Year |
Citation |
Score |
2018 |
Le KK, Whiteside MD, Hopkins JE, Gannon VPJ, Laing CR. Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses. Database : the Journal of Biological Databases and Curation. 2018: 1-10. PMID 30212910 DOI: 10.1093/database/bay086 |
0.434 |
|
2017 |
Panmanee W, Charoenlap N, Atichartpongkul S, Mahavihakanont A, Whiteside MD, Winsor G, Brinkman FSL, Mongkolsuk S, Hassett DJ. The OxyR-regulated phnW gene encoding 2-aminoethylphosphonate:pyruvate aminotransferase helps protect Pseudomonas aeruginosa from tert-butyl hydroperoxide. Plos One. 12: e0189066. PMID 29216242 DOI: 10.1371/Journal.Pone.0189066 |
0.326 |
|
2017 |
Whiteside MD, Gannon VPJ, Laing CR. Phylotyper: in silico predictor of gene subtypes. Bioinformatics (Oxford, England). PMID 29036291 DOI: 10.1093/bioinformatics/btx459 |
0.336 |
|
2017 |
Laing CR, Whiteside MD, Gannon VPJ. Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar. Frontiers in Microbiology. 8: 1345. PMID 28824552 DOI: 10.3389/fmicb.2017.01345 |
0.436 |
|
2016 |
Whiteside MD, Laing CR, Manji A, Kruczkiewicz P, Taboada EN, Gannon VP. SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli. Bmc Microbiology. 16: 65. PMID 27067409 DOI: 10.1186/s12866-016-0680-0 |
0.341 |
|
2014 |
Whiteside MD, Laing CR, Manji A, Gannon VPJ. SuperPhy: A pilot resource for integrated phylogenetic and epidemiological analysis of pathogens Bioinformatics 2014 - 5th Int. Conf. On Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 7th Int. Joint Conference On Biomedical Engineering Systems and Technologies, Biostec 2014. 40-48. |
0.455 |
|
2013 |
Frédéric MY, Lundin VF, Whiteside MD, Cueva JG, Tu DK, Kang SY, Singh H, Baillie DL, Hutter H, Goodman MB, Brinkman FS, Leroux MR. Identification of 526 conserved metazoan genetic innovations exposes a new role for cofactor E-like in neuronal microtubule homeostasis. Plos Genetics. 9: e1003804. PMID 24098140 DOI: 10.1371/Journal.Pgen.1003804 |
0.597 |
|
2013 |
Whiteside MD, Winsor GL, Laird MR, Brinkman FS. OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis. Nucleic Acids Research. 41: D366-76. PMID 23203876 DOI: 10.1093/Nar/Gks1241 |
0.677 |
|
2012 |
Bashashati A, Johnson NA, Khodabakhshi AH, Whiteside MD, Zare H, Scott DW, Lo K, Gottardo R, Brinkman FS, Connors JM, Slack GW, Gascoyne RD, Weng AP, Brinkman RR. B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma. American Journal of Clinical Pathology. 137: 805-14. PMID 22523221 DOI: 10.1309/Ajcpgr8Bg4Jdvowr |
0.548 |
|
2011 |
Winsor GL, Lam DK, Fleming L, Lo R, Whiteside MD, Yu NY, Hancock RE, Brinkman FS. Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Research. 39: D596-600. PMID 20929876 DOI: 10.1093/Nar/Gkq869 |
0.698 |
|
2011 |
Min JE, Whiteside MD, Brinkman FSL, McNeney B, Graham J. A statistical approach to high-throughput screening of predicted orthologs Computational Statistics and Data Analysis. 55: 935-943. DOI: 10.1016/J.Csda.2010.08.002 |
0.377 |
|
2010 |
Tomljenovic-Berube AM, Mulder DT, Whiteside MD, Brinkman FS, Coombes BK. Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system. Plos Genetics. 6: e1000875. PMID 20300643 DOI: 10.1371/Journal.Pgen.1000875 |
0.647 |
|
2009 |
Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... Whiteside MD, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588 |
0.674 |
|
2009 |
Winsor GL, Van Rossum T, Lo R, Khaira B, Whiteside MD, Hancock RE, Brinkman FS. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Nucleic Acids Research. 37: D483-8. PMID 18978025 DOI: 10.1093/Nar/Gkn861 |
0.675 |
|
2008 |
Winsor GL, Khaira B, Van Rossum T, Lo R, Whiteside MD, Brinkman FS. The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. Bioinformatics (Oxford, England). 24: 2803-4. PMID 18842600 DOI: 10.1093/Bioinformatics/Btn524 |
0.669 |
|
2008 |
Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, Barsky A, Gardy JL, Roche FM, Chan TH, Shah N, Lo R, Naseer M, Que J, Yau M, Acab M, ... ... Whiteside MD, et al. InnateDB: facilitating systems-level analyses of the mammalian innate immune response. Molecular Systems Biology. 4: 218. PMID 18766178 DOI: 10.1038/Msb.2008.55 |
0.591 |
|
2008 |
Gardy J, Lynn D, Winsor G, Barsky A, Roche F, Chan T, Laird M, Chan C, Shah N, Richard N, Lo R, Naseer M, Que J, Yau M, Acab M, ... ... Whiteside M, et al. InnateDB & Cerebral: user‐friendly tools for the systems‐level analysis of innate immunity The Faseb Journal. 22: 541-541. DOI: 10.1096/Fasebj.22.2_Supplement.541 |
0.556 |
|
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