| Year |
Citation |
Score |
| 2023 |
Baños H, Susko E, Roger AJ. Is Over-parameterization a Problem for Profile Mixture Models? Systematic Biology. PMID 37843172 DOI: 10.1093/sysbio/syad063 |
0.323 |
|
| 2022 |
Ho LST, Susko E. Ancestral state reconstruction with large numbers of sequences and edge-length estimation. Journal of Mathematical Biology. 84: 21. PMID 35188616 DOI: 10.1007/s00285-022-01715-5 |
0.347 |
|
| 2021 |
Susko E, Roger AJ. Long Branch Attraction Biases in Phylogenetics. Systematic Biology. PMID 33528562 DOI: 10.1093/sysbio/syab001 |
0.304 |
|
| 2020 |
Youssef N, Susko E, Bielawski JP. Consequences of Stability-Induced Epistasis for Substitution Rates. Molecular Biology and Evolution. PMID 32897316 DOI: 10.1093/Molbev/Msaa151 |
0.374 |
|
| 2019 |
Jones CT, Youssef N, Susko E, Bielawski JP. A phenotype-genotype codon model for detecting adaptive evolution. Systematic Biology. PMID 31730199 DOI: 10.1093/Sysbio/Syz075 |
0.399 |
|
| 2019 |
Susko E, Roger AJ. On the Use of Information Criteria for Model Selection in Phylogenetics. Molecular Biology and Evolution. PMID 31688943 DOI: 10.1093/Molbev/Msz228 |
0.444 |
|
| 2019 |
Jones CT, Susko E, Bielawski JP. Looking for Darwin in Genomic Sequences: Validity and Success Depends on the Relationship Between Model and Data. Methods in Molecular Biology (Clifton, N.J.). 1910: 399-426. PMID 31278672 DOI: 10.1007/978-1-4939-9074-0_13 |
0.431 |
|
| 2019 |
Wang HC, Susko E, Roger AJ. The Relative Importance of Modeling Site Pattern Heterogeneity Versus Partition-Wise Heterotachy in Phylogenomic Inference. Systematic Biology. PMID 31140564 DOI: 10.1093/Sysbio/Syz021 |
0.442 |
|
| 2019 |
Muñoz-Gómez SA, Hess S, Burger G, Lang BF, Susko E, Slamovits CH, Roger AJ. An updated phylogeny of the reveals that the parasitic and have independent origins. Elife. 8. PMID 30789345 DOI: 10.7554/Elife.42535 |
0.34 |
|
| 2018 |
Mingrone J, Susko E, Bielawski J. ModL: exploring and restoring regularity when testing for positive selection. Bioinformatics (Oxford, England). PMID 30541063 DOI: 10.1093/Bioinformatics/Bty1019 |
0.364 |
|
| 2018 |
Susko E, Lincker L, Roger AJ. Accelerated Estimation of Frequency Classes in Site-Heterogeneous Profile Mixture Models. Molecular Biology and Evolution. 35: 1266-1283. PMID 29688541 DOI: 10.1093/Molbev/Msy026 |
0.452 |
|
| 2018 |
Jones CT, Youssef N, Susko E, Bielawski JP. Phenomenological load on model parameters can lead to false biological conclusions. Molecular Biology and Evolution. PMID 29596684 DOI: 10.1093/Molbev/Msy049 |
0.411 |
|
| 2017 |
Wang HC, Minh BQ, Susko E, Roger AJ. Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation. Systematic Biology. PMID 28950365 DOI: 10.1093/Sysbio/Syx068 |
0.461 |
|
| 2017 |
Robicheau BM, Susko E, Harrigan AM, Snyder M. Ribosomal RNA genes contribute to the formation of pseudogenes and junk DNA in the human genome. Genome Biology and Evolution. PMID 28204512 DOI: 10.1093/Gbe/Evw307 |
0.315 |
|
| 2017 |
Susko E. Bayes factor biases for non-nested models and corrections Canadian Journal of Statistics. 45: 290-309. DOI: 10.1002/Cjs.11325 |
0.401 |
|
| 2016 |
Jones CT, Youssef N, Susko E, Bielawski JP. Shifting Balance on a Static Mutation-Selection Landscape: A Novel Scenario of Positive Selection. Molecular Biology and Evolution. PMID 28110273 DOI: 10.1093/Molbev/Msw237 |
0.39 |
|
| 2016 |
Wang HC, Susko E, Roger AJ. Split-specific Bootstrap Measures for Quantifying Phylogenetic Stability and the Influence of Taxon Selection. Molecular Phylogenetics and Evolution. PMID 27568211 DOI: 10.1016/J.Ympev.2016.08.017 |
0.389 |
|
| 2016 |
