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Alan Filipski, Ph. D. - Publications

Affiliations: 
Center for Evolutionary Medicine and Informatics Arizona State University, Tempe, AZ, United States 
Area:
Comparative Genomics, Molecular Clocks
Website:
http://www.kumarlab.net/personnel/filipski_alan.html

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Filipski A, Tamura K, Billing-Ross P, Murillo O, Kumar S. Phylogenetic placement of metagenomic reads using the minimum evolution principle. Bmc Genomics. 16: S13. PMID 25923672 DOI: 10.1186/1471-2164-16-S1-S13  0.554
2015 Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. A Protocol for Diagnosing the Effect of Calibration Priors on Posterior Time Estimates: A Case Study for the Cambrian Explosion of Animal Phyla. Molecular Biology and Evolution. 32: 1907-12. PMID 25808541 DOI: 10.1093/Molbev/Msv075  0.497
2014 Filipski A, Murillo O, Freydenzon A, Tamura K, Kumar S. Prospects for building large timetrees using molecular data with incomplete gene coverage among species. Molecular Biology and Evolution. 31: 2542-50. PMID 24974376 DOI: 10.1093/Molbev/Msu200  0.539
2014 Kumar S, Filipski A. Sequence Distance Measures Dictionary of Bioinformatics and Computational Biology. DOI: 10.1002/9780471650126.Dob0666.Pub2  0.361
2014 Kumar S, Filipski A. Molecular Clock (Evolutionary Clock, Rate of Evolution) Dictionary of Bioinformatics and Computational Biology. DOI: 10.1002/9780471650126.Dob0452.Pub2  0.304
2013 Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution. 30: 2725-9. PMID 24132122 DOI: 10.1093/Molbev/Mst197  0.533
2012 Tamura K, Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. Estimating divergence times in large molecular phylogenies. Proceedings of the National Academy of Sciences of the United States of America. 109: 19333-8. PMID 23129628 DOI: 10.1073/Pnas.1213199109  0.562
2012 Kumar S, Filipski AJ, Battistuzzi FU, Kosakovsky Pond SL, Tamura K. Statistics and truth in phylogenomics. Molecular Biology and Evolution. 29: 457-72. PMID 21873298 DOI: 10.1093/molbev/msr202  0.508
2011 Kumar S, Dudley JT, Filipski A, Liu L. Phylomedicine: an evolutionary telescope to explore and diagnose the universe of disease mutations. Trends in Genetics : Tig. 27: 377-86. PMID 21764165 DOI: 10.1016/J.Tig.2011.06.004  0.538
2010 Battistuzzi FU, Filipski A, Hedges SB, Kumar S. Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals. Molecular Biology and Evolution. 27: 1289-300. PMID 20093431 DOI: 10.1093/Molbev/Msq014  0.544
2009 Kumar S, Suleski MP, Markov GJ, Lawrence S, Marco A, Filipski AJ. Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations. Genome Research. 19: 1562-9. PMID 19546171 DOI: 10.1101/Gr.091991.109  0.439
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Filipski A, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.555
2007 Kumar S, Filipski A. Multiple sequence alignment: in pursuit of homologous DNA positions. Genome Research. 17: 127-35. PMID 17272647 DOI: 10.1101/Gr.5232407  0.557
2005 Kumar S, Filipski A, Swarna V, Walker A, Hedges SB. Placing confidence limits on the molecular age of the human-chimpanzee divergence. Proceedings of the National Academy of Sciences of the United States of America. 102: 18842-7. PMID 16365310 DOI: 10.1073/Pnas.0509585102  0.53
2002 Jiang Z, Melville JS, Cao H, Kumar S, Filipski A, Gibbins AM. Measuring conservation of contiguous sets of autosomal markers on bovine and porcine genomes in relation to the map of the human genome. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 45: 769-76. PMID 12175081 DOI: 10.1139/G02-038  0.504
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