. PMID 35699226 DOI: 10.1093/nar/gkac497 |
0.411 |
|
| 2022 |
Chhabra S, Mandell ZF, Liu B, Babitzke P, Bechhofer DH. Analysis of mRNA Decay Intermediates in Bacillus subtilis 3' Exoribonuclease and RNA Helicase Mutant Strains. Mbio. e0040022. PMID 35311531 DOI: 10.1128/mbio.00400-22 |
0.429 |
|
| 2022 |
Jayasinghe OT, Mandell ZF, Yakhnin AV, Kashlev M, Babitzke P. Transcriptome-Wide Effects of NusA on RNA Polymerase Pausing in Bacillus subtilis. Journal of Bacteriology. e0053421. PMID 35258320 DOI: 10.1128/jb.00534-21 |
0.376 |
|
| 2021 |
Lai YJ, Yakhnin H, Pannuri A, Pourciau C, Babitzke P, Romeo T. CsrA Regulation via Binding to the Base-pairing Small RNA Spot 42. Molecular Microbiology. PMID 34107125 DOI: 10.1111/mmi.14769 |
0.602 |
|
| 2021 |
Pérez-Morales D, Nava-Galeana J, Rosales-Reyes R, Teehan P, Yakhnin H, Melchy-Pérez EI, Rosenstein Y, De la Cruz MA, Babitzke P, Bustamante VH. An incoherent feedforward loop formed by SirA/BarA, HilE and HilD is involved in controlling the growth cost of virulence factor expression by Salmonella Typhimurium. Plos Pathogens. 17: e1009630. PMID 34048498 DOI: 10.1371/journal.ppat.1009630 |
0.433 |
|
| 2021 |
Mandell ZF, Oshiro RT, Yakhnin AV, Vishwakarma R, Kashlev M, Kearns DB, Babitzke P. NusG is an intrinsic transcription termination factor that stimulates motility and coordinates gene expression with NusA. Elife. 10. PMID 33835023 DOI: 10.7554/eLife.61880 |
0.356 |
|
| 2020 |
Pourciau C, Lai YJ, Gorelik M, Babitzke P, Romeo T. Diverse Mechanisms and Circuitry for Global Regulation by the RNA-Binding Protein CsrA. Frontiers in Microbiology. 11: 601352. PMID 33193284 DOI: 10.3389/fmicb.2020.601352 |
0.57 |
|
| 2020 |
Yakhnin AV, Kashlev M, Babitzke P. NusG-dependent RNA polymerase pausing is a frequent function of this universally conserved transcription elongation factor. Critical Reviews in Biochemistry and Molecular Biology. 55: 716-728. PMID 33003953 DOI: 10.1080/10409238.2020.1828261 |
0.512 |
|
| 2020 |
Renda A, Poly S, Lai YJ, Pannuri A, Yakhnin H, Potts AH, Bevilacqua PC, Romeo T, Babitzke P. CsrA-Mediated Translational Activation of Expression in Escherichia coli. Mbio. 11. PMID 32934077 DOI: 10.1128/Mbio.00849-20 |
0.631 |
|
| 2020 |
Yakhnin AV, FitzGerald PC, McIntosh C, Yakhnin H, Kireeva M, Turek-Herman J, Mandell ZF, Kashlev M, Babitzke P. NusG controls transcription pausing and RNA polymerase translocation throughout the genome. Proceedings of the National Academy of Sciences of the United States of America. 117: 21628-21636. PMID 32817529 DOI: 10.1073/Pnas.2006873117 |
0.571 |
|
| 2020 |
Ritchey LE, Tack DC, Yakhnin H, Jolley EA, Assmann SM, Bevilacqua PC, Babitzke P. Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis. Rna (New York, N.Y.). PMID 32611709 DOI: 10.1261/Rna.075986.120 |
0.552 |
|
| 2019 |
Yakhnin H, Yakhnin AV, Mouery BL, Mandell ZF, Karbasiafshar C, Kashlev M, Babitzke P. NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis. Mbio. 10. PMID 31719185 DOI: 10.1128/Mbio.02665-19 |
0.493 |
|
| 2019 |
Pourciau C, Pannuri A, Potts A, Yakhnin H, Babitzke P, Romeo T. Regulation of Iron Storage by CsrA Supports Exponential Growth of Escherichia coli. Mbio. 10. PMID 31387901 DOI: 10.1128/Mbio.01034-19 |
0.384 |
|
| 2019 |
