☰

Jijun Tang, Ph.D. - Publications

Affiliations: 
University of South Carolina, Columbia, SC 
Area:
Computer Science, Molecular Biology, Biostatistics Biology
Website:
https://cse.sc.edu/~jtang/
Tree Info Similar researchers PubMed Report error

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang Z, Wang W, Xia R, Pan G, Wang J, Tang J. Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm. Bmc Bioinformatics. 21: 516. PMID 33176688 DOI: 10.1186/s12859-020-03833-7  0.318
2020 Li S, Jiang L, Tang J, Gao N, Guo F. Kernel Fusion Method for Detecting Cancer Subtypes via Selecting Relevant Expression Data. Frontiers in Genetics. 11: 979. PMID 33133130 DOI: 10.3389/Fgene.2020.00979  0.493
2020 Li J, Pu Y, Tang J, Zou Q, Guo F. DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences. Briefings in Bioinformatics. PMID 32778871 DOI: 10.1093/Bib/Bbaa159  0.315
2020 Guo X, Zhou W, Yu Y, Ding Y, Tang J, Guo F. A Novel Triple Matrix Factorization Method for Detecting Drug-Side Effect Association Based on Kernel Target Alignment. Biomed Research International. 2020: 4675395. PMID 32596314 DOI: 10.1155/2020/4675395  0.31
2020 Zhang J, Zhang Z, Pu L, Tang J, Guo F. AIEpred: an ensemble predictive model of classifier chain to identify anti-inflammatory peptides. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31985437 DOI: 10.1109/Tcbb.2020.2968419  0.308
2020 Wang Z, He W, Tang J, Guo F. Identification of highest-affinity binding sites of yeast transcription factor families. Journal of Chemical Information and Modeling. PMID 31944107 DOI: 10.1021/Acs.Jcim.9B01012  0.386
2020 Pan G, Wang J, Zhao L, Hoskins W, Tang J. Computational Methods for Predicting DNA Binding Proteins Current Proteomics. 17: 258-270. DOI: 10.2174/1570164616666190722141129  0.355
2020 Ding Y, Chen F, Guo X, Tang J, Wu H. Identification of DNA-Binding Proteins by Multiple Kernel Support Vector Machine and Sequence Information Current Proteomics. 17: 302-310. DOI: 10.2174/1570164616666190417100509  0.3
2020 Wang H, Ding Y, Tang J, Guo F. Identification of membrane protein types via multivariate information fusion with Hilbert–Schmidt Independence Criterion Neurocomputing. 383: 257-269. DOI: 10.1016/J.Neucom.2019.11.103  0.313
2020 Ding Y, Tang J, Guo F. Identification of Drug–Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion Knowledge Based Systems. 204: 106254. DOI: 10.1016/J.Knosys.2020.106254  0.341
2020 Ding Y, Tang J, Guo F. Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation Applied Soft Computing. 96: 106596. DOI: 10.1016/J.Asoc.2020.106596  0.323
2019 Shen Y, Ding Y, Tang J, Zou Q, Guo F. Critical evaluation of web-based prediction tools for human protein subcellular localization. Briefings in Bioinformatics. PMID 31697319 DOI: 10.1093/Bib/Bbz106  0.329
2019 Zou Y, Ding Y, Tang J, Guo F, Peng L. FKRR-MVSF: A Fuzzy Kernel Ridge Regression Model for Identifying DNA-Binding Proteins by Multi-View Sequence Features via Chou's Five-Step Rule. International Journal of Molecular Sciences. 20. PMID 31454964 DOI: 10.3390/Ijms20174175  0.347
2019 Jiang L, Wang C, Tang J, Guo F. Correction to: LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data. Bmc Genomics. 20: 365. PMID 31084602 DOI: 10.1186/S12864-019-5742-X  0.337
