Nicole Valenzuela, Ph.D. - Publications

Affiliations: 
Iowa State University, Ames, IA, United States 

67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gessler TB, Wu Z, Valenzuela N. Transcriptomic thermal plasticity underlying gonadal development in a turtle with ZZ/ZW sex chromosomes despite canalized genotypic sex determination. Ecology and Evolution. 13: e9854. PMID 36844670 DOI: 10.1002/ece3.9854  0.401
2022 Montiel EE, Badenhorst D, Lee L, Valenzuela N. Evolution and dosage compensation of nucleolar organizing regions (NORs) mediated by mobile elements in turtles with female (ZZ/ZW) but not with male (XX/XY) heterogamety. Journal of Evolutionary Biology. PMID 35877473 DOI: 10.1111/jeb.14064  0.352
2021 Bista B, Wu Z, Literman R, Valenzuela N. Thermosensitive sex chromosome dosage compensation in ZZ/ZW softshell turtles, . Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200101. PMID 34304598 DOI: 10.1098/rstb.2020.0101  0.343
2021 Kratochvíl L, Stöck M, Rovatsos M, Bullejos M, Herpin A, Jeffries DL, Peichel CL, Perrin N, Valenzuela N, Pokorná MJ. Expanding the classical paradigm: what we have learnt from vertebrates about sex chromosome evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200097. PMID 34304593 DOI: 10.1098/rstb.2020.0097  0.33
2021 Stöck M, Kratochvíl L, Kuhl H, Rovatsos M, Evans BJ, Suh A, Valenzuela N, Veyrunes F, Zhou Q, Gamble T, Capel B, Schartl M, Guiguen Y. A brief review of vertebrate sex evolution with a pledge for integrative research: towards ''. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200426. PMID 34247497 DOI: 10.1098/rstb.2020.0426  0.368
2021 Valenzuela N. Podocnemis expansa Turtles Hint to a Unifying Explanation for the Evolution of Temperature-Dependent Sex Determination in Long-Lived and Short-Lived Vertebrates. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 1-15. PMID 34004596 DOI: 10.1159/000515208  0.321
2020 Lee LS, Navarro-Domínguez BM, Wu Z, Montiel EE, Badenhorst D, Bista B, Gessler TB, Valenzuela N. Karyotypic Evolution of Sauropsid Vertebrates Illuminated by Optical and Physical Mapping of the Painted Turtle and Slider Turtle Genomes. Genes. 11. PMID 32806747 DOI: 10.3390/Genes11080928  0.344
2020 Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... ... Valenzuela N, et al. The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32760000 DOI: 10.1038/S41586-020-2561-9  0.333
2020 Bista B, Valenzuela N. Turtle Insights into the Evolution of the Reptilian Karyotype and the Genomic Architecture of Sex Determination. Genes. 11. PMID 32290488 DOI: 10.3390/Genes11040416  0.436
2020 Mizoguchi B, Valenzuela N. Alternative splicing and thermosensitive expression of during urogenital development in the painted turtle, . Peerj. 8: e8639. PMID 32219017 DOI: 10.7717/Peerj.8639  0.46
2019 Lee L, Montiel EE, Valenzuela N. Discovery of Putative XX/XY Male Heterogamety in Emydura subglobosa Turtles Exposes a Novel Trajectory of Sex Chromosome Evolution in Emydura. Cytogenetic and Genome Research. PMID 31394537 DOI: 10.1159/000501891  0.429
2019 Valenzuela N, Literman R, Neuwald JL, Mizoguchi B, Iverson JB, Riley JL, Litzgus JD. Extreme thermal fluctuations from climate change unexpectedly accelerate demographic collapse of vertebrates with temperature-dependent sex determination. Scientific Reports. 9: 4254. PMID 30862793 DOI: 10.1038/S41598-019-40597-4  0.394
