Ariel Rokem, Ph.D. - Publications

Affiliations: 
2015- eScience University of Washington, Seattle, Seattle, WA 
Area:
MRI, Vision, Data Science
Website:
http://arokem.org

41/63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Chandio BQ, Risacher SL, Pestilli F, Bullock D, Yeh FC, Koudoro S, Rokem A, Harezlak J, Garyfallidis E. Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations. Scientific Reports. 10: 17149. PMID 33051471 DOI: 10.1038/s41598-020-74054-4  1
2019 Bressler DW, Rokem A, Silver MA. Slow Endogenous Fluctuations in Cortical Functional Magnetic Resonance Imaging Signals Correlate with Reduced Performance in a Visual Detection Task and Are Suppressed by Spatial Attention. Journal of Cognitive Neuroscience. 1-15. PMID 31560268 DOI: 10.1162/jocn_a_01470  1
2019 Beyeler M, Nanduri D, Weiland JD, Rokem A, Boynton GM, Fine I. A model of ganglion axon pathways accounts for percepts elicited by retinal implants. Scientific Reports. 9: 9199. PMID 31235711 DOI: 10.1038/s41598-019-45416-4  0.96
2019 Keshavan A, Yeatman JD, Rokem A. Combining Citizen Science and Deep Learning to Amplify Expertise in Neuroimaging. Frontiers in Neuroinformatics. 13: 29. PMID 31139070 DOI: 10.3389/fninf.2019.00029  1
2019 Bain JS, Yeatman JD, Schurr R, Rokem A, Mezer AA. Evaluating arcuate fasciculus laterality measurements across dataset and tractography pipelines. Human Brain Mapping. PMID 31106944 DOI: 10.1002/hbm.24626  1
2019 Huber E, Henriques RN, Owen JP, Rokem A, Yeatman JD. Applying microstructural models to understand the role of white matter in cognitive development. Developmental Cognitive Neuroscience. 36: 100624. PMID 30927705 DOI: 10.1016/j.dcn.2019.100624  1
2018 Huber E, Donnelly PM, Rokem A, Yeatman JD. Rapid and widespread white matter plasticity during an intensive reading intervention. Nature Communications. 9: 2260. PMID 29884784 DOI: 10.1038/s41467-018-04627-5  1
2018 Yeatman JD, Richie-Halford A, Smith JK, Keshavan A, Rokem A. A browser-based tool for visualization and analysis of diffusion MRI data. Nature Communications. 9: 940. PMID 29507333 DOI: 10.1038/s41467-018-03297-7  1
2017 Ferizi U, Scherrer B, Schneider T, Alipoor M, Eufracio O, Fick RHJ, Deriche R, Nilsson M, Loya-Olivas AK, Rivera M, Poot DHJ, Ramirez-Manzanares A, Marroquin JL, Rokem A, Pötter C, et al. Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison. Nmr in Biomedicine. PMID 28643354 DOI: 10.1002/nbm.3734  1
2017 Beyeler M, Rokem A, Boynton G, Fine I. Learning to see again: biological constraints on cortical plasticity and the implications for sight restoration technologies. Journal of Neural Engineering. PMID 28612755 DOI: 10.1088/1741-2552/aa795e  0.96
2017 Rokem A, Takemura H, Bock AS, Scherf KS, Behrmann M, Wandell BA, Fine I, Bridge H, Pestilli F. The visual white matter: The application of diffusion MRI and fiber tractography to vision science. Journal of Vision. 17: 4. PMID 28196374 DOI: 10.1167/17.2.4  1
2016 Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, ... ... Rokem A, et al. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data. 3: 160044. PMID 27326542 DOI: 10.1038/sdata.2016.44  1
2016 Mezer A, Rokem A, Berman S, Hastie T, Wandell BA. Evaluating quantitative proton-density-mapping methods. Human Brain Mapping. PMID 27273015 DOI: 10.1002/hbm.23264  1
2016 Cameron Craddock R, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, ... ... Rokem A, et al. Brainhack: a collaborative workshop for the open neuroscience community. Gigascience. 5: 16. PMID 27042293 DOI: 10.1186/s13742-016-0121-x  1
2016 Tian Q, Rokem A, Folkerth RD, Nummenmaa A, Fan Q, Edlow BL, McNab JA. Q-space truncation and sampling in diffusion spectrum imaging. Magnetic Resonance in Medicine. PMID 26762670 DOI: 10.1002/mrm.26071  1