Babitzke P, Lai YJ, Renda A, Romeo T. Posttranscription Initiation Control of Gene Expression Mediated by Bacterial RNA-Binding Proteins. Annual Review of Microbiology. PMID 31100987 DOI: 10.1146/Annurev-Micro-020518-115907 |
0.633 |
|
| 2018 |
Mitchell D, Renda AJ, Douds CA, Babitzke P, Assmann SM, Bevilacqua PC. In vivo RNA structural probing of uracil and guanine base pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC). Rna (New York, N.Y.). PMID 30341176 DOI: 10.1261/Rna.067868.118 |
0.495 |
|
| 2018 |
Potts AH, Leng Y, Babitzke P, Romeo T. Examination of Csr regulatory circuitry using epistasis analysis with RNA-seq (Epi-seq) confirms that CsrD affects gene expression via CsrA, CsrB and CsrC. Scientific Reports. 8: 5373. PMID 29599472 DOI: 10.1038/S41598-018-23713-8 |
0.618 |
|
| 2018 |
Romeo T, Babitzke P. Global Regulation by CsrA and Its RNA Antagonists. Microbiology Spectrum. 6. PMID 29573256 DOI: 10.1128/Microbiolspec.Rwr-0009-2017 |
0.665 |
|
| 2017 |
Potts AH, Vakulskas CA, Pannuri A, Yakhnin H, Babitzke P, Romeo T. Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics. Nature Communications. 8: 1596. PMID 29150605 DOI: 10.1038/S41467-017-01613-1 |
0.643 |
|
| 2017 |
Mitchell D, Ritchey LE, Park H, Babitzke P, Assmann SM, Bevilacqua PC. Glyoxals as In Vivo RNA Structural Probes of Guanine Base Pairing. Rna (New York, N.Y.). PMID 29030489 DOI: 10.1261/Rna.064014.117 |
0.456 |
|
| 2017 |
Yakhnin H, Aichele R, Ades SE, Romeo T, Babitzke P. Circuitry linking the global Csr and σ(E)-dependent cell envelope stress response systems. Journal of Bacteriology. PMID 28924029 DOI: 10.1128/Jb.00484-17 |
0.503 |
|
| 2017 |
Park H, McGibbon LC, Potts AH, Yakhnin H, Romeo T, Babitzke P. Translational Repression of the RpoS Antiadapter IraD by CsrA Is Mediated via Translational Coupling to a Short Upstream Open Reading Frame. Mbio. 8. PMID 28851853 DOI: 10.1128/Mbio.01355-17 |
0.629 |
|
| 2017 |
Mondal S, Yakhnin AV, Babitzke P. Modular organization of the NusA- and NusG-stimulated RNA polymerase pause signal that participates in the Bacillus subtilis trp operon attenuation mechanism. Journal of Bacteriology. PMID 28507243 DOI: 10.1128/Jb.00223-17 |
0.591 |
|
| 2017 |
Babitzke P, O'Connor M. Noncanonical Translation Initiation Comes of Age. Journal of Bacteriology. 199. PMID 28484051 DOI: 10.1128/Jb.00295-17 |
0.389 |
|
| 2016 |
Bingaman JL, Frankel EA, Hull CM, Leamy KA, Messina KJ, Mitchell D, Park H, Ritchey LE, Babitzke P, Bevilacqua PC. Eliminating blurry bands in gels with a simple cost-effective repair to the gel cassette. Rna (New York, N.Y.). 22: 1929-1930. PMID 27852929 DOI: 10.1261/Rna.059303.116 |
0.334 |
|
| 2016 |
Mondal S, Yakhnin AV, Sebastian A, Albert I, Babitzke P. NusA-dependent transcription termination prevents misregulation of global gene expression. Nature Microbiology. 1: 15007. PMID 27571753 DOI: 10.1038/Nmicrobiol.2015.7 |
0.516 |
|
| 2016 |
Pannuri A, Vakulskas CA, Zere T, McGibbon LC, Edwards AN, Georgellis D, Babitzke P, Romeo T. Circuitry linking the catabolite repression and Csr global regulatory systems of Escherichia coli. Journal of Bacteriology. PMID 27551019 DOI: 10.1128/Jb.00454-16 |
0.57 |
|
| 2016 |