2019 Lee L, Montiel EE, Navarro-Domínguez BM, Valenzuela N. Chromosomal Rearrangements during Turtle Evolution Altered the Synteny of Genes Involved in Vertebrate Sex Determination. Cytogenetic and Genome Research. PMID 30808820 DOI: 10.1159/000497302  0.43
2019 Escalona T, Valenzuela N, Adams DC. Do Local Environmental Factors and Lunar Cycle Influence Timing and Synchrony of Oviposition of a Turtle with Strict Nocturnal Nesting? Diversity. 11: 78. DOI: 10.3390/D11050078  0.55
2018 Radhakrishnan S, Literman R, Neuwald JL, Valenzuela N. Thermal Response of Epigenetic Genes Informs Turtle Sex Determination with and without Sex Chromosomes. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. PMID 30278451 DOI: 10.1159/000492188  0.375
2018 O'Connor RE, Romanov MN, Kiazim LG, Barrett PM, Farré M, Damas J, Ferguson-Smith M, Valenzuela N, Larkin DM, Griffin DK. Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs. Nature Communications. 9: 1883. PMID 29784931 DOI: 10.1038/S41467-018-04267-9  0.378
2017 Literman R, Burrett A, Bista B, Valenzuela N. Putative Independent Evolutionary Reversals from Genotypic to Temperature-Dependent Sex Determination are Associated with Accelerated Evolution of Sex-Determining Genes in Turtles. Journal of Molecular Evolution. PMID 29192334 DOI: 10.1007/S00239-017-9820-X  0.418
2017 Radhakrishnan S, Valenzuela N. Chromosomal context affects the molecular evolution of sex-linked genes and their autosomal counterparts in turtles and other vertebrates. The Journal of Heredity. PMID 29036698 DOI: 10.1093/Jhered/Esx082  0.444
2017 Tang WQ, Mu Y, Valenzuela N, Du WG. Effects of Incubation Temperature on the Expression of Sex-Related Genes in the Chinese Pond Turtle, Mauremys reevesii. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. PMID 28848222 DOI: 10.1159/000479360  0.467
2017 Radhakrishnan S, Literman R, Mizoguchi B, Valenzuela N. MeDIP-seq and nCpG analyses illuminate sexually dimorphic methylation of gonadal development genes with high historic methylation in turtle hatchlings with temperature-dependent sex determination. Epigenetics & Chromatin. 10: 28. PMID 28533820 DOI: 10.1186/S13072-017-0136-2  0.367
2017 Radhakrishnan S, Literman R, Neuwald J, Severin A, Valenzuela N. Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development. Plos One. 12: e0172044. PMID 28296881 DOI: 10.1371/Journal.Pone.0172044  0.428
2017 Literman R, Radhakrishnan S, Tamplin J, Burke R, Dresser C, Valenzuela N. Development of sexing primers in Glyptemys insculpta and Apalone spinifera turtles uncovers an XX/XY sex-determining system in the critically-endangered bog turtle Glyptemys muhlenbergii Conservation Genetics Resources. 9: 651-658. DOI: 10.1007/S12686-017-0711-7  0.445
2017 Escalona T, Adams DC, Valenzuela N. A lengthy solution to the optimal propagule size problem in the large-bodied South American freshwater turtle, Podocnemis unifilis Evolutionary Ecology. 32: 29-41. DOI: 10.1007/S10682-017-9922-3  0.562
2016 Sabath N, Itescu Y, Feldman A, Meiri S, Mayrose I, Valenzuela N. Sex determination, longevity, and the birth and death of reptilian species. Ecology and Evolution. 6: 5207-20. PMID 27551377 DOI: 10.1002/Ece3.2277  0.388
2016 Montiel EE, Badenhorst D, Lee LS, Literman R, Trifonov V, Valenzuela N. Cytogenetic Insights into the Evolution of Chromosomes and Sex Determination Reveal Striking Homology of Turtle Sex Chromosomes to Amphibian Autosomes. Cytogenetic and Genome Research. PMID 27423490 DOI: 10.1159/000447478  0.395
