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Peter R. Weigele, Ph.D. - Publications

Affiliations: 
2003 University of Utah, Salt Lake City, UT 
Area:
Molecular Biology, Microbiology Biology
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cui L, Balamkundu S, Liu CF, Ye H, Hourihan J, Rausch A, Hauß C, Nilsson E, Hoetzinger M, Holmfeldt K, Zhang W, Martinez-Alvarez L, Peng X, Tremblay D, Moinau S, ... ... Weigele PR, et al. Four additional natural 7-deazaguanine derivatives in phages and how to make them. Nucleic Acids Research. PMID 37572349 DOI: 10.1093/nar/gkad657  0.35
2021 Hutinet G, Lee YJ, de Crécy-Lagard V, Weigele PR. Hypermodified DNA in Viruses of E. coli and Salmonella. Ecosal Plus. 9: eESP00282019. PMID 34910575 DOI: 10.1128/ecosalplus.ESP-0028-2019  0.354
2021 Lee YJ, Dai N, Müller SI, Guan C, Parker MJ, Fraser ME, Walsh SE, Sridar J, Mulholland A, Nayak K, Sun Z, Lin YC, Comb DG, Marks K, Gonzalez R, ... ... Weigele PR, et al. Pathways of thymidine hypermodification. Nucleic Acids Research. PMID 34522950 DOI: 10.1093/nar/gkab781  0.317
2021 Burke EJ, Rodda SS, Lund SR, Sun Z, Zeroka MR, O'Toole KH, Parker MJ, Doshi DS, Guan C, Lee YJ, Dai N, Hough DM, Shnider DA, Corrêa IR, Weigele PR, et al. Phage-encoded ten-eleven translocation dioxygenase (TET) is active in C5-cytosine hypermodification in DNA. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34155108 DOI: 10.1073/pnas.2026742118  0.31
2021 Lee YJ, Weigele PR. Detection of Modified Bases in Bacteriophage Genomic DNA. Methods in Molecular Biology (Clifton, N.J.). 2198: 53-66. PMID 32822022 DOI: 10.1007/978-1-0716-0876-0_5  0.42
2020 Flodman K, Corrêa IR, Dai N, Weigele P, Xu SY. Type II Restriction of Bacteriophage DNA With Modified Pyrimidines. Frontiers in Microbiology. 11: 604618. PMID 33193286 DOI: 10.3389/fmicb.2020.604618  0.307
2020 Gasiunas G, Young JK, Karvelis T, Kazlauskas D, Urbaitis T, Jasnauskaite M, Grusyte MM, Paulraj S, Wang PH, Hou Z, Dooley SK, Cigan M, Alarcon C, Chilcoat ND, Bigelyte G, ... ... Weigele PR, et al. A catalogue of biochemically diverse CRISPR-Cas9 orthologs. Nature Communications. 11: 5512. PMID 33139742 DOI: 10.1038/s41467-020-19344-1  0.306
2019 Hutinet G, Kot W, Cui L, Hillebrand R, Balamkundu S, Gnanakalai S, Neelakandan R, Carstens AB, Fa Lui C, Tremblay D, Jacobs-Sera D, Sassanfar M, Lee YJ, Weigele P, Moineau S, et al. 7-Deazaguanine modifications protect phage DNA from host restriction systems. Nature Communications. 10: 5442. PMID 31784519 DOI: 10.1038/S41467-019-13384-Y  0.436
2019 Crippen CS, Lee YJ, Hutinet G, Shajahan A, Sacher JC, Azadi P, de Crécy-Lagard V, Weigele PR, Szymanski CM. Deoxyinosine and 7-deaza-2-deoxyguanosine as carriers of genetic information in the DNA of viruses. Journal of Virology. PMID 31511377 DOI: 10.1128/Jvi.01111-19  0.454
2019 Flodman K, Tsai R, Xu MY, Corrêa IR, Copelas A, Lee YJ, Xu MQ, Weigele P, Xu SY. Type II Restriction of Bacteriophage DNA With 5hmdU-Derived Base Modifications. Frontiers in Microbiology. 10: 584. PMID 30984133 DOI: 10.3389/Fmicb.2019.00584  0.419
2018 Saleh L, Parker MJ, Weigele PR. Insights into the biochemistry, evolution, and biotechnological applications of the ten-eleven translocation (TET) enzymes. Biochemistry. PMID 30571101 DOI: 10.1021/Acs.Biochem.8B01185  0.368
2018 Lee YJ, Dai N, Walsh SE, Müller S, Fraser ME, Kauffman KM, Guan C, Corrêa IR, Weigele PR. Identification and biosynthesis of thymidine hypermodifications in the genomic DNA of widespread bacterial viruses. Proceedings of the National Academy of Sciences of the United States of America. PMID 29555775 DOI: 10.1073/Pnas.1714812115  0.431
2016 Weigele P, Raleigh EA. Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses. Chemical Reviews. PMID 27319741 DOI: 10.1021/Acs.Chemrev.6B00114  0.426
2015 Carson S, Wilson J, Aksimentiev A, Weigele PR, Wanunu M. Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA. Nucleic Acids Research. PMID 26578595 DOI: 10.1093/Nar/Gkv1199  0.394
2012 Padilla-Meier GP, Gilcrease EB, Weigele PR, Cortines JR, Siegel M, Leavitt JC, Teschke CM, Casjens SR. Unraveling the role of the C-terminal helix turn helix of the coat-binding domain of bacteriophage P22 scaffolding protein. The Journal of Biological Chemistry. 287: 33766-80. PMID 22879595 DOI: 10.1074/Jbc.M112.393132  0.371