Mukherjee S, Oshiro RT, Yakhnin H, Babitzke P, Kearns DB. FliW antagonizes CsrA RNA binding by a noncompetitive allosteric mechanism. Proceedings of the National Academy of Sciences of the United States of America. PMID 27516547 DOI: 10.1073/Pnas.1602455113 |
0.629 |
|
| 2016 |
Vakulskas CA, Leng Y, Abe H, Amaki T, Okayama A, Babitzke P, Suzuki K, Romeo T. Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins. Nucleic Acids Research. PMID 27235416 DOI: 10.1093/Nar/Gkw484 |
0.531 |
|
| 2016 |
Chowdhury N, Kwan BW, McGibbon LC, Babitzke P, Wood TK. Toxin MqsR cleaves single-stranded mRNA with various 5' ends. Microbiologyopen. PMID 26846703 DOI: 10.1002/mbo3.335 |
0.381 |
|
| 2016 |
Yakhnin AV, Murakami KS, Babitzke P. NusG Is a Sequence-specific RNA Polymerase Pause Factor That Binds to the Non-template DNA within the Paused Transcription Bubble. The Journal of Biological Chemistry. 291: 5299-308. PMID 26742846 DOI: 10.1074/Jbc.M115.704189 |
0.59 |
|
| 2016 |
Mondal S, Yakhnin AV, Sebastian A, Albert I, Babitzke P. Erratum: Corrigendum: NusA-dependent transcription termination prevents misregulation of global gene expression Nature Microbiology. 1. DOI: 10.1038/Nmicrobiol.2016.110 |
0.521 |
|
| 2015 |
Leng Y, Vakulskas CA, Zere TR, Pickering BS, Watnick PI, Babitzke P, Romeo T. Regulation of CsrB/C sRNA decay by EIIA(Glc) of the phosphoenolpyruvate: carbohydrate phosphotransferase system. Molecular Microbiology. PMID 26507976 DOI: 10.1111/Mmi.13259 |
0.558 |
|
| 2015 |
Park H, Yakhnin H, Connolly M, Romeo T, Babitzke P. CsrA participates in a PNPase autoregulatory mechanism by selectively repressing translation of pnp transcripts that have been previously processed by RNase III and PNPase. Journal of Bacteriology. PMID 26438818 DOI: 10.1128/Jb.00721-15 |
0.65 |
|
| 2015 |
Yakhnin H, Yakhnin AV, Babitzke P. Ribosomal protein L10(L12)4 autoregulates expression of the Bacillus subtilis rplJL operon by a transcription attenuation mechanism Nucleic Acids Research. 43: 7032-7043. PMID 26101249 DOI: 10.1093/Nar/Gkv628 |
0.484 |
|
| 2015 |
Abbott ZD, Yakhnin H, Babitzke P, Swanson MS. csrR, a Paralog and Direct Target of CsrA, Promotes Legionella pneumophila Resilience in Water. Mbio. 6: e00595. PMID 26060275 DOI: 10.1128/Mbio.00595-15 |
0.509 |
|
| 2015 |
Vakulskas CA, Potts AH, Babitzke P, Ahmer BM, Romeo T. Regulation of bacterial virulence by Csr (Rsm) systems. Microbiology and Molecular Biology Reviews : Mmbr. 79: 193-224. PMID 25833324 DOI: 10.1128/Mmbr.00052-14 |
0.535 |
|
| 2014 |
Vakulskas CA, Pannuri A, Cortés-Selva D, Zere TR, Ahmer BM, Babitzke P, Romeo T. Global effects of the DEAD-box RNA helicase DeaD (CsdA) on gene expression over a broad range of temperatures. Molecular Microbiology. 92: 945-58. PMID 24708042 DOI: 10.1111/Mmi.12606 |
0.604 |
|
| 2014 |
Yakhnin AV, Babitzke P. NusG/Spt5: Are there common functions of this ubiquitous transcription elongation factor? Current Opinion in Microbiology. 18: 68-71. PMID 24632072 DOI: 10.1016/J.Mib.2014.02.005 |
0.548 |
|
| 2013 |
Yakhnin AV, Baker CS, Vakulskas CA, Yakhnin H, Berezin I, Romeo T, Babitzke P. CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage. Molecular Microbiology. 87: 851-66. PMID 23305111 DOI: 10.1111/Mmi.12136 |
0.575 |
|
| 2013 |
Patterson-Fortin LM, Vakulskas CA, Yakhnin H, Babitzke P, Romeo T. Dual posttranscriptional regulation via a cofactor-responsive mRNA leader. Journal of Molecular Biology. 425: 3662-77. PMID 23274138 DOI: 10.1016/J.Jmb.2012.12.010 |
