☰

Derek Toomre - Publications

Affiliations: 
Yale University, New Haven, CT 
Area:
Cell Biology, Neuroscience Biology, Biostatistics Biology
Tree Info Similar researchers PubMed Report error

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kilian N, Zhang Y, LaMonica L, Hooker G, Toomre D, Mamoun CB, Ernst AM. Palmitoylated Proteins in Plasmodium falciparum-Infected Erythrocytes: Investigation with Click Chemistry and Metabolic Labeling. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e1900145. PMID 32342554 DOI: 10.1002/Bies.201900145  0.303
2020 Gupta A, Rivera-Molina F, Xi Z, Toomre D, Schepartz A. Endosome motility defects revealed at super-resolution in live cells using HIDE probes. Nature Chemical Biology. PMID 32094922 DOI: 10.1038/S41589-020-0479-Z  0.42
2019 Ernst AM, Toomre D, Bogan JS. Acylation - A New Means to Control Traffic Through the Golgi. Frontiers in Cell and Developmental Biology. 7: 109. PMID 31245373 DOI: 10.3389/Fcell.2019.00109  0.367
2019 Erdmann RS, Baguley SW, Richens JH, Wissner RF, Xi Z, Allgeyer ES, Zhong S, Thompson AD, Lowe N, Butler R, Bewersdorf J, Rothman JE, St Johnston D, Schepartz A, Toomre D. Labeling Strategies Matter for Super-Resolution Microscopy: A Comparison between HaloTags and SNAP-tags. Cell Chemical Biology. PMID 30745239 DOI: 10.1016/J.Chembiol.2019.01.003  0.389
2018 Zhong S, Rivera-Molina F, Rivetta A, Toomre D, Santos-Sacchi J, Navaratnam D. Seeing the long tail: A novel green fluorescent protein, SiriusGFP, for ultra long timelapse imaging. Journal of Neuroscience Methods. PMID 30578868 DOI: 10.1016/J.Jneumeth.2018.12.008  0.359
2018 Ernst AM, Syed SA, Zaki O, Bottanelli F, Zheng H, Hacke M, Xi Z, Rivera-Molina F, Graham M, Rebane AA, Björkholm P, Baddeley D, Toomre D, Pincet F, Rothman JE. S-Palmitoylation Sorts Membrane Cargo for Anterograde Transport in the Golgi. Developmental Cell. 47: 479-493.e7. PMID 30458139 DOI: 10.1016/J.Devcel.2018.10.024  0.386
2018 Kilian N, Goryaynov A, Lessard MD, Hooker G, Toomre D, Rothman JE, Bewersdorf J. Assessing photodamage in live-cell STED microscopy. Nature Methods. 15: 755-756. PMID 30275592 DOI: 10.1038/S41592-018-0145-5  0.322
2018 Kofler N, Corti F, Rivera-Molina F, Deng Y, Toomre D, Simons M. The Rab-effector protein RABEP2 regulates endosomal trafficking to mediate vascular endothelial growth factor receptor-2 (VEGFR2)-dependent signaling. The Journal of Biological Chemistry. PMID 29425100 DOI: 10.1074/Jbc.M117.812172  0.354
2017 Erdmann RS, Toomre D, Schepartz A. STED Imaging of Golgi Dynamics with Cer-SiR: A Two-Component, Photostable, High-Density Lipid Probe for Live Cells. Methods in Molecular Biology (Clifton, N.J.). 1663: 65-78. PMID 28924659 DOI: 10.1007/978-1-4939-7265-4_6  0.391
2017 Huet-Calderwood C, Rivera-Molina F, Iwamoto DV, Kromann EB, Toomre D, Calderwood DA. Novel ecto-tagged integrins reveal their trafficking in live cells. Nature Communications. 8: 570. PMID 28924207 DOI: 10.1038/S41467-017-00646-W  0.37
2017 Thompson AD, Bewersdorf J, Toomre D, Schepartz A. HIDE Probes: A New Toolkit for Visualizing Organelle Dynamics, Longer and at Super-Resolution. Biochemistry. PMID 28792749 DOI: 10.1021/Acs.Biochem.7B00545  0.414
2017 Schepartz A, Thompson AD, Omar MH, Rivera-Molina F, Xi Z, Koleske AJ, Toomre DK. Long-Term Live-Cell STED Nanoscopy of Primary and Cultured Cells with the Plasma Membrane HIDE Probe DiI-SiR. Angewandte Chemie (International Ed. in English). PMID 28679029 DOI: 10.1002/Anie.201704783  0.316
