Ted Cybulski - Related publications

Affiliations: 
2012-2017 Northwestern University, Evanston, IL 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Lee H, Wiegand DJ, Griswold K, Punthambaker S, Chun H, Kohman RE, Church GM. Photon-directed multiplexed enzymatic DNA synthesis for molecular digital data storage. Nature Communications. 11: 5246. PMID 33067441 DOI: 10.1038/s41467-020-18681-5   
2020 Geng H, Yin Z, Zhou C, Guo C. Construction of a Simple and Intelligent DNA-based Computing System for Multiplexing Logic Operations. Acta Biomaterialia. PMID 33035692 DOI: 10.1016/j.actbio.2020.09.054   
2020 Rodriguez J, Mosquera J, Learte-Aymamı S, Vázquez ME, Mascareñas JL. Stimuli-Responsive DNA Binding by Synthetic Systems. Accounts of Chemical Research. PMID 32997936 DOI: 10.1021/acs.accounts.0c00415   
2020 Li T, Shen X, Duan X. A portable nucleic acid extraction system based on gigahertz acoustic tweezers. Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference. 2020: 6147-6150. PMID 33019374 DOI: 10.1109/EMBC44109.2020.9176175   
2020 Zhou W, Sun J, Li X. Low-Cost Quantitative Photothermal Genetic Detection of Pathogens on a Paper Hybrid Device Using a Thermometer. Analytical Chemistry. PMID 33059447 DOI: 10.1021/acs.analchem.0c03700   
2020 Wang L, Song K, Qu Y, Chang Y, Li Z, Dong C, Liu M, Brennan J, Li Y. Engineering Micrometer-sized DNA Tracks for High-Speed DNA Synthesis and Biosensing. Angewandte Chemie (International Ed. in English). PMID 33007137 DOI: 10.1002/anie.202010693   
2020 Ouaray Z, Benner SA, Georgiadis MM, Richards NGJ. Building better DNA polymerases: Engineering the replication of expanded genetic alphabets. The Journal of Biological Chemistry. PMID 33004440 DOI: 10.1074/jbc.REV120.013745   
2020 Furtwängler A, Neukamm J, Böhme L, Reiter E, Vollstedt M, Arora N, Singh P, Cole ST, Knauf S, Calvignac-Spencer S, Krause-Kyora B, Krause J, Schuenemann VJ, Herbig A. Comparison of target enrichment strategies for ancient pathogen DNA. Biotechniques. PMID 33135465 DOI: 10.2144/btn-2020-0100   
2020 Bhatia DD, Wunder C, Johannes L. Self-assembled, programmable DNA nanodevices for biological and biomedical applications. Chembiochem : a European Journal of Chemical Biology. PMID 32961015 DOI: 10.1002/cbic.202000372   
2020 Hass KN, Bao M, He Q, Liu L, He J, Park M, Qin P, Du K. Integrated Micropillar Polydimethylsiloxane Accurate CRISPR Detection System for Viral DNA Sensing. Acs Omega. 5: 27433-27441. PMID 33134706 DOI: 10.1021/acsomega.0c03917   
2020 Guo Y, Cao Q, Feng Q. Catalytic hairpin assembly-triggered DNA walker for electrochemical sensing of tumor exosomes sensitized with Ag@C core-shell nanocomposites. Analytica Chimica Acta. 1135: 55-63. PMID 33070859 DOI: 10.1016/j.aca.2020.08.036   
2020 Gao J, Wu L, Yang D, Gong W, Wang J. A one-pot CRISPR/Cas9-typing PCR for DNA Detection and genotyping. The Journal of Molecular Diagnostics : Jmd. PMID 33127524 DOI: 10.1016/j.jmoldx.2020.10.004   