2019 Jiang L, Wang C, Tang J, Guo F. LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data. Bmc Genomics. 20: 306. PMID 31014252 DOI: 10.1186/S12864-019-5654-9  0.328
2019 Ding Y, Tang J, Guo F. The computational models of drug-target interaction prediction. Protein and Peptide Letters. PMID 30968771 DOI: 10.2174/0929866526666190410124110  0.343
2019 Jiang L, Xiao Y, Ding Y, Tang J, Guo F. Discovering Cancer Subtypes via an Accurate Fusion Strategy on Multiple Profile Data. Frontiers in Genetics. 10: 20. PMID 30804977 DOI: 10.3389/Fgene.2019.00020  0.334
2019 Shen C, Ding Y, Tang J, Jiang L, Guo F. LPI-KTASLP: Prediction of LncRNA-Protein Interaction by Semi-Supervised Link Learning With Multivariate Information Ieee Access. 7: 13486-13496. DOI: 10.1109/Access.2019.2894225  0.327
2018 Shen C, Ding Y, Tang J, Guo F. Multivariate Information Fusion With Fast Kernel Learning to Kernel Ridge Regression in Predicting LncRNA-Protein Interactions. Frontiers in Genetics. 9: 716. PMID 30697228 DOI: 10.3389/Fgene.2018.00716  0.35
2018 Shen Y, Tang J, Guo F. Identification of protein subcellular localization via integrating evolutionary and physicochemical information into Chou's general PseAAC. Journal of Theoretical Biology. PMID 30452958 DOI: 10.1016/J.Jtbi.2018.11.012  0.328
2018 Xia R, Lin Y, Zhou J, Geng T, Bing F, Tang J. Phylogenetic Reconstruction for Copy-Number Evolution Problems. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29993694 DOI: 10.1109/Tcbb.2018.2829698  0.339
2018 Zhang Y, An L, Xu J, Zhang B, Zheng WJ, Hu M, Tang J, Yue F. Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus. Nature Communications. 9: 750. PMID 29467363 DOI: 10.1038/S41467-018-03113-2  0.546
2018 Pan G, Jiang L, Tang J, Guo F. A Novel Computational Method for Detecting DNA Methylation Sites with DNA Sequence Information and Physicochemical Properties. International Journal of Molecular Sciences. 19. PMID 29419752 DOI: 10.3390/Ijms19020511  0.349
2018 Zhang Y, Hoskins W, Xia R, Xia X, Zheng JW, Tang J. A flexible approach to reconstruct the genomic spatial structure by the genetic algorithm International Journal of Computational Biology and Drug Design. 11: 39-51. DOI: 10.1504/Ijcbdd.2018.090825  0.331
2018 Jang SM, Geng T, Li JQ, Xia R, Huang C, Kim H, Tang J. A computational approach for examining the roots and spreading patterns of fake news: Evolution tree analysis Computers in Human Behavior. 84: 103-113. DOI: 10.1016/J.Chb.2018.02.032  0.31
2017 Zhou L, Lin Y, Feng B, Zhao J, Tang J. Phylogeny analysis from gene-order data with massive duplications. Bmc Genomics. 18: 760. PMID 29513196 DOI: 10.1186/S12864-017-4129-0  0.483
2017 Wei L, Tang J, Zou Q. SkipCPP-Pred: an improved and promising sequence-based predictor for predicting cell-penetrating peptides. Bmc Genomics. 18: 742. PMID 29513192 DOI: 10.1186/S12864-017-4128-1  0.301
2017 Shen C, Ding Y, Tang J, Song J, Guo F. Identification of DNA-protein Binding Sites through Multi-Scale Local Average Blocks on Sequence Information. Molecules (Basel, Switzerland). 22. PMID 29182548 DOI: 10.3390/Molecules22122079  0.339
