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Rachel Brem, PhD - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Dubin CA, Voorhies M, Sil A, Teixeira MM, Barker BM, Brem RB. Genome Organization and Copy-Number Variation Reveal Clues to Virulence Evolution in . Journal of Fungi (Basel, Switzerland). 8. PMID 36547568 DOI: 10.3390/jof8121235  0.321
2021 AlZaben F, Chuong JN, Abrams MB, Brem RB. Joint effects of genes underlying a temperature specialization tradeoff in yeast. Plos Genetics. 17: e1009793. PMID 34520469 DOI: 10.1371/journal.pgen.1009793  0.33
2021 Wang W, Flury AG, Garrison JL, Brem RB. Cold survival and its molecular mechanisms in a locally adapted nematode population. Genome Biology and Evolution. PMID 34383891 DOI: 10.1093/gbe/evab188  0.324
2020 Wilson KA, Beck JN, Nelson CS, Hilsabeck TA, Promislow D, Brem RB, Kapahi P. GWAS for Lifespan and Decline in Climbing Ability in Flies upon Dietary Restriction Reveal decima as a Mediator of Insulin-like Peptide Production. Current Biology : Cb. PMID 32502405 DOI: 10.1016/J.Cub.2020.05.020  0.315
2019 Brem R. Evolution: The Genetics of Milk Champagne Yeast. Current Biology : Cb. 29: R248-R250. PMID 30939307 DOI: 10.1016/J.Cub.2019.02.040  0.345
2019 Sanchez MR, Payen C, Cheong F, Hovde BT, Bissonnette S, Arkin AP, Skerker JM, Brem RB, Caudy AA, Dunham MJ. Transposon insertional mutagenesis in reveals trans-acting effects influencing species-dependent essential genes. Genome Research. PMID 30635343 DOI: 10.1101/Gr.232330.117  0.382
2019 Brem R. A SCREEN OF WILD-DERIVED FLY STRAINS REVEALS CG34351 AS A REGULATOR OF TOXIC EFFECTS OF A RICH DIET Innovation in Aging. 3: S68-S68. DOI: 10.1093/Geroni/Igz038.265  0.33
2017 Wilson K, Nelson C, Beck J, Brem R, Kapahi P. GWAS REVEALS NOVEL GENETIC REGULATORS OF DIET-RELATED LONGEVITY OR HEALTH IN DROSOPHILA MELANOGASTER Innovation in Aging. 1: 1227-1227. DOI: 10.1093/Geroni/Igx004.4458  0.426
2016 Mostovoy Y, Thiemicke A, Hsu TY, Brem RB. The Role of Transcription Factors at Antisense-Expressing Gene Pairs in Yeast. Genome Biology and Evolution. PMID 27190003 DOI: 10.1093/gbe/evw104  0.373
2015 McCormick MA, Delaney JR, Tsuchiya M, Tsuchiyama S, Shemorry A, Sim S, Chou AC, Ahmed U, Carr D, Murakami CJ, Schleit J, Sutphin GL, Wasko BM, Bennett CF, Wang AM, ... ... Brem RB, et al. A Comprehensive Analysis of Replicative Lifespan in 4,698 Single-Gene Deletion Strains Uncovers Conserved Mechanisms of Aging. Cell Metabolism. PMID 26456335 DOI: 10.1016/J.Cmet.2015.09.008  0.498
2014 Kellner R, Bhattacharyya A, Poppe S, Hsu TY, Brem RB, Stukenbrock EH. Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs. Genome Biology and Evolution. 6: 1353-65. PMID 24920004 DOI: 10.1093/gbe/evu101  0.322
2014 Ellison CE, Kowbel D, Glass NL, Taylor JW, Brem RB. Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates. Mbio. 5: e01046-13. PMID 24692637 DOI: 10.1128/Mbio.01046-13  0.385
2013 Lee HN, Mostovoy Y, Hsu TY, Chang AH, Brem RB. Divergence of iron metabolism in wild Malaysian yeast. G3 (Bethesda, Md.). 3: 2187-94. PMID 24142925 DOI: 10.1534/g3.113.008011  0.417
2013 Schraiber JG, Mostovoy Y, Hsu TY, Brem RB. Inferring evolutionary histories of pathway regulation from transcriptional profiling data. Plos Computational Biology. 9: e1003255. PMID 24130471 DOI: 10.1371/Journal.Pcbi.1003255  0.323
2013 Palma-Guerrero J, Hall CR, Kowbel D, Welch J, Taylor JW, Brem RB, Glass NL. Genome wide association identifies novel loci involved in fungal communication. Plos Genetics. 9: e1003669. PMID 23935534 DOI: 10.1371/Journal.Pgen.1003669  0.328