2020 Yang Z, Quan Z, Chua T, Li L, Zhang Y, Babajanian S, Buongiorno F, Noce ID, Colombo L, Newmaster S, Chua T, Chang P, Swanson G, Lu Z. Field Identification of Matricaria chamomilla using a Portable qPCR System. Journal of Visualized Experiments : Jove. PMID 33104062 DOI: 10.3791/60940   
2020 Doroschak K, Zhang K, Queen M, Mandyam A, Strauss K, Ceze L, Nivala J. Rapid and robust assembly and decoding of molecular tags with DNA-based nanopore signatures. Nature Communications. 11: 5454. PMID 33144581 DOI: 10.1038/s41467-020-19151-8   
2020 Ramos-Sono D, Laureano R, Rueda D, Gilman RH, La Rosa A, Ruiz J, León R, Sheen P, Zimic M. An electrochemical biosensor for the detection of Mycobacterium tuberculosis DNA from sputum and urine samples. Plos One. 15: e0241067. PMID 33112923 DOI: 10.1371/journal.pone.0241067   
2020 Sui Z, An R, Komiyama M, Liang X. Stepwise strategy for one-pot synthesis of single-stranded DNA rings from multiple short fragments. Chembiochem : a European Journal of Chemical Biology. PMID 33124728 DOI: 10.1002/cbic.202000738   
2020 Heintz N, Gong S. Growth of and Preparation of DNA. Cold Spring Harbor Protocols. 2020: pdb.prot098145. PMID 33004551 DOI: 10.1101/pdb.prot098145   
2020 Schulte KQ, Hewitt FC, Manley TE, Reed AJ, Baniasad M, Albright NC, Powals ME, LeSassier DS, Smith AR, Zhang L, Allen LW, Ludolph BC, Weber KL, Woerner AE, Freitas MA, et al. Fractionation of DNA and protein from individual latent fingerprints for forensic analysis. Forensic Science International. Genetics. 50: 102405. PMID 33152624 DOI: 10.1016/j.fsigen.2020.102405   
2020 Liu C, Liu Y, Zhu E, Zhang Q, Wei X, Wang B. Cross-Inhibitor: a time-sensitive molecular circuit based on DNA strand displacement. Nucleic Acids Research. PMID 33045746 DOI: 10.1093/nar/gkaa835   
2020 Zhang M, Pan C, Liu H, Zhang Q, Li H. An Attention-Based Deep Learning Method for Schizophrenia Patients Classification Using DNA Methylation Data. Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference. 2020: 172-175. PMID 33017957 DOI: 10.1109/EMBC44109.2020.9175934   
2020 Zhao Z, Chen Z, Liu D, Wang L, Liu S. Fuel strand-powered self-propelled electrochemical DNA machine for enzyme-free and distinctly amplified detection of nucleic acid with tunable performance. Biosensors & Bioelectronics. 171: 112706. PMID 33045656 DOI: 10.1016/j.bios.2020.112706   
2020 Puchtler TJ, Johnson K, Palmer RN, Talbot EL, Ibbotson LA, Powalowska PK, Knox R, Shibahara A, M S Cunha P, Newell OJ, Wu M, Chana J, Athanasopoulou EN, Waeber AM, Stolarek M, et al. Single-molecule DNA sequencing of widely varying GC-content using nucleotide release, capture and detection in microdroplets. Nucleic Acids Research. PMID 33152076 DOI: 10.1093/nar/gkaa987   
2020 Wang X, Yang X. A Simple Blocking PCR-Based Method for the Synthesis of High-Copy dsDNA Tandem Repeats. Small (Weinheim An Der Bergstrasse, Germany). e2003671. PMID 33006262 DOI: 10.1002/smll.202003671   
2020 Wang X, Yang X. A Simple Blocking PCR-Based Method for the Synthesis of High-Copy dsDNA Tandem Repeats. Small (Weinheim An Der Bergstrasse, Germany). e2003671. PMID 33006262 DOI: 10.1002/smll.202003671   