0.632 |
|
| 2013 |
Mukherjee S, Babitzke P, Kearns DB. FliW and FliS function independently to control cytoplasmic flagellin levels in Bacillus subtilis. Journal of Bacteriology. 195: 297-306. PMID 23144244 DOI: 10.1128/Jb.01654-12 |
0.501 |
|
| 2013 |
Romeo T, Vakulskas CA, Babitzke P. Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems. Environmental Microbiology. 15: 313-24. PMID 22672726 DOI: 10.1111/J.1462-2920.2012.02794.X |
0.613 |
|
| 2012 |
Yakhnin AV, Yakhnin H, Babitzke P. Gel mobility shift assays to detect protein-RNA interactions Methods in Molecular Biology. 905: 201-211. PMID 22736005 DOI: 10.1007/978-1-61779-949-5_12 |
0.505 |
|
| 2012 |
Pannuri A, Yakhnin H, Vakulskas CA, Edwards AN, Babitzke P, Romeo T. Translational repression of NhaR, a novel pathway for multi-tier regulation of biofilm circuitry by CsrA. Journal of Bacteriology. 194: 79-89. PMID 22037401 DOI: 10.1128/Jb.06209-11 |
0.602 |
|
| 2011 |
Yakhnin H, Baker CS, Berezin I, Evangelista MA, Rassin A, Romeo T, Babitzke P. CsrA represses translation of sdiA, which encodes the N-acylhomoserine-L-lactone receptor of Escherichia coli, by binding exclusively within the coding region of sdiA mRNA. Journal of Bacteriology. 193: 6162-70. PMID 21908661 DOI: 10.1128/Jb.05975-11 |
0.62 |
|
| 2011 |
Mukherjee S, Yakhnin H, Kysela D, Sokoloski J, Babitzke P, Kearns DB. CsrA-FliW interaction governs flagellin homeostasis and a checkpoint on flagellar morphogenesis in Bacillus subtilis. Molecular Microbiology. 82: 447-61. PMID 21895793 DOI: 10.1111/J.1365-2958.2011.07822.X |
0.553 |
|
| 2011 |
Yakhnin H, Yakhnin AV, Baker CS, Sineva E, Berezin I, Romeo T, Babitzke P. Complex regulation of the global regulatory gene csrA: CsrA-mediated translational repression, transcription from five promoters by Eσ⁷⁰ and Eσ(S), and indirect transcriptional activation by CsrA. Molecular Microbiology. 81: 689-704. PMID 21696456 DOI: 10.1111/J.1365-2958.2011.07723.X |
0.568 |
|
| 2011 |
MartÃnez LC, Yakhnin H, Camacho MI, Georgellis D, Babitzke P, Puente JL, Bustamante VH. Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI-1 and SPI-2 virulence regulons through HilD. Molecular Microbiology. 80: 1637-56. PMID 21518393 DOI: 10.1111/J.1365-2958.2011.07674.X |
0.592 |
|
| 2011 |
Edwards AN, Patterson-Fortin LM, Vakulskas CA, Mercante JW, Potrykus K, Vinella D, Camacho MI, Fields JA, Thompson SA, Georgellis D, Cashel M, Babitzke P, Romeo T. Circuitry linking the Csr and stringent response global regulatory systems. Molecular Microbiology. 80: 1561-80. PMID 21488981 DOI: 10.1111/J.1365-2958.2011.07663.X |
0.53 |
|
| 2010 |
Yakhnin AV, Babitzke P. Mechanism of NusG-stimulated pausing, hairpin-dependent pause site selection and intrinsic termination at overlapping pause and termination sites in the Bacillus subtilis trp leader Molecular Microbiology. 76: 690-705. PMID 20384694 DOI: 10.1111/J.1365-2958.2010.07126.X |
0.508 |
|
| 2009 |
Perez N, Treviño J, Liu Z, Ho SCM, Babitzke P, Sumby P. A genome-wide analysis of small regulatory RNAs in the human pathogen group a Streptococcus Plos One. 4. PMID 19888332 DOI: 10.1371/Journal.Pone.0007668 |
0.414 |
|
| 2009 |