2016 Mizoguchi BA, Valenzuela N. Ecotoxicological Perspectives of Sex Determination. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. PMID 27022970 DOI: 10.1159/000444770  0.404
2016 Montiel EE, Badenhorst D, Tamplin J, Burke RL, Valenzuela N. Discovery of the youngest sex chromosomes reveals first case of convergent co-option of ancestral autosomes in turtles. Chromosoma. PMID 26842819 DOI: 10.1007/S00412-016-0576-7  0.381
2016 Gómez-Saldarriaga C, Valenzuela N, Ceballos CP. Effects of Incubation Temperature on Sex Determination in the Endangered Magdalena River Turtle,Podocnemis lewyana Chelonian Conservation and Biology. 15: 43-53. DOI: 10.2744/Ccb-1170.1  0.379
2015 Pennell MW, Kirkpatrick M, Otto SP, Vamosi JC, Peichel CL, Valenzuela N, Kitano J. Y fuse? Sex chromosome fusions in fishes and reptiles. Plos Genetics. 11: e1005237. PMID 25993542 DOI: 10.1371/Journal.Pgen.1005237  0.311
2015 Mu Y, Zhao B, Tang WQ, Sun BJ, Zeng ZG, Valenzuela N, Du WG. Temperature-dependent sex determination ruled out in the chinese soft-shelled turtle (Pelodiscus sinensis) via molecular cytogenetics and incubation experiments across populations. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 9: 111-7. PMID 25676546 DOI: 10.1159/000373903  0.422
2014 Janes DE, Organ CL, Stiglec R, O'Meally D, Sarre SD, Georges A, Graves JA, Valenzuela N, Literman RA, Rutherford K, Gemmell N, Iverson JB, Tamplin JW, Edwards SV, Ezaz T. Molecular evolution of Dmrt1 accompanies change of sex-determining mechanisms in reptilia. Biology Letters. 10: 20140809. PMID 25540158 DOI: 10.1098/Rsbl.2014.0809  0.464
2014 Valenzuela N, Badenhorst D, Montiel EE, Literman R. Molecular cytogenetic search for cryptic sex chromosomes in painted turtles Chrysemys picta. Cytogenetic and Genome Research. 144: 39-46. PMID 25170556 DOI: 10.1159/000366076  0.433
2014 Bachtrog D, Mank JE, Peichel CL, Kirkpatrick M, Otto SP, Ashman TL, Hahn MW, Kitano J, Mayrose I, Ming R, Perrin N, Ross L, Valenzuela N, Vamosi JC. Sex determination: why so many ways of doing it? Plos Biology. 12: e1001899. PMID 24983465 DOI: 10.1371/Journal.Pbio.1001899  0.467
2014 Literman R, Badenhorst D, Valenzuela N. qPCR-based molecular sexing by copy number variation in rRNA genes and its utility for sex identification in soft-shell turtles Methods in Ecology and Evolution. 5: 872-880. DOI: 10.1111/2041-210X.12228  0.456
2014 Ashman TL, Bachtrog D, Blackmon H, Goldberg EE, Hahn MW, Kirkpatrick M, Kitano J, Mank JE, Mayrose I, Ming R, Otto SP, Peichel CL, Pennell MW, Perrin N, Ross L, ... Valenzuela N, et al. Tree of Sex: A database of sexual systems Scientific Data. 1. DOI: 10.1038/Sdata.2014.15  0.305
2014 Ceballos CP, Hernández OE, Valenzuela N. Divergent Sex-Specific Plasticity in Long-Lived Vertebrates with Contrasting Sexual Dimorphism Evolutionary Biology. 41: 81-98. DOI: 10.1007/S11692-013-9249-0  0.449
2013 Weiner SA, Galbraith DA, Adams DC, Valenzuela N, Noll FB, Grozinger CM, Toth AL. A survey of DNA methylation across social insect species, life stages, and castes reveals abundant and caste-associated methylation in a primitively social wasp. Die Naturwissenschaften. 100: 795-9. PMID 23793297 DOI: 10.1007/S00114-013-1064-Z  0.496