2017 Takakura H, Zhang Y, Erdmann RS, Thompson AD, Lin Y, McNellis B, Rivera-Molina F, Uno SN, Kamiya M, Urano Y, Rothman JE, Bewersdorf J, Schepartz A, Toomre D. Long time-lapse nanoscopy with spontaneously blinking membrane probes. Nature Biotechnology. 35: 773-780. PMID 28671662 DOI: 10.1038/Nbt.3876  0.444
2017 Bottanelli F, Kilian N, Ernst AM, Rivera-Molina F, Schroeder LK, Kromann EB, Lessard MD, Erdmann RS, Schepartz A, Baddeley D, Bewersdorf J, Toomre D, Rothman JE. A novel physiological role for ARF1 in the formation of bidirectional tubules from the Golgi. Molecular Biology of the Cell. 28: 1676-1687. PMID 28428254 DOI: 10.1091/Mbc.E16-12-0863  0.364
2016 Fan J, Zhou X, Wang Y, Kuang C, Sun Y, Liu X, Toomre D, Xu Y. Differential requirement for NSF in endosomal trafficking of transferrin receptor from anterograde trafficking of VSVG. Febs Letters. PMID 27995606 DOI: 10.1002/1873-3468.12532  0.372
2016 Zhou HJ, Qin L, Zhang H, Tang W, Ji W, He Y, Liang X, Wang Z, Yuan Q, Vortmeyer A, Toomre D, Fuh G, Yan M, Kluger MS, Wu D, et al. Endothelial exocytosis of angiopoietin-2 resulting from CCM3 deficiency contributes to cerebral cavernous malformation. Nature Medicine. PMID 27548575 DOI: 10.1038/Nm.4169  0.324
2016 Kukic I, Rivera-Molina F, Toomre D. The IN/OUT assay: a new tool to study ciliogenesis Cilia. 5: 23-23. PMID 27493724 DOI: 10.1186/S13630-016-0044-2  0.363
2016 Huang F, Sirinakis G, Allgeyer ES, Schroeder LK, Duim WC, Kromann EB, Phan T, Rivera-Molina FE, Myers JR, Irnov I, Lessard M, Zhang Y, Handel MA, Jacobs-Wagner C, Lusk CP, ... ... Toomre D, et al. Ultra-High Resolution 3D Imaging of Whole Cells. Cell. 166: 1028-1040. PMID 27397506 DOI: 10.1016/J.Cell.2016.06.016  0.36
2016 Rauch L, Hennings K, Trasak C, Röder A, Schröder B, Koch-Nolte F, Rivera-Molina F, Toomre D, Aepfelbacher M. Staphylococcus aureus recruits Cdc42GAP via recycling endosomes and exocyst to invade human endothelial cells. Journal of Cell Science. PMID 27311480 DOI: 10.1242/Jcs.186213  0.344
2016 Xu Y, Nan D, Fan J, Bogan JS, Toomre D. Optogenetic activation reveals distinct roles of PI(3,4,5)P3 and Akt in adipocyte insulin action. Journal of Cell Science. PMID 27076519 DOI: 10.1242/Jcs.174805  0.329
2016 Bottanelli F, Kromann EB, Allgeyer ES, Erdmann RS, Wood Baguley S, Sirinakis G, Schepartz A, Baddeley D, Toomre DK, Rothman JE, Bewersdorf J. Two-colour live-cell nanoscale imaging of intracellular targets. Nature Communications. 7: 10778. PMID 26940217 DOI: 10.1038/Ncomms10778  0.353
2015 Stoops EH, Hull M, Olesen C, Mistry K, Harder JL, Rivera-Molina F, Toomre D, Caplan MJ. The periciliary ring in polarized epithelial cells is a hot spot for delivery of the apical protein gp135. The Journal of Cell Biology. 211: 287-94. PMID 26504168 DOI: 10.1083/Jcb.201502045  0.391
2015 Stoops EH, Hull M, Olesen C, Mistry K, Harder JL, Rivera-Molina F, Toomre D, Caplan MJ. The periciliary ring in polarized epithelial cells is a hot spot for delivery of the apical protein gp135 The Journal of General Physiology. 146. DOI: 10.1085/Jgp.1466Oia69  0.315