2017 Ding Y, Tang J, Guo F. Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier. Journal of Chemical Information and Modeling. PMID 29125297 DOI: 10.1021/Acs.Jcim.7B00307  0.355
2017 Feng B, Lin Y, Zhou L, Guo Y, Friedman R, Xia R, Hu F, Liu C, Tang J. Reconstructing Yeasts Phylogenies and Ancestors from Whole Genome Data. Scientific Reports. 7: 15209. PMID 29123238 DOI: 10.1038/S41598-017-15484-5  0.469
2017 Feng B, Zhou L, Tang J. Ancestral Genome Reconstruction on Whole Genome Level. Current Genomics. 18: 306-315. PMID 29081686 DOI: 10.2174/1389202918666170307120943  0.445
2017 Xia R, Lin Y, Zhou J, Feng B, Tang J. A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 29035570 DOI: 10.1089/Cmb.2017.0157  0.428
2017 Wang Y, Ding Y, Guo F, Wei L, Tang J. Improved detection of DNA-binding proteins via compression technology on PSSM information. Plos One. 12: e0185587. PMID 28961273 DOI: 10.1371/Journal.Pone.0185587  0.345
2017 Zhang Z, Guo K, Pan G, Tang J, Guo F. Improvement of phylogenetic method to analyze compositional heterogeneity. Bmc Systems Biology. 11: 79. PMID 28950863 DOI: 10.1186/S12918-017-0453-X  0.366
2017 Shen C, Ding Y, Tang J, Xu X, Guo F. An Ameliorated Prediction of Drug-Target Interactions Based on Multi-Scale Discrete Wavelet Transform and Network Features. International Journal of Molecular Sciences. 18. PMID 28813000 DOI: 10.3390/Ijms18081781  0.304
2017 Luo H, Huang Y, Stepanauskas R, Tang J. Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes. Nature Microbiology. 2: 17091. PMID 28604700 DOI: 10.1038/Nmicrobiol.2017.91  0.392
2017 Chen QY, Tang J, Du PF. Predicting protein lysine phosphoglycerylation sites by hybridizing many sequence based features. Molecular Biosystems. PMID 28396891 DOI: 10.1039/C6Mb00875E  0.332
2017 Pan G, Tang J, Guo F. Analysis of Co-Associated Transcription Factors via Ordered Adjacency Differences on Motif Distribution. Scientific Reports. 7: 43597. PMID 28240320 DOI: 10.1038/Srep43597  0.349
2017 Wei L, Xing P, Tang J, Zou Q. PhosPred-RF: a novel sequence-based predictor for phosphorylation sites using sequential information only. Ieee Transactions On Nanobioscience. PMID 28166503 DOI: 10.1109/Tnb.2017.2661756  0.331
2017 Wei L, Ding Y, Su R, Tang J, Zou Q. Prediction of human protein subcellular localization using deep learning Journal of Parallel and Distributed Computing. 117: 212-217. DOI: 10.1016/J.Jpdc.2017.08.009  0.302
2017 Ding Y, Tang J, Guo F. Identification of drug-target interactions via multiple information integration Information Sciences. 418: 546-560. DOI: 10.1016/J.Ins.2017.08.045  0.343
2017 Wei L, Tang J, Zou Q. Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information Information Sciences. 384: 135-144. DOI: 10.1016/J.Ins.2016.06.026  0.332
2016 Zou Q, Wan S, Ju Y, Tang J, Zeng X. Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy. Bmc Systems Biology. 10: 114. PMID 28155714 DOI: 10.1186/S12918-016-0353-5  0.314
2016 Zhou J, Lin Y, Rajan V, Hoskins W, Feng B, Tang J. Analysis of gene copy number changes in tumor phylogenetics. Algorithms For Molecular Biology : Amb. 11: 26. PMID 27688796 DOI: 10.1186/S13015-016-0088-2  0.305
2016 Ding Y, Tang J, Guo F. Predicting protein-protein interactions via multivariate mutual information of protein sequences. Bmc Bioinformatics. 17: 398. PMID 27677692 DOI: 10.1186/S12859-016-1253-9  0.317