2013 Janes DE, Elsey RM, Langan EM, Valenzuela N, Edwards SV. Sex-biased expression of sex-differentiating genes FOXL2 and FGF9 in American alligators, alligator Mississippiensis. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 7: 253-60. PMID 23689672 DOI: 10.1159/000350787  0.352
2013 Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28  0.715
2013 Badenhorst D, Stanyon R, Engstrom T, Valenzuela N. A ZZ/ZW microchromosome system in the spiny softshell turtle, Apalone spinifera, reveals an intriguing sex chromosome conservation in Trionychidae. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 137-47. PMID 23512312 DOI: 10.1007/S10577-013-9343-2  0.443
2013 Valenzuela N, Neuwald JL, Literman R. Transcriptional evolution underlying vertebrate sexual development. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 242: 307-19. PMID 23108853 DOI: 10.1002/Dvdy.23897  0.454
2013 Ceballos CP, Adams DC, Iverson JB, Valenzuela N. Phylogenetic Patterns of Sexual Size Dimorphism in Turtles and Their Implications for Rensch's Rule Evolutionary Biology. 40: 194-208. DOI: 10.1007/S11692-012-9199-Y  0.602
2011 Bachtrog D, Kirkpatrick M, Mank JE, McDaniel SF, Pires JC, Rice W, Valenzuela N. Are all sex chromosomes created equal? Trends in Genetics : Tig. 27: 350-7. PMID 21962970 DOI: 10.1016/J.Tig.2011.05.005  0.42
2011 Valenzuela N, Adams DC. Chromosome number and sex determination coevolve in turtles. Evolution; International Journal of Organic Evolution. 65: 1808-13. PMID 21644965 DOI: 10.1111/J.1558-5646.2011.01258.X  0.616
2011 Ceballos CP, Valenzuela N. The Role of Sex-specific Plasticity in Shaping Sexual Dimorphism in a Long-lived Vertebrate, the Snapping Turtle Chelydra serpentina Evolutionary Biology. 38: 163-181. DOI: 10.1007/S11692-011-9117-8  0.436
2010 Valenzuela N. Multivariate expression analysis of the gene network underlying sexual development in turtle embryos with temperature-dependent and genotypic sex determination. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 4: 39-49. PMID 20110645 DOI: 10.1159/000277935  0.419
2009 Valenzuela N. Co-evolution of genomic structure and selective forces underlying sexual development and reproduction. Cytogenetic and Genome Research. 127: 232-41. PMID 20224244 DOI: 10.1159/000295809  0.431
2009 Valenzuela N. Egg incubation and collection of painted turtle embryos. Cold Spring Harbor Protocols. 2009: pdb.prot5238. PMID 20147203 DOI: 10.1101/Pdb.Prot5238  0.319
2009 Valenzuela N. The painted turtle, Chrysemys picta: a model system for vertebrate evolution, ecology, and human health. Cold Spring Harbor Protocols. 2009: pdb.emo124. PMID 20147199 DOI: 10.1101/Pdb.Emo124  0.365
2009 Escalona T, Valenzuela N, Adams DC. Nesting ecology in the freshwater turtle Podocnemis unifilis: Spatiotemporal patterns and inferred explanations Functional Ecology. 23: 826-835. DOI: 10.1111/J.1365-2435.2009.01562.X  0.559
2008 Valenzuela N. Evolution of the gene network underlying gonadogenesis in turtles with temperature-dependent and genotypic sex determination. Integrative and Comparative Biology. 48: 476-85. PMID 21669808 DOI: 10.1093/Icb/Icn031  0.451
2008 Janes DE, Organ C, Valenzuela N. New resources inform study of genome size, content, and organization in nonavian reptiles. Integrative and Comparative Biology. 48: 447-53. PMID 21669805 DOI: 10.1093/Icb/Icn010  0.341
2008 Martinez PA, Ezaz T, Valenzuela N, Georges A, Marshall Graves JA. An XX/XY heteromorphic sex chromosome system in the Australian chelid turtle Emydura macquarii: a new piece in the puzzle of sex chromosome evolution in turtles. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 815-25. PMID 18679815 DOI: 10.1007/S10577-008-1228-4  0.375