2014 Erdmann RS, Takakura H, Thompson AD, Rivera-Molina F, Allgeyer ES, Bewersdorf J, Toomre D, Schepartz A. Super-resolution imaging of the Golgi in live cells with a bioorthogonal ceramide probe. Angewandte Chemie (International Ed. in English). 53: 10242-6. PMID 25081303 DOI: 10.1002/Anie.201403349  0.334
2013 Zhang Y, Tang W, Zhang H, Niu X, Xu Y, Zhang J, Gao K, Pan W, Boggon TJ, Toomre D, Min W, Wu D. A network of interactions enables CCM3 and STK24 to coordinate UNC13D-driven vesicle exocytosis in neutrophils. Developmental Cell. 27: 215-26. PMID 24176643 DOI: 10.1016/J.Devcel.2013.09.021  0.302
2013 Rivera-Molina F, Toomre D. Live-cell imaging of exocyst links its spatiotemporal dynamics to various stages of vesicle fusion. Journal of Cell Biology. 201: 673-680. PMID 23690179 DOI: 10.1083/Jcb.201212103  0.474
2012 Toomre D. Generating Live Cell Data Using Total Internal Reflection Fluorescence Microscopy Csh Protocols. 2012: 439. PMID 22474670 DOI: 10.1101/Pdb.Ip068676  0.438
2012 Toomre D. Alignment and Calibration of Total Internal Reflection Fluorescence Microscopy Systems Csh Protocols. 2012: 504. PMID 22474669 DOI: 10.1101/Pdb.Prot068668  0.412
2012 Toomre D. Cellular imaging using total internal reflection fluorescence microscopy: theory and instrumentation. Csh Protocols. 2012: 414. PMID 22474668 DOI: 10.1101/Pdb.Top068650  0.413
2011 Kim KH, Toomre D, Bender JR. Splice isoform estrogen receptors as integral transmembrane proteins. Molecular Biology of the Cell. 22: 4415-23. PMID 21937726 DOI: 10.1091/Mbc.E11-05-0416  0.376
2011 Chen XW, Leto D, Xiao J, Goss J, Wang Q, Shavit JA, Xiong T, Yu G, Ginsburg D, Toomre D, Xu Z, Saltiel AR. Exocyst function is regulated by effector phosphorylation. Nature Cell Biology. 13: 580-8. PMID 21516108 DOI: 10.1038/Ncb2226  0.335
2011 Yang Q, Karpikov A, Toomre D, Duncan JS. 3-D reconstruction of microtubules from multi-angle total internal reflection fluorescence microscopy using Bayesian framework. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 20: 2248-59. PMID 21324778 DOI: 10.1109/Tip.2011.2114359  0.329
2010 Toomre D, Bewersdorf J. A new wave of cellular imaging. Annual Review of Cell and Developmental Biology. 26: 285-314. PMID 20929313 DOI: 10.1146/Annurev-Cellbio-100109-104048  0.363
2010 Nakatsu F, Perera RM, Lucast L, Zoncu R, Domin J, Gertler FB, Toomre D, De Camilli P. The inositol 5-phosphatase SHIP2 regulates endocytic clathrin-coated pit dynamics. The Journal of Cell Biology. 190: 307-15. PMID 20679431 DOI: 10.1083/Jcb.201005018  0.323
2010 Letinic K, Sebastian R, Barthel A, Toomre D. Deciphering subcellular processes in live imaging datasets via dynamic probabilistic networks. Bioinformatics (Oxford, England). 26: 2029-36. PMID 20581401 DOI: 10.1093/Bioinformatics/Btq331  0.396
2010 Chung I, Akita R, Vandlen R, Toomre D, Schlessinger J, Mellman I. Spatial control of EGF receptor activation by reversible dimerization on living cells. Nature. 464: 783-7. PMID 20208517 DOI: 10.1038/Nature08827  0.314
2010 Díaz E, Ayala G, Díaz ME, Gong LW, Toomre D. Automatic detection of large dense-core vesicles in secretory cells and statistical analysis of their intracellular distribution. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 2-11. PMID 20150664 DOI: 10.1109/Tcbb.2008.30  0.386
2009 Letinic K, Sebastian R, Toomre D, Rakic P. Exocyst is involved in polarized cell migration and cerebral cortical development. Proceedings of the National Academy of Sciences of the United States of America. 106: 11342-7. PMID 19549839 DOI: 10.1073/Pnas.0904244106  0.397