Mercante J, Edwards AN, Dubey AK, Babitzke P, Romeo T. Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression. Journal of Molecular Biology. 392: 511-28. PMID 19619561 DOI: 10.1016/J.Jmb.2009.07.034 |
0.573 |
|
| 2009 |
Babitzke P, Baker CS, Romeo T. Regulation of translation initiation by RNA binding proteins. Annual Review of Microbiology. 63: 27-44. PMID 19385727 DOI: 10.1146/Annurev.Micro.091208.073514 |
0.607 |
|
| 2009 |
McGraw AP, Mokdad A, Major F, Bevilacqua PC, Babitzke P. Molecular basis of TRAP-5'SL RNA interaction in the Bacillus subtilis trp operon transcription attenuation mechanism. Rna (New York, N.Y.). 15: 55-66. PMID 19033375 DOI: 10.1261/Rna.1314409 |
0.526 |
|
| 2008 |
Yakhnin AV, Yakhnin H, Babitzke P. Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader Proceedings of the National Academy of Sciences of the United States of America. 105: 16131-16136. PMID 18852477 DOI: 10.1073/Pnas.0808842105 |
0.546 |
|
| 2007 |
McGraw AP, Bevilacqua PC, Babitzke P. TRAP-5' stem loop interaction increases the efficiency of transcription termination in the Bacillus subtilis trpEDCFBA operon leader region. Rna (New York, N.Y.). 13: 2020-33. PMID 17881743 DOI: 10.1261/Rna.719507 |
0.546 |
|
| 2007 |
Lapouge K, Sineva E, Lindell M, Starke K, Baker CS, Babitzke P, Haas D. Mechanism of hcnA mRNA recognition in the Gac/Rsm signal transduction pathway of Pseudomonas fluorescens Molecular Microbiology. 66: 341-356. PMID 17850261 DOI: 10.1111/J.1365-2958.2007.05909.X |
0.584 |
|
| 2007 |
Yakhnin H, Pandit P, Petty TJ, Baker CS, Romeo T, Babitzke P. CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding. Molecular Microbiology. 64: 1605-20. PMID 17555441 DOI: 10.1111/J.1365-2958.2007.05765.X |
0.597 |
|
| 2007 |
Baker CS, Eöry LA, Yakhnin H, Mercante J, Romeo T, Babitzke P. CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence. Journal of Bacteriology. 189: 5472-81. PMID 17526692 DOI: 10.1128/Jb.00529-07 |
0.598 |
|
| 2007 |
Babitzke P, Romeo T. CsrB sRNA family: sequestration of RNA-binding regulatory proteins. Current Opinion in Microbiology. 10: 156-63. PMID 17383221 DOI: 10.1016/J.Mib.2007.03.007 |
0.605 |
|
| 2007 |
Yakhnin H, Yakhnin AV, Babitzke P. Translation control of trpG from transcripts originating from the folate operon promoter of Bacillus subtilis is influenced by translation-mediated displacement of bound TRAP, while translation control of transcripts originating from a newly identified trpG promoter is not Journal of Bacteriology. 189: 872-879. PMID 17114263 DOI: 10.1128/Jb.01398-06 |
0.549 |
|
| 2006 |
Yakhnin AV, Yakhnin H, Babitzke P. RNA Polymerase Pausing Regulates Translation Initiation by Providing Additional Time for TRAP-RNA Interaction Molecular Cell. 24: 547-557. PMID 17114058 DOI: 10.1016/J.Molcel.2006.09.018 |
0.641 |
|
| 2006 |
Suzuki K, Babitzke P, Kushner SR, Romeo T. Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes & Development. 20: 2605-17. PMID 16980588 DOI: 10.1101/Gad.1461606 |
0.738 |
|
| 2006 |
Mercante J, Suzuki K, Cheng X, Babitzke P, Romeo T. Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance. The Journal of Biological Chemistry. 281: 31832-42. PMID 16923806 DOI: 10.1074/Jbc.M606057200 |
0.597 |
|
| 2006 |