Mingrone J, Susko E, Bielawski J. Smoothed Bootstrap Aggregation for Assessing Selection Pressure at Amino Acid Sites. Molecular Biology and Evolution. PMID 27486222 DOI: 10.1093/Molbev/Msw160 |
0.446 |
|
| 2015 |
Susko E. Bayesian long branch attraction bias and corrections. Systematic Biology. 64: 243-55. PMID 25432892 DOI: 10.1093/Sysbio/Syu099 |
0.352 |
|
| 2014 |
Levy Karin E, Susko E, Pupko T. Alignment errors strongly impact likelihood-based tests for comparing topologies. Molecular Biology and Evolution. 31: 3057-67. PMID 25085999 DOI: 10.1093/Molbev/Msu231 |
0.401 |
|
| 2014 |
Wang HC, Susko E, Roger AJ. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation. Molecular Biology and Evolution. 31: 779-92. PMID 24441033 DOI: 10.1093/Molbev/Msu044 |
0.367 |
|
| 2014 |
Susko E. Tests for two trees using likelihood methods. Molecular Biology and Evolution. 31: 1029-39. PMID 24401182 DOI: 10.1093/Molbev/Msu039 |
0.377 |
|
| 2013 |
Wang HC, Susko E, Roger AJ. The site-wise log-likelihood score is a good predictor of genes under positive selection. Journal of Molecular Evolution. 76: 280-94. PMID 23595859 DOI: 10.1007/S00239-013-9557-0 |
0.424 |
|
| 2013 |
Susko E, Roger AJ. Problems with estimation of ancestral frequencies under stationary models. Systematic Biology. 62: 330-8. PMID 22949482 DOI: 10.1093/Sysbio/Sys075 |
0.321 |
|
| 2013 |
Susko E. Likelihood ratio tests with boundary constraints using data-dependent degrees of freedom Biometrika. 100: 1019-1023. DOI: 10.1093/Biomet/Ast032 |
0.367 |
|
| 2012 |
Zou L, Susko E, Field C, Roger AJ. Fitting nonstationary general-time-reversible models to obtain edge-lengths and frequencies for the barry-hartigan model. Systematic Biology. 61: 927-40. PMID 22508720 DOI: 10.1093/Sysbio/Sys046 |
0.426 |
|
| 2012 |
Susko E, Roger AJ. The probability of correctly resolving a split as an experimental design criterion in phylogenetics. Systematic Biology. 61: 811-21. PMID 22337142 DOI: 10.1093/Sysbio/Sys033 |
0.412 |
|
| 2011 |
Gaston D, Susko E, Roger AJ. A phylogenetic mixture model for the identification of functionally divergent protein residues. Bioinformatics (Oxford, England). 27: 2655-63. PMID 21840876 DOI: 10.1093/Bioinformatics/Btr470 |
0.345 |
|
| 2011 |
Susko E. Improved least squares topology testing and estimation. Systematic Biology. 60: 668-75. PMID 21486744 DOI: 10.1093/Sysbio/Syr028 |
0.418 |
|
| 2011 |
Zou L, Susko E, Field C, Roger AJ. The parameters of the Barry and Hartigan general Markov model are statistically nonidentifiable. Systematic Biology. 60: 872-5. PMID 21471307 DOI: 10.1093/Sysbio/Syr034 |
0.339 |
|
| 2011 |
Susko E. Large sample approximations of probabilities of correct evolutionary tree estimation and biases of maximum likelihood estimation. Statistical Applications in Genetics and Molecular Biology. 10: Article 10. PMID 21381435 DOI: 10.2202/1544-6115.1626 |
0.444 |
|
| 2011 |
Wang HC, Susko E, Roger AJ. Fast statistical tests for detecting heterotachy in protein evolution. Molecular Biology and Evolution. 28: 2305-15. PMID 21343603 DOI: 10.1093/Molbev/Msr050 |
0.397 |
|
| 2011 |
Wu J, Susko E. A test for heterotachy using multiple pairs of sequences. Molecular Biology and Evolution. 28: 1661-73. PMID 21186190 DOI: 10.1093/Molbev/Msq346 |
0.423 |
|
| 2010 |
Sangaralingam A, Susko E, Bryant D, Spencer M. On the artefactual parasitic eubacteria clan in conditioned logdet phylogenies: heterotachy and ortholog identification artefacts as explanations. Bmc Evolutionary Biology. 10: 343. PMID 21062453 DOI: 10.1186/1471-2148-10-343 |
0.386 |
|
| 2010 |