2008 Valenzuela N. Sexual development and the evolution of sex determination. Sexual Development : Genetics, Molecular Biology, Evolution, Endocrinology, Embryology, and Pathology of Sex Determination and Differentiation. 2: 64-72. PMID 18577873 DOI: 10.1159/000129691  0.45
2008 Valenzuela N. Relic thermosensitive gene expression in a turtle with genotypic sex determination. Evolution; International Journal of Organic Evolution. 62: 234-40. PMID 18053078 DOI: 10.1111/J.1558-5646.2007.00279.X  0.447
2007 Valenzuela N, Shikano T. Embryological ontogeny of aromatase gene expression in Chrysemys picta and Apalone mutica turtles: comparative patterns within and across temperature-dependent and genotypic sex-determining mechanisms. Development Genes and Evolution. 217: 55-62. PMID 17021865 DOI: 10.1007/S00427-006-0106-3  0.435
2006 Valenzuela N, LeClere A, Shikano T. Comparative gene expression of steroidogenic factor 1 in Chrysemys picta and Apalone mutica turtles with temperature-dependent and genotypic sex determination. Evolution & Development. 8: 424-32. PMID 16925678 DOI: 10.1111/J.1525-142X.2006.00116.X  0.43
2006 Ezaz T, Valenzuela N, Grützner F, Miura I, Georges A, Burke RL, Graves JA. An XX/XY sex microchromosome system in a freshwater turtle, Chelodina longicollis (Testudines: Chelidae) with genetic sex determination. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 14: 139-50. PMID 16544188 DOI: 10.1007/S10577-006-1029-6  0.406
2004 Valenzuela N, Adams DC, Bowden RM, Gauger AC. Geometric Morphometric Sex Estimation for Hatchling Turtles: A Powerful Alternative for Detecting Subtle Sexual Shape Dimorphism Copeia. 2004: 735-742. DOI: 10.1643/Ch-03-248R1  0.67
2004 Valenzuela N, Adams DC, Bowden RM, Gauger AC. Geometric morphometric sex estimation for hatchling turtles: A powerful alternative for detecting subtle sexual shape dimorphism Copeia. 735-742.  0.471
2003 Valenzuela N, Adams DC, Janzen FJ. Pattern does not equal process: exactly when is sex environmentally determined? The American Naturalist. 161: 676-83. PMID 12776892 DOI: 10.1086/368292  0.681
2001 Valenzuela N. Maternal effects on life-history traits in the amazonian giant river turtle Podocnemis expansa Journal of Herpetology. 35: 368-378. DOI: 10.2307/1565954  0.429
2001 Morjan CL, Valenzuela N. Is ground-nuzzling by female turtles associated with soil surface temperatures? Journal of Herpetology. 35: 668-672. DOI: 10.2307/1565908  0.706
2001 Valenzuela N. Constant, shift, and natural temperature effects on sex determination in Podocnemis expansa turtles Ecology. 82: 3010-3024. DOI: 10.1890/0012-9658(2001)082[3010:Csante]2.0.Co;2  0.433
2001 Valenzuela N, Janzen FJ. Nest-site philopatry and the evolution of temperature-dependent sex determination Evolutionary Ecology Research. 3: 779-794.  0.534
2000 Valenzuela N. Multiple paternity in side-neck turtles Podocnemis expansa: evidence from microsatellite DNA data. Molecular Ecology. 9: 99-105. PMID 10652079 DOI: 10.1046/J.1365-294X.2000.00806.X  0.344
1997 Adams DC, Janson CH, Slobodkin LB, Valenzuela N. An "audience effect" for ecological terminology: use and misuse of jargon Oikos. 80: 632-636. DOI: 10.2307/3546641  0.496
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