Yakhnin H, Yakhnin AV, Babitzke P. The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding Molecular Microbiology. 61: 1252-1266. PMID 16879415 DOI: 10.1111/J.1365-2958.2006.05278.X |
0.615 |
|
| 2005 |
Gollnick P, Babitzke P, Antson A, Yanofsky C. Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. Annual Review of Genetics. 39: 47-68. PMID 16285852 DOI: 10.1146/Annurev.Genet.39.073003.093745 |
0.596 |
|
| 2005 |
Dubey AK, Baker CS, Romeo T, Babitzke P. RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction. Rna (New York, N.Y.). 11: 1579-87. PMID 16131593 DOI: 10.1261/Rna.2990205 |
0.609 |
|
| 2005 |
Wang X, Dubey AK, Suzuki K, Baker CS, Babitzke P, Romeo T. CsrA post-transcriptionally represses pgaABCD, responsible for synthesis of a biofilm polysaccharide adhesin of Escherichia coli. Molecular Microbiology. 56: 1648-63. PMID 15916613 DOI: 10.1111/J.1365-2958.2005.04648.X |
0.636 |
|
| 2004 |
Babitzke P. Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: The Bacillus subtilis TRAP protein Current Opinion in Microbiology. 7: 132-139. PMID 15063849 DOI: 10.1016/J.Mib.2004.02.003 |
0.64 |
|
| 2004 |
Deikus G, Babitzke P, Bechhofer DH. Recycling of a regulatory protein by degradation of the RNA to which it binds. Proceedings of the National Academy of Sciences of the United States of America. 101: 2747-51. PMID 14976255 DOI: 10.1073/Pnas.0307343101 |
0.619 |
|
| 2004 |
Yakhnin H, Zhang H, Yakhnin AV, Babitzke P. The trp RNA-Binding Attenuation Protein of Bacillus subtilis Regulates Translation of the Tryptophan Transport Gene trpP (yhaG) by Blocking Ribosome Binding Journal of Bacteriology. 186: 278-286. PMID 14702295 DOI: 10.1128/Jb.186.2.278-286.2004 |
0.644 |
|
| 2004 |
Yakhnin H, Babitzke P. Gene replacement method for determining conditions in which Bacillus subtilis genes are essential or dispensable for cell viability Applied Microbiology and Biotechnology. 64: 382-386. PMID 14663629 DOI: 10.1007/S00253-003-1502-5 |
0.336 |
|
| 2003 |
Babitzke P, Schaak J, Yakhnin AV, Bevilacqua PC. Role of RNA structure in transcription attenuation in Bacillus subtilis: the trpEDCFBA operon as a model system. Methods in Enzymology. 371: 392-404. PMID 14712717 DOI: 10.1016/S0076-6879(03)71030-1 |
0.562 |
|
| 2003 |
Schaak JE, Babitzke P, Bevilacqua PC. Phylogenetic conservation of RNA secondary and tertiary structure in the trpEDCFBA operon leader transcript in Bacillus. Rna (New York, N.Y.). 9: 1502-15. PMID 14624006 DOI: 10.1261/Rna.5149603 |
0.538 |
|
| 2003 |
Schaak JE, Yakhnin H, Bevilacqua PC, Babitzke P. A Mg2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding. Journal of Molecular Biology. 332: 555-74. PMID 12963367 DOI: 10.1016/S0022-2836(03)00969-0 |
0.606 |
|
| 2003 |
Dubey AK, Baker CS, Suzuki K, Jones AD, Pandit P, Romeo T, Babitzke P. CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript. Journal of Bacteriology. 185: 4450-60. PMID 12867454 DOI: 10.1128/Jb.185.15.4450-4460.2003 |
0.616 |
|
| 2003 |
Weilbacher T, Suzuki K, Dubey AK, Wang X, Gudapaty S, Morozov I, Baker CS, Georgellis D, Babitzke P, Romeo T. A novel sRNA component of the carbon storage regulatory system of Escherichia coli. Molecular Microbiology. 48: 657-70. PMID 12694612 DOI: 10.1046/J.1365-2958.2003.03459.X |
0.58 |
|
| 2002 |
Gollnick P, Babitzke P. Transcription attenuation. Biochimica Et Biophysica Acta. 1577: 240-50. PMID 12213655 DOI: 10.1016/S0167-4781(02)00455-4 |