2016 Ding Y, Tang J, Guo F. Identification of Protein-Protein Interactions via a Novel Matrix-Based Sequence Representation Model with Amino Acid Contact Information. International Journal of Molecular Sciences. 17. PMID 27669239 DOI: 10.3390/Ijms17101623  0.371
2015 Gao N, Zhang Y, Feng B, Tang J. A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1248-1254. PMID 26671797 DOI: 10.1109/Tcbb.2015.2430860  0.594
2015 Guo F, Ding Y, Li Z, Tang J. Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface. Journal of Chemical Information and Modeling. PMID 26284382 DOI: 10.1021/Acs.Jcim.5B00320  0.326
2015 Yin Z, Tang J, Schaeffer SW, Bader DA. Exemplar or matching: modeling DCJ problems with unequal content genome data Journal of Combinatorial Optimization. DOI: 10.1007/S10878-015-9940-4  0.436
2014 Hu F, Zhou J, Zhou L, Tang J. Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 667-72. PMID 26356337 DOI: 10.1109/Tcbb.2014.2309602  0.462
2014 Hu F, Lin Y, Tang J. MLGO: phylogeny reconstruction and ancestral inference from gene-order data. Bmc Bioinformatics. 15: 354. PMID 25376663 DOI: 10.1186/S12859-014-0354-6  0.459
2014 Shepherd JJ, Zhou L, Arndt W, Zhang Y, Zheng WJ, Tang J. Exploring genomes with a game engine. Faraday Discussions. 169: 443-53. PMID 25340329 DOI: 10.1039/C3Fd00152K  0.746
2014 Yang N, Hu F, Zhou L, Tang J. Reconstruction of ancestral gene orders using probabilistic and gene encoding approaches. Plos One. 9: e108796. PMID 25302942 DOI: 10.1371/Journal.Pone.0108796  0.467
2014 Qin T, Matmati N, Tsoi LC, Mohanty BK, Gao N, Tang J, Lawson AB, Hannun YA, Zheng WJ. Finding pathway-modulating genes from a novel Ontology Fingerprint-derived gene network. Nucleic Acids Research. 42: e138. PMID 25063300 DOI: 10.1093/Nar/Gku678  0.519
2013 Gao N, Yang N, Tang J. Ancestral genome inference using a genetic algorithm approach. Plos One. 8: e62156. PMID 23658708 DOI: 10.1371/Journal.Pone.0062156  0.614
2013 Du FK, Xu F, Qu H, Feng S, Tang J, Wu R. Exploiting the transcriptome of Euphrates Poplar, Populus euphratica (Salicaceae) to develop and characterize new EST-SSR markers and construct an EST-SSR database. Plos One. 8: e61337. PMID 23593466 DOI: 10.1371/Journal.Pone.0061337  0.31
2013 Lin Y, Hu F, Tang J, Moret BM. Maximum likelihood phylogenetic reconstruction from high-resolution whole-genome data and a tree of 68 eukaryotes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 285-96. PMID 23424133  0.339
2012 Luo H, Arndt W, Zhang Y, Shi G, Alekseyev MA, Tang J, Hughes AL, Friedman R. Phylogenetic analysis of genome rearrangements among five mammalian orders. Molecular Phylogenetics and Evolution. 65: 871-82. PMID 22929217 DOI: 10.1016/J.Ympev.2012.08.008  0.783
2012 Zhang Y, Hu F, Tang J. A mixture framework for inferring ancestral gene orders. Bmc Genomics. 13: S7. PMID 22369143 DOI: 10.1186/1471-2164-13-S1-S7  0.626
2011 Sakib MN, Tang J, Zheng WJ, Huang CT. Improving transmission efficiency of large sequence alignment/map (SAM) files. Plos One. 6: e28251. PMID 22164252 DOI: 10.1371/Journal.Pone.0028251  0.348
