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Charles F. Baer, Ph.D - Publications

Affiliations: 
Biology University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Evolutionary Genetics
Website:
http://www.biology.ufl.edu/People/faculty/cbaer.aspx
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49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Mallard F, Noble L, Baer CF, Teotónio H. Variation in mutational (co)variances. G3 (Bethesda, Md.). PMID 36548954 DOI: 10.1093/g3journal/jkac335  0.431
2022 Saber S, Snyder M, Rajaei M, Baer CF. Mutation, selection, and the prevalence of the Caenorhabditis elegans heat-sensitive mortal germline phenotype. G3 (Bethesda, Md.). 12. PMID 35311992 DOI: 10.1093/g3journal/jkac063  0.324
2021 Gilbert KJ, Zdraljevic S, Cook DE, Cutter AD, Andersen EC, Baer CF. The distribution of mutational effects on fitness in Caenorhabditis elegans inferred from standing genetic variation. Genetics. PMID 34791202 DOI: 10.1093/genetics/iyab166  0.465
2021 Rajaei M, Saxena AS, Johnson LM, Snyder MC, Crombie TA, Tanny RE, Andersen EC, Joyner-Matos J, Baer CF. Mutability of mononucleotide repeats, not oxidative stress, explains the discrepancy between laboratory-accumulated mutations and the natural allele-frequency spectrum in . Genome Research. PMID 34404692 DOI: 10.1101/gr.275372.121  0.41
2021 Purkayastha P, Pendyala K, Saxena AS, Hakimjavadi H, Chamala S, Dixit P, Baer CF, Lele TP. Reverse plasticity underlies rapid evolution by clonal selection within populations of fibroblasts propagated on a novel soft substrate. Molecular Biology and Evolution. PMID 33871606 DOI: 10.1093/molbev/msab102  0.363
2020 Johnson LM, Smith OJ, Hahn DA, Baer CF. Short-term heritable variation overwhelms two hundred generations of mutational variance for metabolic traits in Caenorhabditis elegans. Evolution; International Journal of Organic Evolution. PMID 32989734 DOI: 10.1111/evo.14104  0.35
2019 Baer CF. Evolution: Environmental Dependence of the Mutational Process. Current Biology : Cb. 29: R415-R417. PMID 31163145 DOI: 10.1016/J.Cub.2019.04.049  0.461
2018 Shekhar Saxena A, Salomon MP, Matsuba C, Yeh SD, Baer CF. Evolution of the mutational process under relaxed selection in Caenorhabditis elegans. Molecular Biology and Evolution. PMID 30445510 DOI: 10.1093/Molbev/Msy213  0.521
2018 Crombie TA, Saber S, Saxena AS, Egan R, Baer CF. Head-to-head comparison of three experimental methods of quantifying competitive fitness in C. elegans. Plos One. 13: e0201507. PMID 30339672 DOI: 10.1371/Journal.Pone.0201507  0.357
2018 Johnson LM, Chandler LM, Davies SK, Baer CF. Network Architecture and Mutational Sensitivity of the Metabolome. Frontiers in Molecular Biosciences. 5: 69. PMID 30109234 DOI: 10.3389/Fmolb.2018.00069  0.42
2018 Yeh SD, Saxena AS, Crombie TA, Feistel D, Johnson LM, Lam I, Lam J, Saber S, Baer CF. The mutational decay of male-male and hermaphrodite-hermaphrodite competitive fitness in the androdioecious nematode C. elegans. Heredity. 120: 1-12. PMID 29234171 DOI: 10.1038/S41437-017-0003-8  0.438
2017 Teotónio H, Estes S, Phillips PC, Baer CF. Experimental Evolution with Caenorhabditis Nematodes. Genetics. 206: 691-716. PMID 28592504 DOI: 10.1534/Genetics.115.186288  0.415
2016 Reed LK, Baer CF, Edison AS. Considerations when choosing a genetic model organism for metabolomics studies. Current Opinion in Chemical Biology. 36: 7-14. PMID 28025166 DOI: 10.1016/J.Cbpa.2016.12.005  0.395
2016 Davies SK, Leroi A, Burt A, Bundy JG, Baer CF. The mutational structure of metabolism in Caenorhabditis elegans. Evolution; International Journal of Organic Evolution. PMID 27465022 DOI: 10.1111/Evo.13020  0.505
2016 Farhadifar R, Ponciano JM, Andersen EC, Needleman DJ, Baer CF. Mutation Is a Sufficient and Robust Predictor of Genetic Variation for Mitotic Spindle Traits in Caenorhabditis elegans. Genetics. PMID 27334268 DOI: 10.1534/Genetics.115.185736  0.587
2015 Andrew JR, Dossey MM, Garza VO, Keller-Pearson M, Baer CF, Joyner-Matos J. Abiotic stress does not magnify the deleterious effects of spontaneous mutations. Heredity. PMID 26103946 DOI: 10.1038/Hdy.2015.51  0.435