2013 Roop JI, Brem RB. Rare variants in hypermutable genes underlie common morphology and growth traits in wild Saccharomyces paradoxus. Genetics. 195: 513-25. PMID 23934881 DOI: 10.1534/genetics.113.155341  0.368
2012 Yoon OK, Hsu TY, Im JH, Brem RB. Genetics and regulatory impact of alternative polyadenylation in human B-lymphoblastoid cells. Plos Genetics. 8: e1002882. PMID 22916029 DOI: 10.1371/journal.pgen.1002882  0.399
2012 Zhu J, Sova P, Xu Q, Dombek KM, Xu EY, Vu H, Tu Z, Brem RB, Bumgarner RE, Schadt EE. Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation. Plos Biology. 10: e1001301. PMID 22509135 DOI: 10.1371/Journal.Pbio.1001301  0.315
2012 Denby CM, Im JH, Yu RC, Pesce CG, Brem RB. Negative feedback confers mutational robustness in yeast transcription factor regulation. Proceedings of the National Academy of Sciences of the United States of America. 109: 3874-8. PMID 22355134 DOI: 10.1073/Pnas.1116360109  0.715
2012 Martin HC, Roop JI, Schraiber JG, Hsu TY, Brem RB. Evolution of a membrane protein regulon in Saccharomyces. Molecular Biology and Evolution. 29: 1747-56. PMID 22319167 DOI: 10.1093/Molbev/Mss017  0.332
2011 Lee HN, Magwene PM, Brem RB. Natural variation in CDC28 underlies morphological phenotypes in an environmental yeast isolate. Genetics. 188: 723-30. PMID 21527779 DOI: 10.1534/genetics.111.128819  0.493
2010 Levin TC, Glazer AM, Pachter L, Brem RB, Eisen MB. Exploring the genetic basis of variation in gene predictions with a synthetic association study. Plos One. 5: e11645. PMID 20686598 DOI: 10.1371/Journal.Pone.0011645  0.334
2009 Dimitrov LN, Brem RB, Kruglyak L, Gottschling DE. Polymorphisms in multiple genes contribute to the spontaneous mitochondrial genome instability of Saccharomyces cerevisiae S288C strains. Genetics. 183: 365-83. PMID 19581448 DOI: 10.1534/Genetics.109.104497  0.59
2008 Zhu J, Zhang B, Smith EN, Drees B, Brem RB, Kruglyak L, Bumgarner RE, Schadt EE. Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. Nature Genetics. 40: 854-61. PMID 18552845 DOI: 10.1038/Ng.167  0.595
2005 Ronald J, Brem RB, Whittle J, Kruglyak L. Local regulatory variation in Saccharomyces cerevisiae. Plos Genetics. 1: e25. PMID 16121257 DOI: 10.1371/Journal.Pgen.0010025  0.638
2005 Brem RB, Storey JD, Whittle J, Kruglyak L. Genetic interactions between polymorphisms that affect gene expression in yeast. Nature. 436: 701-3. PMID 16079846 DOI: 10.1038/Nature03865  0.606
2005 Brem RB, Kruglyak L. The landscape of genetic complexity across 5,700 gene expression traits in yeast. Proceedings of the National Academy of Sciences of the United States of America. 102: 1572-7. PMID 15659551 DOI: 10.1073/Pnas.0408709102  0.6
2003 Yvert G, Brem RB, Whittle J, Akey JM, Foss E, Smith EN, Mackelprang R, Kruglyak L. Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Nature Genetics. 35: 57-64. PMID 12897782 DOI: 10.1038/Ng1222  0.695
2002 Brem RB, Yvert G, Clinton R, Kruglyak L. Genetic dissection of transcriptional regulation in budding yeast. Science (New York, N.Y.). 296: 752-5. PMID 11923494 DOI: 10.1126/Science.1069516  0.726
2000 Brem R, Chan HS, Dill KA. Extracting microscopic energies from oil-phase solvation experiments Journal of Physical Chemistry B. 104: 7471-7482. DOI: 10.1021/Jp0003297  0.575
1999 Brem R, Dill KA. The effect of multiple binding modes on empirical modeling of ligand docking to proteins. Protein Science : a Publication of the Protein Society. 8: 1134-43. PMID 10338024 DOI: 10.1110/Ps.8.5.1134  0.433
1995 Sun S, Brem R, Chan HS, Dill KA. Designing amino acid sequences to fold with good hydrophobic cores. Protein Engineering. 8: 1205-13. PMID 8869633 DOI: 10.1093/Protein/8.12.1205  0.422
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