0.559 |
|
| 2002 |
Suzuki K, Wang X, Weilbacher T, Pernestig AK, Melefors O, Georgellis D, Babitzke P, Romeo T. Regulatory circuitry of the CsrA/CsrB and BarA/UvrY systems of Escherichia coli. Journal of Bacteriology. 184: 5130-40. PMID 12193630 DOI: 10.1128/Jb.184.18.5130-5140.2002 |
0.529 |
|
| 2002 |
Yakhnin AV, Babitzke P. NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism in vitro Proceedings of the National Academy of Sciences of the United States of America. 99: 11067-11072. PMID 12161562 DOI: 10.1073/Pnas.162373299 |
0.617 |
|
| 2002 |
Baker CS, Morozov I, Suzuki K, Romeo T, Babitzke P. CsrA regulates glycogen biosynthesis by preventing translation of glgC in Escherichia coli. Molecular Microbiology. 44: 1599-610. PMID 12067347 DOI: 10.1046/J.1365-2958.2002.02982.X |
0.644 |
|
| 2002 |
Valbuzzi A, Gollnick P, Babitzke P, Yanofsky C. The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein. The Journal of Biological Chemistry. 277: 10608-13. PMID 11786553 DOI: 10.1074/Jbc.M111813200 |
0.626 |
|
| 2001 |
Gudapaty S, Suzuki K, Wang X, Babitzke P, Romeo T. Regulatory interactions of Csr components: The RNA binding protein CsrA activates csrB transcription in Escherichia coli Journal of Bacteriology. 183: 6017-6027. PMID 11567002 DOI: 10.1128/Jb.183.20.6017-6027.2001 |
0.655 |
|
| 2001 |
Yakhnin H, Babiarz JE, Yakhnin AV, Babitzke P. Expression of the Bacillus subtilis trpEDCFBA operon is influenced by translational coupling and Rho termination factor. Journal of Bacteriology. 183: 5918-26. PMID 11566991 DOI: 10.1128/Jb.183.20.5918-5926.2001 |
0.585 |
|
| 2001 |
Babitzke P, Gollnick P. Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structure Journal of Bacteriology. 183: 5795-5802. PMID 11566976 DOI: 10.1128/Jb.183.20.5795-5802.2001 |
0.605 |
|
| 2001 |
Wei BL, Brun-Zinkernagel AM, Simecka JW, Prüss BM, Babitzke P, Romeo T. Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli. Molecular Microbiology. 40: 245-56. PMID 11298291 DOI: 10.1046/J.1365-2958.2001.02380.X |
0.569 |
|
| 2000 |
Du H, Yakhnin AV, Dharmaraj S, Babitzke P. trp RNA-binding attenuation protein-5' stem-loop RNA interaction is required for proper transcription attenuation control of the Bacillus subtilis trpEDCFBA operon Journal of Bacteriology. 182: 1819-1827. PMID 10714985 DOI: 10.1128/Jb.182.7.1819-1827.2000 |
0.55 |
|
| 2000 |
Yakhnin AV, Trimble JJ, Chiaro CR, Babitzke P. Effects of mutations in the L-tryptophan binding pocket of the trp RNA- binding attenuation protein of Bacillus subtilis Journal of Biological Chemistry. 275: 4519-4524. PMID 10660627 DOI: 10.1074/Jbc.275.6.4519 |
0.55 |
|
| 1999 |
Sudershana S, Du H, Mahalanabis M, Babitzke P. A 5' RNA stem-loop participates in the transcription attenuation mechanism that controls expression of the Bacillus subtilis trpEDCFBA operon Journal of Bacteriology. 181: 5742-5749. PMID 10482516 DOI: 10.1128/Jb.181.18.5742-5749.1999 |
0.573 |
|
| 1998 |
Du H, Babitzke P. trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis Journal of Biological Chemistry. 273: 20494-20503. PMID 9685405 DOI: 10.1074/Jbc.273.32.20494 |
0.667 |
|
| 1998 |