2020 Altemose N, Maslan A, Rios-Martinez C, Lai A, White JA, Streets A. μDamID: A Microfluidic Approach for Joint Imaging and Sequencing of Protein-DNA Interactions in Single Cells. Cell Systems. 11: 354-366.e9. PMID 33099405 DOI: 10.1016/j.cels.2020.08.015   
2020 Yin Y, Wu Z, Li G, Huang J, Guo Q, Meng X. A DNA molecular diagnostic technology with LAMP-like sensitivity based on one pair of hairpin primers-mediated isothermal polymerization amplification. Analytica Chimica Acta. 1134: 144-149. PMID 33059860 DOI: 10.1016/j.aca.2020.05.062   
2020 Inagawa T, Wennink T, Lebbink JHG, Keijzers G, Florea BI, Verkaik NS, van Gent DC. C-Terminal Extensions of Ku70 and Ku80 Differentially Influence DNA End Binding Properties. International Journal of Molecular Sciences. 21. PMID 32937838 DOI: 10.3390/ijms21186725   
2020 Attoye B, Pou C, Blair E, Rinaldi C, Thomson F, Baker MJ, Corrigan DK. Developing a Low-Cost, Simple-to-Use Electrochemical Sensor for the Detection of Circulating Tumour DNA in Human Fluids. Biosensors. 10. PMID 33126531 DOI: 10.3390/bios10110156   
2020 Flood DT, Knouse KW, Vantourout JC, Kitamura S, Sanchez BB, Sturgell EJ, Chen JS, Wolan DW, Baran PS, Dawson PE. Synthetic Elaboration of Native DNA by RASS (SENDR). Acs Central Science. 6: 1789-1799. PMID 33145415 DOI: 10.1021/acscentsci.0c00680   
2020 Vallejo D, Nikoomanzar A, Chaput JC. Directed evolution of custom polymerases using droplet microfluidics. Methods in Enzymology. 644: 227-253. PMID 32943147 DOI: 10.1016/bs.mie.2020.04.056   
2020 Sugimoto K, Momose H, Ito T, Orita H, Sato K, Sakamoto K, Brock MV. Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer. Journal of Visualized Experiments : Jove. PMID 33016948 DOI: 10.3791/61355   
2020 Li J, Weng X, Mo F, Han M, Li H. Superparamagnetic Nanostructures Coupled with an Entropy-Driven DNA Circuit for Elegant and Robust Photoelectrochemical Biosensing. Analytical Chemistry. PMID 33124411 DOI: 10.1021/acs.analchem.0c03580   
2020 Schnepf M, von Reutern M, Ludwig C, Jung C, Gaul U. Transcription Factor Binding Affinities and DNA Shape Readout. Iscience. 23: 101694. PMID 33163946 DOI: 10.1016/j.isci.2020.101694   
2020 Ferreira RM, Ware AD, Matozel E, Price AC. Salt concentration modulates the DNA target search strategy of NdeI. Biochemical and Biophysical Research Communications. PMID 33121681 DOI: 10.1016/j.bbrc.2020.10.036   
2020 Vilar R, Lewis BW, Bisballe N, Santella M, Summers PA, Vannier JB, Kuimova MK, Laursen BW. Assessing the key photophysical properties of triangulenium dyes for DNA binding by alteration of the fluorescent core. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 33105523 DOI: 10.1002/chem.202003875   
2020 Lämmle CA, Varady A, Müller TG, Sturtzel C, Riepl M, Mathes B, Eichhorst J, Sporbert A, Lehmann M, Kräusslich HG, Distel M, Broichhagen J. Photocaged Hoechst enables subnuclear visualization and cell selective staining of DNA in vivo. Chembiochem : a European Journal of Chemical Biology. PMID 32974998 DOI: 10.1002/cbic.202000465   
2020 Yang A, Zhang W, Wang J, Yang K, Han Y, Zhang L. Review on the Application of Machine Learning Algorithms in the Sequence Data Mining of DNA. Frontiers in Bioengineering and Biotechnology. 8: 1032. PMID 33015010 DOI: 10.3389/fbioe.2020.01032   