2009 Zoncu R, Perera RM, Balkin DM, Pirruccello M, Toomre D, De Camilli P. A phosphoinositide switch controls the maturation and signaling properties of APPL endosomes. Cell. 136: 1110-21. PMID 19303853 DOI: 10.1016/J.Cell.2009.01.032  0.356
2009 Chung I, Toomre D, Schlessinger J, Mellman I. Spontaneously Formed EGFR Dimers Are Primed For Activation Biophysical Journal. 96: 368a. DOI: 10.1016/J.Bpj.2008.12.1984  0.317
2008 Díaz ME, Ayala G, León T, Zoncu R, Toomre D. Analyzing protein-protein spatial-temporal dependencies from image sequences using fuzzy temporal random sets. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 1221-36. PMID 18973437 DOI: 10.1089/Cmb.2008.0055  0.373
2008 Díaz E, Sebastian R, Ayala G, Díaz ME, Zoncu R, Toomre D, Gasman S. Measuring spatiotemporal dependencies in bivariate temporal random sets with applications to cell biology. Ieee Transactions On Pattern Analysis and Machine Intelligence. 30: 1659-71. PMID 18617722 DOI: 10.1109/Tpami.2007.70821  0.347
2008 Goss JW, Toomre DK. Both daughter cells traffic and exocytose membrane at the cleavage furrow during mammalian cytokinesis. The Journal of Cell Biology. 181: 1047-54. PMID 18573914 DOI: 10.1083/jcb.200712137  0.381
2008 Hadjidemetriou S, Toomre D, Duncan J. Motion tracking of the outer tips of microtubules. Medical Image Analysis. 12: 689-702. PMID 18571462 DOI: 10.1016/J.Media.2008.04.004  0.385
2008 Idone V, Tam C, Goss JW, Toomre D, Pypaert M, Andrews NW. Repair of injured plasma membrane by rapid Ca2+-dependent endocytosis. The Journal of Cell Biology. 180: 905-14. PMID 18316410 DOI: 10.1083/Jcb.200708010  0.354
2007 Sfakianos J, Togawa A, Maday S, Hull M, Pypaert M, Cantley L, Toomre D, Mellman I. Par3 functions in the biogenesis of the primary cilium in polarized epithelial cells. The Journal of Cell Biology. 179: 1133-40. PMID 18070914 DOI: 10.1083/Jcb.200709111  0.405
2007 Erdmann KS, Mao Y, McCrea HJ, Zoncu R, Lee S, Paradise S, Modregger J, Biemesderfer D, Toomre D, De Camilli P. A role of the Lowe syndrome protein OCRL in early steps of the endocytic pathway. Developmental Cell. 13: 377-90. PMID 17765681 DOI: 10.1016/J.Devcel.2007.08.004  0.355
2007 Zoncu R, Perera RM, Sebastian R, Nakatsu F, Chen H, Balla T, Ayala G, Toomre D, De Camilli PV. Loss of endocytic clathrin-coated pits upon acute depletion of phosphatidylinositol 4,5-bisphosphate. Proceedings of the National Academy of Sciences of the United States of America. 104: 3793-8. PMID 17360432 DOI: 10.1073/Pnas.0611733104  0.399
2006 Perera RM, Zoncu R, Lucast L, De Camilli P, Toomre D. Two synaptojanin 1 isoforms are recruited to clathrin-coated pits at different stages. Proceedings of the National Academy of Sciences of the United States of America. 103: 19332-7. PMID 17158794 DOI: 10.1073/Pnas.0609795104  0.376
2006 Sebastian R, Diaz ME, Ayala G, Letinic K, Moncho-Bogani J, Toomre D. Spatio-temporal analysis of constitutive exocytosis in epithelial cells. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 3: 17-32. PMID 17048390 DOI: 10.1109/Tcbb.2006.11  0.4
2006 Hua W, Sheff D, Toomre D, Mellman I. Vectorial insertion of apical and basolateral membrane proteins in polarized epithelial cells revealed by quantitative 3D live cell imaging. The Journal of Cell Biology. 172: 1035-44. PMID 16567501 DOI: 10.1083/Jcb.200512012  0.455