2015 Farhadifar R, Baer CF, Valfort AC, Andersen EC, Müller-Reichert T, Delattre M, Needleman DJ. Scaling, selection, and evolutionary dynamics of the mitotic spindle. Current Biology : Cb. 25: 732-40. PMID 25683802 DOI: 10.1016/J.Cub.2014.12.060  0.332
2015 Etienne V, Andersen EC, Ponciano JM, Blanton D, Cadavid A, Joyner-Matos J, Matsuba C, Tabman B, Baer CF. The red death meets the abdominal bristle: polygenic mutation for susceptibility to a bacterial pathogen in Caenorhabditis elegans. Evolution; International Journal of Organic Evolution. 69: 508-19. PMID 25495240 DOI: 10.1111/Evo.12585  0.552
2013 Joyner-Matos J, Hicks KA, Cousins D, Keller M, Denver DR, Baer CF, Estes S. Evolution of a higher intracellular oxidizing environment in Caenorhabditis elegans under relaxed selection. Plos One. 8: e65604. PMID 23776511 DOI: 10.1371/Journal.Pone.0065604  0.414
2013 Matsuba C, Ostrow DG, Salomon MP, Tolani A, Baer CF. Temperature, stress and spontaneous mutation in Caenorhabditis briggsae and Caenorhabditis elegans. Biology Letters. 9: 20120334. PMID 22875817 DOI: 10.1098/Rsbl.2012.0334  0.475
2012 Matsuba C, Lewis S, Ostrow DG, Salomon MP, Sylvestre L, Tabman B, Ungvari-Martin J, Baer CF. Invariance (?) of mutational parameters for relative fitness over 400 generations of mutation accumulation in Caenorhabditis elegans. G3 (Bethesda, Md.). 2: 1497-503. PMID 23275873 DOI: 10.1534/G3.112.003947  0.491
2012 Denver DR, Wilhelm LJ, Howe DK, Gafner K, Dolan PC, Baer CF. Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biology and Evolution. 4: 513-22. PMID 22436997 DOI: 10.1093/Gbe/Evs028  0.517
2011 Joyner-Matos J, Bean LC, Richardson HL, Sammeli T, Baer CF. No evidence of elevated germline mutation accumulation under oxidative stress in Caenorhabditis elegans. Genetics. 189: 1439-47. PMID 21979932 DOI: 10.1534/Genetics.111.133660  0.415
2011 Shaw FH, Baer CF. Fitness-dependent mutation rates in finite populations. Journal of Evolutionary Biology. 24: 1677-84. PMID 21635607 DOI: 10.1111/j.1420-9101.2011.02320.x  0.412
2010 Baer CF, Joyner-Matos J, Ostrow D, Grigaltchik V, Salomon MP, Upadhyay A. Rapid decline in fitness of mutation accumulation lines of gonochoristic (outcrossing) Caenorhabditis nematodes. Evolution; International Journal of Organic Evolution. 64: 3242-53. PMID 20649813 DOI: 10.1111/J.1558-5646.2010.01061.X  0.519
2010 Howe DK, Baer CF, Denver DR. High rate of large deletions in Caenorhabditis briggsae mitochondrial genome mutation processes. Genome Biology and Evolution. 2: 29-38. PMID 20333220 DOI: 10.1093/Gbe/Evp055  0.441
2010 Braendle C, Baer CF, Félix MA. Bias and evolution of the mutationally accessible phenotypic space in a developmental system. Plos Genetics. 6: e1000877. PMID 20300655 DOI: 10.1371/Journal.Pgen.1000877  0.503
2010 Baer CF, Denver DR. Spontaneous mutations decrease sensitivity of gene expression to random environmental variation in Caenorhabditis elegans. Plos One. 5: e8750. PMID 20090917 DOI: 10.1371/Journal.Pone.0008750  0.487
2009 Denver DR, Dolan PC, Wilhelm LJ, Sung W, Lucas-Lledó JI, Howe DK, Lewis SC, Okamoto K, Thomas WK, Lynch M, Baer CF. A genome-wide view of Caenorhabditis elegans base-substitution mutation processes. Proceedings of the National Academy of Sciences of the United States of America. 106: 16310-4. PMID 19805298 DOI: 10.1073/Pnas.0904895106  0.631
2009 Joyner-Matos J, Upadhyay A, Salomon MP, Grigaltchik V, Baer CF. Genetic (Co)variation for life span in rhabditid nematodes: role of mutation, selection, and history. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 64: 1134-45. PMID 19671885 DOI: 10.1093/Gerona/Glp112  0.51
2009 Salomon MP, Ostrow D, Phillips N, Blanton D, Bour W, Keller TE, Levy L, Sylvestre T, Upadhyay A, Baer CF. Comparing mutational and standing genetic variability for fitness and size in Caenorhabditis briggsae and C. elegans. Genetics. 183: 685-92, 1SI-19SI. PMID 19667133 DOI: 10.1534/Genetics.109.107383  0.589