2015 Ajina S, Pestilli F, Rokem A, Kennard C, Bridge H. Human blindsight is mediated by an intact geniculo-extrastriate pathway. Elife. 4. PMID 26485034 DOI: 10.7554/eLife.08935  1
2015 Rokem A, Yeatman JD, Pestilli F, Kay KN, Mezer A, van der Walt S, Wandell BA. Correction: Evaluating the Accuracy of Diffusion MRI Models in White Matter. Plos One. 10: e0139150. PMID 26394229 DOI: 10.1371/journal.pone.0139150  1
2015 Rokem A, Yeatman JD, Pestilli F, Kay KN, Mezer A, van der Walt S, Wandell BA. Evaluating the accuracy of diffusion MRI models in white matter. Plos One. 10: e0123272. PMID 25879933 DOI: 10.1371/journal.pone.0123272  1
2015 Takemura H, Rokem A, Winawer J, Yeatman JD, Wandell BA, Pestilli F. A Major Human White Matter Pathway Between Dorsal and Ventral Visual Cortex. Cerebral Cortex (New York, N.Y. : 1991). PMID 25828567 DOI: 10.1093/cercor/bhv064  1
2014 Zheng CY, Pestilli F, Rokem A. Deconvolution of High Dimensional Mixtures via Boosting, with Application to Diffusion-Weighted MRI of Human Brain. Advances in Neural Information Processing Systems. 27: 2699-2707. PMID 25684972  1
2014 Yeatman JD, Weiner KS, Pestilli F, Rokem A, Mezer A, Wandell BA. The vertical occipital fasciculus: a century of controversy resolved by in vivo measurements. Proceedings of the National Academy of Sciences of the United States of America. 111: E5214-23. PMID 25404310 DOI: 10.1073/pnas.1418503111  1
2014 Pestilli F, Yeatman JD, Rokem A, Kay KN, Wandell BA. Evaluation and statistical inference for human connectomes. Nature Methods. 11: 1058-63. PMID 25194848 DOI: 10.1038/nmeth.3098  1
2014 Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics. 8: 8. PMID 24600385 DOI: 10.3389/fninf.2014.00008  1
2014 McDevitt EA, Rokem A, Silver MA, Mednick SC. Sex differences in sleep-dependent perceptual learning. Vision Research. 99: 172-9. PMID 24141074 DOI: 10.1016/j.visres.2013.10.009  1
2013 Kay KN, Rokem A, Winawer J, Dougherty RF, Wandell BA. GLMdenoise: a fast, automated technique for denoising task-based fMRI data. Frontiers in Neuroscience. 7: 247. PMID 24381539 DOI: 10.3389/fnins.2013.00247  1
2013 Yoon JH, Sheremata SL, Rokem A, Silver MA. Windows to the soul: vision science as a tool for studying biological mechanisms of information processing deficits in schizophrenia. Frontiers in Psychology. 4: 681. PMID 24198792 DOI: 10.3389/fpsyg.2013.00681  1
2013 Rokem A, Silver MA. The benefits of cholinergic enhancement during perceptual learning are long-lasting. Frontiers in Computational Neuroscience. 7: 66. PMID 23755006 DOI: 10.3389/fncom.2013.00066  1
2013 Kay KN, Winawer J, Rokem A, Mezer A, Wandell BA. A two-stage cascade model of BOLD responses in human visual cortex. Plos Computational Biology. 9: e1003079. PMID 23737741 DOI: 10.1371/journal.pcbi.1003079  1
2012 Kosovicheva AA, Sheremata SL, Rokem A, Landau AN, Silver MA. Cholinergic enhancement reduces orientation-specific surround suppression but not visual crowding. Frontiers in Behavioral Neuroscience. 6: 61. PMID 23049505 DOI: 10.3389/fnbeh.2012.00061  1
2012 Rokem A, Landau AN, Prinzmetal W, Wallace DL, Silver MA, D'Esposito M. Modulation of inhibition of return by the dopamine D2 receptor agonist bromocriptine depends on individual DAT1 genotype. Cerebral Cortex (New York, N.Y. : 1991). 22: 1133-8. PMID 21799208 DOI: 10.1093/cercor/bhr185  1
2012 Kosovicheva AA, Sheremata SL, Rokem A, Landau AN, Silver MA. Cholinergic enhancement reduces 1 orientation-specific surround suppression but not visual crowding Frontiers in Behavioral Neuroscience 1