Susko E. First-order correct bootstrap support adjustments for splits that allow hypothesis testing when using maximum likelihood estimation. Molecular Biology and Evolution. 27: 1621-9. PMID 20154180 DOI: 10.1093/Molbev/Msq048 |
0.415 |
|
| 2009 |
Susko E. Bootstrap support is not first-order correct. Systematic Biology. 58: 211-23. PMID 20525579 DOI: 10.1093/Sysbio/Syp016 |
0.359 |
|
| 2009 |
Blouin C, Perry S, Lavell A, Susko E, Roger AJ. Reproducing the manual annotation of multiple sequence alignments using a SVM classifier. Bioinformatics (Oxford, England). 25: 3093-8. PMID 19770262 DOI: 10.1093/Bioinformatics/Btp552 |
0.373 |
|
| 2009 |
Wang HC, Susko E, Roger AJ. PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis. Bmc Evolutionary Biology. 9: 225. PMID 19737395 DOI: 10.1186/1471-2148-9-225 |
0.397 |
|
| 2009 |
Wu J, Susko E. General heterotachy and distance method adjustments. Molecular Biology and Evolution. 26: 2689-97. PMID 19687305 DOI: 10.1093/Molbev/Msp184 |
0.462 |
|
| 2009 |
Susko E, Roger AJ. Statistical analysis of expressed sequence tags. Methods in Molecular Biology (Clifton, N.J.). 533: 277-87. PMID 19277567 DOI: 10.1007/978-1-60327-136-3_13 |
0.337 |
|
| 2008 |
Wang HC, Li K, Susko E, Roger AJ. A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny. Bmc Evolutionary Biology. 8: 331. PMID 19087270 DOI: 10.1186/1471-2148-8-331 |
0.398 |
|
| 2008 |
Susko E. On the distributions of bootstrap support and posterior distributions for a star tree. Systematic Biology. 57: 602-12. PMID 18709598 DOI: 10.1080/10635150802302468 |
0.376 |
|
| 2008 |
Leigh JW, Susko E, Baumgartner M, Roger AJ. Testing congruence in phylogenomic analysis. Systematic Biology. 57: 104-15. PMID 18288620 DOI: 10.1080/10635150801910436 |
0.423 |
|
| 2008 |
Wang HC, Susko E, Spencer M, Roger AJ. Topological estimation biases with covarion evolution. Journal of Molecular Evolution. 66: 50-60. PMID 18080080 DOI: 10.1007/S00239-007-9062-4 |
0.45 |
|
| 2008 |
Bapteste E, Susko E, Leigh J, Ruiz-Trillo I, Bucknam J, Doolittle WF. Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny. Molecular Biology and Evolution. 25: 83-91. PMID 17940208 DOI: 10.1093/Molbev/Msm229 |
0.378 |
|
| 2008 |
Wu J, Susko E, Roger AJ. An independent heterotachy model and its implications for phylogeny and divergence time estimation. Molecular Phylogenetics and Evolution. 46: 801-6. PMID 17716923 DOI: 10.1016/J.Ympev.2007.06.020 |
0.377 |
|
| 2007 |
Susko E, Roger AJ. On reduced amino acid alphabets for phylogenetic inference. Molecular Biology and Evolution. 24: 2139-50. PMID 17652333 DOI: 10.1093/Molbev/Msm144 |
0.387 |
|
| 2007 |
Spencer M, Bryant D, Susko E. Conditioned genome reconstruction: how to avoid choosing the conditioning genome. Systematic Biology. 56: 25-43. PMID 17366135 DOI: 10.1080/10635150601156313 |
0.32 |
|
| 2007 |
Wang HC, Spencer M, Susko E, Roger AJ. Testing for covarion-like evolution in protein sequences. Molecular Biology and Evolution. 24: 294-305. PMID 17056642 DOI: 10.1093/Molbev/Msl155 |
0.421 |
|
| 2006 |
Spencer M, Susko E, Roger AJ. Modelling prokaryote gene content. Evolutionary Bioinformatics Online. 2: 157-78. PMID 19455209 DOI: 10.4137/Ebo.S0 |
0.358 |
|
| 2006 |
Susko E. Using minimum bootstrap support for splits to construct confidence regions for trees. Evolutionary Bioinformatics Online. 2: 129-43. PMID 19455207 DOI: 10.4137/Ebo.S0 |
0.406 |
|
| 2006 |
Filée J, Bapteste E, Susko E, Krisch HM. A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes. Molecular Biology and Evolution. 23: 1688-96. PMID 16782763 DOI: 10.1093/Molbev/Msl036 |
0.3 |
|
| 2006 |