2009 Phillips N, Salomon M, Custer A, Ostrow D, Baer CF. Spontaneous mutational and standing genetic (co)variation at dinucleotide microsatellites in Caenorhabditis briggsae and Caenorhabditis elegans. Molecular Biology and Evolution. 26: 659-69. PMID 19109257 DOI: 10.1093/Molbev/Msn287  0.572
2008 Baer CF. Quantifying the decanalizing effects of spontaneous mutations in rhabditid nematodes. The American Naturalist. 172: 272-81. PMID 18582167 DOI: 10.1086/589455  0.522
2008 Baer CF. Does mutation rate depend on itself. Plos Biology. 6: e52. PMID 18303954 DOI: 10.1371/Journal.Pbio.0060052  0.509
2007 Baer CF, Miyamoto MM, Denver DR. Mutation rate variation in multicellular eukaryotes: causes and consequences. Nature Reviews. Genetics. 8: 619-31. PMID 17637734 DOI: 10.1038/Nrg2158  0.485
2007 Ostrow D, Phillips N, Avalos A, Blanton D, Boggs A, Keller T, Levy L, Rosenbloom J, Baer CF. Mutational bias for body size in rhabditid nematodes. Genetics. 176: 1653-61. PMID 17483403 DOI: 10.1534/Genetics.107.074666  0.514
2007 Baer CF, Miyamoto MM, Denver DR. Reply to: Mutation rate variation in eukaryotes: Evolutionary implications of site-specific mechanisms [3] Nature Reviews Genetics. 8: 1P. DOI: 10.1038/nrg2158-c2  0.37
2007 Baer CF, Miyamoto MM, Denver DR. Reply to: Mutation rate variation in eukaryotes: Evolutionary implications of site-specific mechanisms [3] Nature Reviews Genetics. 8: 1P. DOI: 10.1038/Nrg2158-C2  0.461
2006 Baer CF, Phillips N, Ostrow D, Avalos A, Blanton D, Boggs A, Keller T, Levy L, Mezerhane E. Cumulative effects of spontaneous mutations for fitness in Caenorhabditis: role of genotype, environment and stress. Genetics. 174: 1387-95. PMID 16888328 DOI: 10.1534/Genetics.106.061200  0.513
2005 Fuller RC, Baer CF, Travis J. How and When Selection Experiments Might Actually be Useful. Integrative and Comparative Biology. 45: 391-404. PMID 21676785 DOI: 10.1093/Icb/45.3.391  0.634
2005 Baer CF, Shaw F, Steding C, Baumgartner M, Hawkins A, Houppert A, Mason N, Reed M, Simonelic K, Woodard W, Lynch M. Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proceedings of the National Academy of Sciences of the United States of America. 102: 5785-90. PMID 15809433 DOI: 10.1073/Pnas.0406056102  0.621
2004 Baer CF, Tripp DW, Bjorksten TA, Antolin MF. Phylogeography of a parasitoid wasp (Diaeretiella rapae): no evidence of host-associated lineages. Molecular Ecology. 13: 1859-69. PMID 15189209 DOI: 10.1111/J.1365-294X.2004.02196.X  0.574
2003 Baer CF, Lynch M. Correlated evolution of life-history with size at maturity in Daphnia pulicaria: patterns within and between populations. Genetical Research. 81: 123-32. PMID 12872914 DOI: 10.1017/S0016672303006098  0.596
2001 Black WC, Baer CF, Antolin MF, DuTeau NM. Population genomics: genome-wide sampling of insect populations. Annual Review of Entomology. 46: 441-69. PMID 11112176 DOI: 10.1146/Annurev.Ento.46.1.441  0.579
2000 Baer CF, Travis J, Higgins K. Experimental evolution in Heterandria formosa, a livebearing fish: group selection on population size. Genetical Research. 76: 169-78. PMID 11132410 DOI: 10.1017/S0016672300004687  0.56
2000 Baer CF, Travis J. Direct and correlated responses to artificial selection on acute thermal stress tolerance in a livebearing fish. Evolution; International Journal of Organic Evolution. 54: 238-44. PMID 10937200 DOI: 10.1111/J.0014-3820.2000.Tb00024.X  0.572
1999 Travis J, McManus MG, Baer CF. Sources of variation in physiological phenotypes and their evolutionary significance American Zoologist. 39: 422-433. DOI: 10.1093/Icb/39.2.422  0.593
1998 Baer CF. SPECIES-WIDE POPULATION STRUCTURE IN A SOUTHEASTERN U.S. FRESHWATER FISH, HETERANDRIA FORMOSA: GENE FLOW AND BIOGEOGRAPHY. Evolution; International Journal of Organic Evolution. 52: 183-193. PMID 28568144 DOI: 10.1111/J.1558-5646.1998.Tb05151.X  0.408
1998 Baer CF. Population structure in a south-eastern US freshwater fish, Heterandria formosa. II. Gene flow and biogeography within the St. Johns River drainage Heredity. 81: 404-411. DOI: 10.1046/J.1365-2540.1998.00410.X  0.325
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