2011 Rokem A, Yoon JH, Ooms RE, Maddock RJ, Minzenberg MJ, Silver MA. Broader visual orientation tuning in patients with schizophrenia. Frontiers in Human Neuroscience. 5: 127. PMID 22069385 DOI: 10.3389/fnhum.2011.00127  1
2010 Rokem A, Silver MA. Cholinergic enhancement augments magnitude and specificity of visual perceptual learning in healthy humans. Current Biology : Cb. 20: 1723-8. PMID 20850321 DOI: 10.1016/j.cub.2010.08.027  1
2010 Rokem A, Landau AN, Garg D, Prinzmetal W, Silver MA. Cholinergic enhancement increases the effects of voluntary attention but does not affect involuntary attention. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 35: 2538-44. PMID 20811340 DOI: 10.1038/npp.2010.118  1
2010 Yoon JH, Maddock RJ, Rokem A, Silver MA, Minzenberg MJ, Ragland JD, Carter CS. GABA concentration is reduced in visual cortex in schizophrenia and correlates with orientation-specific surround suppression. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 3777-81. PMID 20220012 DOI: 10.1523/JNEUROSCI.6158-09.2010  1
2009 Eyherabide HG, Rokem A, Herz AV, Samengo I. Bursts generate a non-reducible spike-pattern code. Frontiers in Neuroscience. 3: 8-14. PMID 19753092 DOI: 10.3389/neuro.01.002.2009  1
2009 Yoon JH, Rokem AS, Silver MA, Minzenberg MJ, Ursu S, Ragland JD, Carter CS. Diminished orientation-specific surround suppression of visual processing in schizophrenia. Schizophrenia Bulletin. 35: 1078-84. PMID 19620601 DOI: 10.1093/schbul/sbp064  1
2009 Rokem A, Silver MA. A model of encoding and decoding in V1 and MT accounts for motion perception anisotropies in the human visual system. Brain Research. 1299: 3-16. PMID 19595992 DOI: 10.1016/j.brainres.2009.07.005  1
2009 Rokem A, Ahissar M. Interactions of cognitive and auditory abilities in congenitally blind individuals. Neuropsychologia. 47: 843-8. PMID 19138693 DOI: 10.1016/j.neuropsychologia.2008.12.017  1
2008 Eyherabide HG, Rokem A, Herz AV, Samengo I. Burst firing is a neural code in an insect auditory system. Frontiers in Computational Neuroscience. 2: 3. PMID 18946533 DOI: 10.3389/neuro.10.003.2008  1
2006 Rokem A, Watzl S, Gollisch T, Stemmler M, Herz AV, Samengo I. Spike-timing precision underlies the coding efficiency of auditory receptor neurons. Journal of Neurophysiology. 95: 2541-52. PMID 16354733 DOI: 10.1152/jn.00891.2005  1
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2019 Lee CS, Tyring AJ, Wu Y, Xiao S, Rokem AS, DeRuyter NP, Zhang Q, Tufail A, Wang RK, Lee AY. Generating retinal flow maps from structural optical coherence tomography with artificial intelligence. Scientific Reports. 9: 5694. PMID 30952891 DOI: 10.1038/s41598-019-42042-y  0.08
2019 Wen JC, Lee CS, Keane PA, Xiao S, Rokem AS, Chen PP, Wu Y, Lee AY. Forecasting future Humphrey Visual Fields using deep learning. Plos One. 14: e0214875. PMID 30951547 DOI: 10.1371/journal.pone.0214875  0.04
2020 Rokem A, Kay K. Fractional ridge regression: a fast, interpretable reparameterization of ridge regression. Gigascience. 9. PMID 33252656 DOI: 10.1093/gigascience/giaa133  0.01
2020 Chandio BQ, Risacher SL, Pestilli F, Bullock D, Yeh F, Koudoro S, Rokem A, Harezlak J, Garyfallidis E. Bundle analytics, a computational framework for investigating the shapes and profiles of brain pathways across populations Scientific Reports. 10. DOI: 10.1038/s41598-020-74054-4  0.01
2019 Curtis C, Rokem A, Nance E. diff_classifier: Parallelization of multi-particle tracking video analyses. Journal of Open Source Software. 4. PMID 31431940 DOI: 10.21105/joss.00989  0.01
2019 Tian Q, Yang G, Leuze CWU, Rokem A, Edlow BL, McNab JA. Generalized diffusion spectrum magnetic resonance imaging (GDSI) for model-free reconstruction of the ensemble average propagator. Neuroimage. PMID 30684636 DOI: 10.1016/j.neuroimage.2019.01.038  0.01