2011 Kang S, Tang J, Schaeffer SW, Bader DA. Rec-DCM-Eigen: reconstructing a less parsimonious but more accurate tree in shorter time. Plos One. 6: e22483. PMID 21887219 DOI: 10.1371/Journal.Pone.0022483  0.457
2011 Luo H, Friedman R, Tang J, Hughes AL. Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus. Molecular Biology and Evolution. 28: 2751-60. PMID 21531921 DOI: 10.1093/Molbev/Msr081  0.42
2011 Luo H, Tang J, Friedman R, Hughes AL. Ongoing purifying selection on intergenic spacers in group A streptococcus. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 343-8. PMID 21115137 DOI: 10.1016/J.Meegid.2010.11.005  0.379
2010 Asbury TM, Mitman M, Tang J, Zheng WJ. Genome3D: a viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. Bmc Bioinformatics. 11: 444. PMID 20813045 DOI: 10.1186/1471-2105-11-444  0.343
2010 Shi J, Zhang Y, Luo H, Tang J. Using jackknife to assess the quality of gene order phylogenies. Bmc Bioinformatics. 11: 168. PMID 20370914 DOI: 10.1186/1471-2105-11-168  0.616
2009 Luo H, Sun Z, Arndt W, Shi J, Friedman R, Tang J. Gene order phylogeny and the evolution of methanogens. Plos One. 4: e6069. PMID 19562076 DOI: 10.1371/Journal.Pone.0006069  0.745
2009 Yue F, Tang J. A space-efficient algorithm for three sequence alignment and ancestor inference. International Journal of Data Mining and Bioinformatics. 3: 192-204. PMID 19517989 DOI: 10.1504/IJDMB.2009.024851  0.485
2009 Zhang M, Arndt W, Tang J. An exact solver for the DCJ median problem. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 138-49. PMID 19209699  0.719
2009 Swenson KM, To Y, Tang J, Moret BM. Maximum independent sets of commuting and noninterfering inversions. Bmc Bioinformatics. 10: S6. PMID 19208163 DOI: 10.1186/1471-2105-10-S1-S6  0.337
2009 Yue F, Shi J, Tang J. Simultaneous phylogeny reconstruction and multiple sequence alignment. Bmc Bioinformatics. 10: S11. PMID 19208110 DOI: 10.1186/1471-2105-10-S1-S11  0.604
2008 Luo H, Shi J, Arndt W, Tang J, Friedman R. Gene order phylogeny of the genus Prochlorococcus. Plos One. 3: e3837. PMID 19050756 DOI: 10.1371/Journal.Pone.0003837  0.736
2008 Yue F, Zhang M, Tang J. Phylogenetic reconstruction from transpositions. Bmc Genomics. 9: S15. PMID 18831780 DOI: 10.1186/1471-2164-9-S2-S15  0.637
2008 Arndt W, Tang J. Improving reversal median computation using commuting reversals and cycle information. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 1079-92. PMID 18774904 DOI: 10.1089/Cmb.2008.0116  0.757
2008 Yue F, Cui L, dePamphilis CW, Moret BM, Tang J. Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat. Bmc Genomics. 9: S25. PMID 18366615 DOI: 10.1186/1471-2164-9-S1-S25  0.626
2006 Cui L, Leebens-Mack J, Wang LS, Tang J, Rymarquis L, Stern DB, dePamphilis CW. Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach. Bmc Evolutionary Biology. 6: 13. PMID 16469102 DOI: 10.1186/1471-2148-6-13  0.433
2003 Tang J, Moret BM. Scaling up accurate phylogenetic reconstruction from gene-order data. Bioinformatics (Oxford, England). 19: i305-12. PMID 12855474 DOI: 10.1093/Bioinformatics/Btg1042  0.448
2003 Moret BME, Tang J, Wang LS, Warnow T. Steps toward accurate reconstructions of phylogenies from gene-order data Journal of Computer and System Sciences. 65: 508-525. DOI: 10.1016/S0022-0000(02)00007-7  0.435
Show low-probability matches.