2020 Wu Q. Guardians of the genome: DNA damage and repair. Essays in Biochemistry. PMID 33094811 DOI: 10.1042/EBC20200109   
2020 Gu S, Li J, Li S, Cao J, Bu J, Ren Y, Du W, Chen Z, Xu C, Wang M, Jiang L, Huang C, Du J. Efficient replacement of long DNA fragments via non-homologous end joining at non-coding regions. Journal of Molecular Cell Biology. PMID 33057691 DOI: 10.1093/jmcb/mjaa051   
2020 Wu J, Gao HY, Luo L, Wen ST, Chen PY, Yu J. DNA Barcode Technology and Its Application Prospects in Forensic Medicine. Fa Yi Xue Za Zhi. 36: 559-564. PMID 33047543 DOI: 10.12116/j.issn.1004-5619.2020.04.023   
2020 Wan Y, Wang H, Ji J, Kang K, Yang M, Huang Y, Su Y, Ma K, Zhu L, Deng S. Zippering DNA Tetrahedral Hyperlink for Ultrasensitive Electrochemical MicroRNA Detection. Analytical Chemistry. PMID 33119272 DOI: 10.1021/acs.analchem.0c03553   
2020 Li S, Tollefsbol TO. DNA methylation methods: global DNA methylation and methylomic analyses. Methods (San Diego, Calif.). PMID 33039572 DOI: 10.1016/j.ymeth.2020.10.002   
2020 Reither JB, Gray E, Durdle A, Conlan XA, van Oorschot RAH, Szkuta B. Investigation into the prevalence of background DNA on flooring within houses and its transfer to a contacting surface. Forensic Science International. 110563. PMID 33168422 DOI: 10.1016/j.forsciint.2020.110563   
2020 Rojas MF, König GA, Vagnozzi AE, Vera FS, Scolaro LA, Craig MI. Optimization and application of a high-resolution melting protocol in the characterization of avian infectious laryngotracheitis virus. Revista Argentina De Microbiologia. PMID 32921516 DOI: 10.1016/j.ram.2020.04.008   
2020 Ye T, Zhang Z, Lu J, Yuan M, Cao H, Yin F, Wu X, Xu F. Enzyme-powered cascade three-dimensional DNA machine for the ultrasensitive determination of kanamycin. Nanoscale. PMID 33048076 DOI: 10.1039/d0nr05077f   
2020 Liu J, Zhang J, Chen M, Qiu D, Lv X, Jiang Q, Cheng Y. Integration of magnetic separation and real-time ligation chain reaction for detection of uracil-DNA glycosylase. Analytical and Bioanalytical Chemistry. PMID 33079213 DOI: 10.1007/s00216-020-02997-8   
2020 Sharma D, Singh A, Pathak M, Kaur L, Kumar V, Roy BG, Ojha H. DNA binding and antiradical potential of ethyl pyruvate: Key to the DNA radioprotection. Chemico-Biological Interactions. 109313. PMID 33171137 DOI: 10.1016/j.cbi.2020.109313   
2020 Wang D, Yu L, Ji B, Chang S, Song J, Ke Y. Programming the Curvatures in Reconfigurable DNA Domino Origami by Using Asymmetric Units. Nano Letters. PMID 33095024 DOI: 10.1021/acs.nanolett.0c03348   
2020 Lv H, Chen A, Cheng W, Kong L, Zhao M, Ding S, Ju H, Cheng W. Efficient DNA Walker Guided with Well-Regulated Interfacial Tracks for Ultrasensitive Electrochemiluminescence Biosensing. Analytical Chemistry. PMID 33170673 DOI: 10.1021/acs.analchem.0c03893   
2020 Sparks MA, Burgers PM, Galletto R. Pif1, RPA and FEN1 modulate the ability of DNA polymerase δ to overcome protein barriers during DNA synthesis. The Journal of Biological Chemistry. PMID 32913126 DOI: 10.1074/jbc.RA120.015699