2018 Smith AM, Niemeyer KE, Katz DS, Barba LA, Githinji G, Gymrek M, Huff KD, Madan CR, Mayes AC, Moerman KM, Prins P, Ram K, Rokem A, Teal TK, Guimera RV, et al. Journal of Open Source Software (JOSS): design and first-year review. Peerj Preprints. 4: e147. PMID 32704456 DOI: 10.7717/peerj-cs.147  0.01
2018 Lee C, Rokem A, Lee A. Reply. Ophthalmology. Retina. 2: e3. PMID 31047354 DOI: 10.1016/j.oret.2017.11.006  0.01
2018 Huppenkothen D, Arendt A, Hogg DW, Ram K, VanderPlas JT, Rokem A. Hack weeks as a model for data science education and collaboration. Proceedings of the National Academy of Sciences of the United States of America. PMID 30127025 DOI: 10.1073/pnas.1717196115  0.01
2018 Beyeler M, Nanduri D, Weiland J, Rokem A, Boynton G, Fine I. Optimizing stimulation protocols for prosthetic vision based on retinal anatomy Journal of Vision. 18: 205. DOI: 10.1167/18.10.205  0.01
2017 Xiao S, Bucher F, Wu Y, Rokem A, Lee CS, Marra KV, Fallon R, Diaz-Aguilar S, Aguilar E, Friedlander M, Lee AY. Fully automated, deep learning segmentation of oxygen-induced retinopathy images. Jci Insight. 2. PMID 29263301 DOI: 10.1172/jci.insight.97585  0.01
2017 Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, ... ... Rokem A, et al. Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome Medicine. 9: 113. PMID 29254494 DOI: 10.1186/s13073-017-0509-y  0.01
2017 Lee CS, Tyring AJ, Deruyter NP, Wu Y, Rokem A, Lee AY. Deep-learning based, automated segmentation of macular edema in optical coherence tomography. Biomedical Optics Express. 8: 3440-3448. PMID 28717579 DOI: 10.1364/BOE.8.003440  0.01
2017 Beyeler M, Rokem A, Boynton GM, Fine I. Improving retinal prostheses using the “virtual patient” Journal of Vision. 17: 11. DOI: 10.1167/17.15.11  0.01
2017 Beyeler M, Rokem A, Boynton G, Fine I. Modeling the perceptual experience of retinal prosthesis patients Journal of Vision. 17: 573. DOI: 10.1167/17.10.573  0.01
2015 Kaitz M, Mankuta D, Rokem AM, Faraone SV. Relation between maternal antenatal anxiety and infants' weight depends on infants' sex: A longitudinal study from late gestation to 1-month post birth. Journal of Psychosomatic Research. PMID 26227554 DOI: 10.1016/j.jpsychores.2015.07.006  0.01
2015 Kaitz M, Mankuta D, Rokem AM, Faraone SV. Relation between maternal antenatal anxiety and infants' weight depends on infants' sex: A longitudinal study from late gestation to 1-month post birth Journal of Psychosomatic Research. DOI: 10.1016/j.jpsychores.2015.07.006  0.01
2014 Kaitz M, Mankuta D, Rokem AM, Faraone SV. Moderate antenatal anxiety symptoms and birth outcomes of boys and girls. Journal of Psychosomatic Obstetrics and Gynaecology. 35: 116-23. PMID 25204367 DOI: 10.3109/0167482X.2014.952279  0.01
2014 Kaitz M, Rokem AM, Mankuta D, Davidov M, Faraone SV. Exposure to childhood traumas ups the odds of giving birth to daughters. Archives of Women's Mental Health. 17: 159-66. PMID 24221408 DOI: 10.1007/s00737-013-0394-3  0.01
1988 Kaitz M, Rokem AM, Eidelman AI. Infants' face-recognition by primiparous and multiparous women. Perceptual and Motor Skills. 67: 495-502. PMID 3217197 DOI: 10.2466/pms.1988.67.2.495  0.01
1988 Kaitz M, Good A, Rokem AM, Eidelman AI. Mothers' and fathers' recognition of their newborns' photographs during the postpartum period. Journal of Developmental and Behavioral Pediatrics : Jdbp. 9: 223-6. PMID 3216003  0.01
1987 Kaitz M, Good A, Rokem AM, Eidelman AI. Mothers' recognition of their newborns by olfactory cues. Developmental Psychobiology. 20: 587-91. PMID 3691966 DOI: 10.1002/dev.420200604  0.01
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