Inagaki Y, Susko E, Roger AJ. Recombination between elongation factor 1alpha genes from distantly related archaeal lineages. Proceedings of the National Academy of Sciences of the United States of America. 103: 4528-33. PMID 16537397 DOI: 10.1073/Pnas.0600744103 |
0.313 |
|
| 2006 |
Susko E, Leigh J, Doolittle WF, Bapteste E. Visualizing and assessing phylogenetic congruence of core gene sets: a case study of the gamma-proteobacteria. Molecular Biology and Evolution. 23: 1019-30. PMID 16495350 DOI: 10.1093/Molbev/Msj113 |
0.325 |
|
| 2005 |
Shi X, Gu H, Susko E, Field C. The comparison of the confidence regions in phylogeny. Molecular Biology and Evolution. 22: 2285-96. PMID 16049192 DOI: 10.1093/Molbev/Msi226 |
0.353 |
|
| 2005 |
Susko E, Spencer M, Roger AJ. Biases in phylogenetic estimation can be caused by random sequence segments. Journal of Molecular Evolution. 61: 351-9. PMID 16044245 DOI: 10.1007/S00239-004-0352-9 |
0.383 |
|
| 2005 |
Bapteste E, Susko E, Leigh J, MacLeod D, Charlebois RL, Doolittle WF. Do orthologous gene phylogenies really support tree-thinking? Bmc Evolutionary Biology. 5: 33. PMID 15913459 DOI: 10.1186/1471-2148-5-33 |
0.36 |
|
| 2005 |
Spencer M, Susko E, Roger AJ. Likelihood, parsimony, and heterogeneous evolution. Molecular Biology and Evolution. 22: 1161-4. PMID 15746012 DOI: 10.1093/Molbev/Msi123 |
0.467 |
|
| 2005 |
Spencer M, Susko E. Continuous-time Markov models for species interactions Ecology. 86: 3272-3278. DOI: 10.1890/05-0029 |
0.306 |
|
| 2004 |
Susko E, Inagaki Y, Roger AJ. On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled. Molecular Biology and Evolution. 21: 1629-42. PMID 15155796 DOI: 10.1093/Molbev/Msh159 |
0.465 |
|
| 2004 |
Susko E, Roger AJ. Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys. Bioinformatics (Oxford, England). 20: 2279-87. PMID 15059814 DOI: 10.1093/Bioinformatics/Bth239 |
0.349 |
|
| 2004 |
Inagaki Y, Susko E, Fast NM, Roger AJ. Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies. Molecular Biology and Evolution. 21: 1340-9. PMID 15034136 DOI: 10.1093/Molbev/Msh130 |
0.369 |
|
| 2003 |
Susko E, Field C, Blouin C, Roger AJ. Estimation of rates-across-sites distributions in phylogenetic substitution models. Systematic Biology. 52: 594-603. PMID 14530128 DOI: 10.1080/10635150390235395 |
0.457 |
|
| 2003 |
Susko E. Confidence regions and hypothesis tests for topologies using generalized least squares. Molecular Biology and Evolution. 20: 862-8. PMID 12716999 DOI: 10.1093/Molbev/Msg093 |
0.366 |
|
| 2003 |
Susko E. Weighted tests of homogeneity for testing the number of components in a mixture Computational Statistics and Data Analysis. 41: 367-378. DOI: 10.1016/S0167-9473(02)00162-7 |
0.35 |
|
| 2002 |
Susko E, Inagaki Y, Field C, Holder ME, Roger AJ. Testing for differences in rates-across-sites distributions in phylogenetic subtrees. Molecular Biology and Evolution. 19: 1514-23. PMID 12200479 DOI: 10.1093/Oxfordjournals.Molbev.A004214 |
0.389 |
|
| 2002 |
Susko E, Nadon R. Estimation of a residual distribution with small numbers of repeated measurements Canadian Journal of Statistics. 30: 383-400. DOI: 10.2307/3316143 |
0.409 |
|
| 2001 |
Susko E, Chen J, Kalbfleisch JD. A diagnostic tool for mixture models Journal of Statistical Computation and Simulation. 69: 293-313. DOI: 10.1080/00949650108812097 |
0.613 |
|
| 2001 |
Susko E, Chen J, Kalbfleisch JD. A diagnostic tool for mixture models Journal of Statistical Computation and Simulation. 69: 293-313. |
0.585 |
|
| 1998 |
Susko E, Kalbfleisch JD, Chen J. Constrained nonparametric maximum-likelihood estimation for mixture models Canadian Journal of Statistics. 26: 601-617. |
0.556 |
|
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