2006 Millán J, Hewlett L, Glyn M, Toomre D, Clark P, Ridley AJ. Lymphocyte transcellular migration occurs through recruitment of endothelial ICAM-1 to caveola- and F-actin-rich domains Nature Cell Biology. 8: 113-123. PMID 16429128 DOI: 10.1038/Ncb1356  0.342
2006 Sebastian R, Díaz E, Ayala G, Díaz ME, Zoncu R, Toomre D. Studying endocytosis in space and time by means of temporal Boolean models Pattern Recognition. 39: 2175-2185. DOI: 10.1016/J.Patcog.2006.04.030  0.402
2005 Toomre D. Spying on IgE receptor signaling: simply complex, or not? Journal of Cell Biology. 171: 415-417. PMID 16275748 DOI: 10.1083/Jcb.200510105  0.363
2005 Gong LW, Di Paolo G, Diaz E, Cestra G, Diaz ME, Lindau M, De Camilli P, Toomre D. Phosphatidylinositol phosphate kinase type I gamma regulates dynamics of large dense-core vesicle fusion. Proceedings of the National Academy of Sciences of the United States of America. 102: 5204-9. PMID 15793002 DOI: 10.1073/Pnas.0501412102  0.344
2005 Cestra G, Toomre D, Chang S, De Camilli P. The Abl/Arg substrate ArgBP2/nArgBP2 coordinates the function of multiple regulatory mechanisms converging on the actin cytoskeleton. Proceedings of the National Academy of Sciences of the United States of America. 102: 1731-6. PMID 15659545 DOI: 10.1073/Pnas.0409376102  0.343
2004 He CY, Ho HH, Malsam J, Chalouni C, West CM, Ullu E, Toomre D, Warren G. Golgi duplication in Trypanosoma brucei. The Journal of Cell Biology. 165: 313-21. PMID 15138289 DOI: 10.1083/Jcb.200311076  0.303
2002 Chow A, Toomre D, Garrett W, Mellman I. Dendritic cell maturation triggers retrograde MHC class II transport from lysosomes to the plasma membrane. Nature. 418: 988-94. PMID 12198549 DOI: 10.1038/Nature01006  0.353
2002 Pelletier L, Stern CA, Pypaert M, Sheff D, Ngô HM, Roper N, He CY, Hu K, Toomre D, Coppens I, Roos DS, Joiner KA, Warren G. Golgi biogenesis in Toxoplasma gondii. Nature. 418: 548-52. PMID 12152082 DOI: 10.1038/Nature00946  0.346
2002 Rustom A, Bajohrs M, Kaether C, Keller P, Toomre D, Corbeil D, Gerdes H. Selective delivery of secretory cargo in Golgi-derived carriers of nonepithelial cells. Traffic. 3: 279-288. PMID 11929609 DOI: 10.1034/J.1600-0854.2002.030405.X  0.407
2001 Toomre D, Manstein DJ. Lighting up the cell surface with evanescent wave microscopy Trends in Cell Biology. 11: 298-303. PMID 11413041 DOI: 10.1016/S0962-8924(01)02027-X  0.392
2001 Keller P, Toomre D, Díaz E, White J, Simons K. Multicolour imaging of post-Golgi sorting and trafficking in live cells. Nature Cell Biology. 3: 140-9. PMID 11175746 DOI: 10.1038/35055042  0.458
2001 Toomre D, Keller P, Diaz E, White J, Simons K. Visualization of Membrane Sorting and Fusion in Living Cells using Total Internal Reflection (TIR) and Multicolor Video Microscopy Microscopy and Microanalysis. 7: 34-35. DOI: 10.1017/S1431927600026246  0.373
2000 Simons K, Toomre D. Lipid rafts and signal transduction. Nature Reviews. Molecular Cell Biology. 1: 31-9. PMID 11413487 DOI: 10.1038/35036052  0.348
2000 Toomre D, Steyer JA, Keller P, Almers W, Simons K. Fusion of constitutive membrane traffic with the cell surface observed by evanescent wave microscopy. The Journal of Cell Biology. 149: 33-40. PMID 10747085 DOI: 10.1083/Jcb.149.1.33  0.433
Show low-probability matches.