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Scott A. Rifkin, Ph.D. - Publications

Affiliations: 
Biological Sciences University of California, San Diego, La Jolla, CA 
Website:
http://www.biology.ucsd.edu/labs/rifkin/index.html
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Taton A, Erikson C, Yang Y, Rubin BE, Rifkin SA, Golden JW, Golden SS. The circadian clock and darkness control natural competence in cyanobacteria. Nature Communications. 11: 1688. PMID 32245943 DOI: 10.1038/S41467-020-15384-9  0.405
2018 Welkie DG, Rubin BE, Chang YG, Diamond S, Rifkin SA, LiWang A, Golden SS. Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA. Proceedings of the National Academy of Sciences of the United States of America. PMID 29991601 DOI: 10.1073/Pnas.1802940115  0.346
2018 Rubin BE, Huynh TN, Welkie DG, Diamond S, Simkovsky R, Pierce EC, Taton A, Lowe LC, Lee JJ, Rifkin SA, Woodward JJ, Golden SS. High-throughput interaction screens illuminate the role of c-di-AMP in cyanobacterial nighttime survival. Plos Genetics. 14: e1007301. PMID 29608558 DOI: 10.1371/Journal.Pgen.1007301  0.307
2017 Stockwell SR, Rifkin SA. A living vector field reveals constraints on galactose network induction in yeast. Molecular Systems Biology. 13: 908. PMID 28137775 DOI: 10.15252/Msb.20167323  0.748
2016 Du L, Tracy S, Rifkin SA. Mutagenesis of GATA motifs controlling the endoderm regulator elt-2 reveals distinct dominant and secondary cis-regulatory elements. Developmental Biology. 412: 160-70. PMID 26896592 DOI: 10.1016/J.Ydbio.2016.02.013  0.646
2015 Maduro MF, Broitman-Maduro G, Choi H, Carranza F, Wu AC, Rifkin SA. MED GATA factors promote robust development of the C. elegans endoderm. Developmental Biology. 404: 66-79. PMID 25959238 DOI: 10.1016/J.Ydbio.2015.04.025  0.415
2015 Stockwell SR, Landry CR, Rifkin SA. The yeast galactose network as a quantitative model for cellular memory. Molecular Biosystems. 11: 28-37. PMID 25328105 DOI: 10.1039/C4Mb00448E  0.722
2012 Landry CR, Rifkin SA. The genotype-phenotype maps of systems biology and quantitative genetics: distinct and complementary. Advances in Experimental Medicine and Biology. 751: 371-98. PMID 22821467 DOI: 10.1007/978-1-4614-3567-9_17  0.547
2010 Landry CR, Rifkin SA. Chromatin regulators shape the genotype-phenotype map. Molecular Systems Biology. 6: 434. PMID 21119628 DOI: 10.1038/Msb.2010.97  0.59
2010 Raj A, Rifkin SA, Andersen E, van Oudenaarden A. Variability in gene expression underlies incomplete penetrance. Nature. 463: 913-8. PMID 20164922 DOI: 10.1038/Nature08781  0.754
2008 Raj A, van den Bogaard P, Rifkin SA, van Oudenaarden A, Tyagi S. Imaging individual mRNA molecules using multiple singly labeled probes. Nature Methods. 5: 877-9. PMID 18806792 DOI: 10.1038/nmeth.1253  0.607
2008 Gilad Y, Rifkin SA, Pritchard JK. Revealing the architecture of gene regulation: the promise of eQTL studies. Trends in Genetics : Tig. 24: 408-15. PMID 18597885 DOI: 10.1016/J.Tig.2008.06.001  0.528
2007 Landry CR, Lemos B, Rifkin SA, Dickinson WJ, Hartl DL. Genetic properties influencing the evolvability of gene expression. Science (New York, N.Y.). 317: 118-21. PMID 17525304 DOI: 10.1126/Science.1140247  0.723
2006 Gilad Y, Oshlack A, Rifkin SA. Natural selection on gene expression. Trends in Genetics : Tig. 22: 456-61. PMID 16806568 DOI: 10.1016/J.Tig.2006.06.002  0.516
2005 Rifkin SA, Houle D, Kim J, White KP. A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression. Nature. 438: 220-3. PMID 16281035 DOI: 10.1038/Nature04114  0.743
2005 Gilad Y, Rifkin SA, Bertone P, Gerstein M, White KP. Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Research. 15: 674-80. PMID 15867429 DOI: 10.1101/Gr.3335705  0.74
2005 Carriero N, Osier MV, Cheung KH, Miller PL, Gerstein M, Zhao H, Wu B, Rifkin S, Chang J, Zhang H, White K, Williams K, Schultz M. A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies. Journal of the American Medical Informatics Association : Jamia. 12: 90-8. PMID 15492032 DOI: 10.1197/Jamia.M1571  0.499
2004 Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science (New York, N.Y.). 306: 655-60. PMID 15499012 DOI: 10.1126/Science.1101312  0.706
2004 Gu Z, Rifkin SA, White KP, Li WH. Duplicate genes increase gene expression diversity within and between species. Nature Genetics. 36: 577-9. PMID 15122255 DOI: 10.1038/Ng1355  0.632
2003 Rifkin SA, Kim J, White KP. Evolution of gene expression in the Drosophila melanogaster subgroup. Nature Genetics. 33: 138-44. PMID 12548287 DOI: 10.1038/Ng1086  0.766
2002 Rifkin SA, Kim J. Geometry of gene expression dynamics. Bioinformatics (Oxford, England). 18: 1176-83. PMID 12217909 DOI: 10.1093/Bioinformatics/18.9.1176  0.664
2000 Rifkin SA, Atteson K, Kim J. Constraint structure analysis of gene expression. Functional & Integrative Genomics. 1: 174-85. PMID 11793235 DOI: 10.1007/S101420000018  0.711
1999 White KP, Rifkin SA, Hurban P, Hogness DS. Microarray analysis of Drosophila development during metamorphosis. Science (New York, N.Y.). 286: 2179-84. PMID 10591654 DOI: 10.1126/Science.286.5447.2179  0.767
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