Granger LL, O'Hara EB, Wang RF, Meffen FV, Armstrong K, Yancey SD, Babitzke P, Kushner SR. The Escherichia coli mrsC gene is required for cell growth and mRNA decay Journal of Bacteriology. 180: 1920-1928. PMID 9537393 DOI: 10.1128/Jb.180.7.1920-1928.1998 |
0.69 |
|
| 1998 |
Korade-Mirnics Z, Babitzke P, Hoffman E. Myotonic dystrophy: Molecular windows on a complex etiology Nucleic Acids Research. 26: 1363-1368. PMID 9490778 DOI: 10.1093/Nar/26.6.1363 |
0.438 |
|
| 1997 |
Babitzke P. Regulation of tryptophan biosynthesis: Trp-ing the TRAP or how Bacillus subtilis reinvented the wheel Molecular Microbiology. 26: 1-9. PMID 9383185 DOI: 10.1046/J.1365-2958.1997.5541915.X |
0.574 |
|
| 1997 |
Du H, Tarpey R, Babitzke P. The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis Journal of Bacteriology. 179: 2582-2586. PMID 9098056 DOI: 10.1128/Jb.179.8.2582-2586.1997 |
0.622 |
|
| 1996 |
Babitzke P, Yealy J, Campanelli D. Interaction of the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis with RNA: Effects of the number of GAG repeats, the nucleotides separating adjacent repeats, and RNA secondary structure Journal of Bacteriology. 178: 5159-5163. PMID 8752333 DOI: 10.1128/Jb.178.17.5159-5163.1996 |
0.596 |
|
| 1995 |
Babitzke P, Yanofsky C. Structural features of L-tryptophan required for activation of TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis. The Journal of Biological Chemistry. 270: 12452-6. PMID 7759487 DOI: 10.1074/Jbc.270.21.12452 |
0.378 |
|
| 1995 |
Merino E, Babitzke P, Yanofsky C. trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon. Journal of Bacteriology. 177: 6362-70. PMID 7592410 DOI: 10.1128/Jb.177.22.6362-6370.1995 |
0.662 |
|
| 1995 |
Babitzke P, Bear DG, Yanofsky C. TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a toroid-shaped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides. Proceedings of the National Academy of Sciences of the United States of America. 92: 7916-20. PMID 7544009 DOI: 10.1073/Pnas.92.17.7916 |
0.616 |
|
| 1994 |
Babitzke P, Stults JT, Shire SJ, Yanofsky C. TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts. The Journal of Biological Chemistry. 269: 16597-604. PMID 7515880 |
0.549 |
|
| 1993 |
Babitzke P, Granger L, Olszewski J, Kushner SR. Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III. Journal of Bacteriology. 175: 229-39. PMID 8416898 DOI: 10.1128/Jb.175.1.229-239.1993 |
0.672 |
|
| 1993 |
Babitzke P, Yanofsky C. Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. Proceedings of the National Academy of Sciences of the United States of America. 90: 133-7. PMID 7678334 DOI: 10.1073/Pnas.90.1.133 |
0.634 |
|
| 1992 |
Babitzke P, Gollnick P, Yanofsky C. The mtrAB operon of Bacillus subtilis encodes GTP cyclohydrolase I (MtrA), an enzyme involved in folic acid biosynthesis, and MtrB, a regulator of tryptophan biosynthesis. Journal of Bacteriology. 174: 2059-64. PMID 1551827 DOI: 10.1128/Jb.174.7.2059-2064.1992 |
0.377 |
|
| 1991 |
Babitzke P, Kushner SR. The ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 88: 1-5. PMID 1846032 DOI: 10.1073/Pnas.88.1.1 |
0.661 |
|
| 1989 |
Hamilton CM, Aldea M, Washburn BK, Babitzke P, Kushner SR. New method for generating deletions and gene replacements in Escherichia coli. Journal of Bacteriology. 171: 4617-22. PMID 2548993 DOI: 10.1128/Jb.171.9.4617-4622.1989 |
0.567 |
|
| Show low-probability matches. |