2011 Cortines JR, Weigele PR, Gilcrease EB, Casjens SR, Teschke CM. Decoding bacteriophage P22 assembly: identification of two charged residues in scaffolding protein responsible for coat protein interaction. Virology. 421: 1-11. PMID 21974803 DOI: 10.1016/J.Virol.2011.09.005  0.405
2010 Chang JT, Schmid MF, Haase-Pettingell C, Weigele PR, King JA, Chiu W. Visualizing the structural changes of bacteriophage Epsilon15 and its Salmonella host during infection. Journal of Molecular Biology. 402: 731-40. PMID 20709082 DOI: 10.1016/J.Jmb.2010.07.058  0.429
2010 Sullivan MB, Huang KH, Ignacio-Espinoza JC, Berlin AM, Kelly L, Weigele PR, DeFrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, et al. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environmental Microbiology. 12: 3035-56. PMID 20662890 DOI: 10.1111/J.1462-2920.2010.02280.X  0.354
2009 Liu Y, Carbonell J, Gopalakrishnan V, Weigele P. Conditional graphical models for protein structural motif recognition. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 639-57. PMID 19432536 DOI: 10.1089/Cmb.2008.0176  0.345
2008 Wang H, Duennwald ML, Roberts BE, Rozeboom LM, Zhang YL, Steele AD, Krishnan R, Su LJ, Griffin D, Mukhopadhyay S, Hennessy EJ, Weigele P, Blanchard BJ, King J, Deniz AA, et al. Direct and selective elimination of specific prions and amyloids by 4,5-dianilinophthalimide and analogs. Proceedings of the National Academy of Sciences of the United States of America. 105: 7159-64. PMID 18480256 DOI: 10.1073/Pnas.0801934105  0.304
2008 Jiang W, Baker ML, Jakana J, Weigele PR, King J, Chiu W. Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy. Nature. 451: 1130-4. PMID 18305544 DOI: 10.1038/Nature06665  0.412
2007 Weigele PR, Pope WH, Pedulla ML, Houtz JM, Smith AL, Conway JF, King J, Hatfull GF, Lawrence JG, Hendrix RW. Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environmental Microbiology. 9: 1675-95. PMID 17564603 DOI: 10.1111/J.1462-2920.2007.01285.X  0.472
2007 Pope WH, Weigele PR, Chang J, Pedulla ML, Ford ME, Houtz JM, Jiang W, Chiu W, Hatfull GF, Hendrix RW, King J. Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine synechococcus. Journal of Molecular Biology. 368: 966-81. PMID 17383677 DOI: 10.1016/J.Jmb.2007.02.046  0.427
2006 Chang J, Weigele P, King J, Chiu W, Jiang W. Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery. Structure (London, England : 1993). 14: 1073-82. PMID 16730179 DOI: 10.1016/J.Str.2006.05.007  0.473
2006 Liu Y, Carbonell J, Weigele P, Gopalakrishnan V. Protein fold recognition using segmentation conditional random fields (SCRFs). Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 394-406. PMID 16597248 DOI: 10.1089/Cmb.2006.13.394  0.33
2006 Jiang W, Chang J, Jakana J, Weigele P, King J, Chiu W. Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus Nature. 439: 612-616. PMID 16452981 DOI: 10.1038/Nature04487  0.479
2005 Weigele PR, Haase-Pettingell C, Campbell PG, Gossard DC, King J. Stalled folding mutants in the triple beta-helix domain of the phage P22 tailspike adhesin. Journal of Molecular Biology. 354: 1103-17. PMID 16289113 DOI: 10.1016/J.Jmb.2005.10.007  0.338
2005 Weigele PR, Sampson L, Winn-Stapley D, Casjens SR. Molecular genetics of bacteriophage P22 scaffolding protein's functional domains. Journal of Molecular Biology. 348: 831-44. PMID 15843016 DOI: 10.1016/J.Jmb.2005.03.004  0.451
2005 Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. Plos Biology. 3: e144. PMID 15828858 DOI: 10.1371/Journal.Pbio.0030144  0.343
2003 Weigele PR, Scanlon E, King J. Homotrimeric, beta-stranded viral adhesins and tail proteins. Journal of Bacteriology. 185: 4022-30. PMID 12837775 DOI: 10.1128/Jb.185.14.4022-4030.2003  0.346
2000 Sun Y, Parker MH, Weigele P, Casjens S, Prevelige PE, Krishna NR. Structure of the coat protein-binding domain of the scaffolding protein from a double-stranded DNA virus Journal of Molecular Biology. 297: 1195-1202. PMID 10764583 DOI: 10.1006/Jmbi.2000.3620  0.412
1998 Tuma R, Parker MH, Weigele P, Sampson L, Sun Y, Krishna NR, Casjens S, Thomas GJ, Prevelige PE. A helical coat protein recognition domain of the bacteriophage P22 scaffolding protein Journal of Molecular Biology. 281: 81-94. PMID 9680477 DOI: 10.1006/Jmbi.1998.1916  0.387
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