| Year |
Citation |
Score |
| 2023 |
O'Reilly FJ, Graziadei A, Forbrig C, Bremenkamp R, Charles K, Lenz S, Elfmann C, Fischer L, Stülke J, Rappsilber J. Protein complexes in cells by AI-assisted structural proteomics. Molecular Systems Biology. e11544. PMID 36815589 DOI: 10.15252/msb.202311544 |
0.305 |
|
| 2022 |
Repton C, Cullen CF, Costa MFA, Spanos C, Rappsilber J, Ohkura H. The phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin. Plos Genetics. 18: e1009995. PMID 35666772 DOI: 10.1371/journal.pgen.1009995 |
0.321 |
|
| 2021 |
Staneva DP, Carloni R, Auchynnikava T, Tong P, Arulanandam JA, Rappsilber J, Matthews KR, Allshire RC. A systematic analysis of chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination. Genome Research. PMID 34407985 DOI: 10.1101/gr.275368.121 |
0.303 |
|
| 2020 |
O'Reilly FJ, Xue L, Graziadei A, Sinn L, Lenz S, Tegunov D, Blötz C, Singh N, Hagen WJH, Cramer P, Stülke J, Mahamid J, Rappsilber J. In-cell architecture of an actively transcribing-translating expressome. Science (New York, N.Y.). 369: 554-557. PMID 32732422 DOI: 10.1126/Science.Abb3758 |
0.351 |
|
| 2020 |
Schöpp T, Zoch A, Berrens RV, Auchynnikava T, Kabayama Y, Vasiliauskaitė L, Rappsilber J, Allshire RC, O'Carroll D. TEX15 is an essential executor of MIWI2-directed transposon DNA methylation and silencing. Nature Communications. 11: 3739. PMID 32719317 DOI: 10.1038/S41467-020-17372-5 |
0.338 |
|
| 2020 |
Zoch A, Auchynnikava T, Berrens RV, Kabayama Y, Schöpp T, Heep M, Vasiliauskaitė L, Pérez-Rico YA, Cook AG, Shkumatava A, Rappsilber J, Allshire RC, O'Carroll D. SPOCD1 is an essential executor of piRNA-directed de novo DNA methylation. Nature. PMID 32674113 DOI: 10.1038/S41586-020-2557-5 |
0.32 |
|
| 2020 |
Lee BG, Merkel F, Allegretti M, Hassler M, Cawood C, Lecomte L, O'Reilly FJ, Sinn LR, Gutierrez-Escribano P, Kschonsak M, Bravo S, Nakane T, Rappsilber J, Aragon L, Beck M, et al. Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism. Nature Structural & Molecular Biology. PMID 32661420 DOI: 10.1038/S41594-020-0457-X |
0.376 |
|
| 2020 |
Bloomer RH, Hutchison CE, Bäurle I, Walker J, Fang X, Perera P, Velanis CN, Gümüs S, Spanos C, Rappsilber J, Feng X, Goodrich J, Dean C. The epigenetic regulator ICU11 as an accessory protein of Polycomb Repressive Complex 2. Proceedings of the National Academy of Sciences of the United States of America. PMID 32601198 DOI: 10.1073/Pnas.1920621117 |
0.363 |
|
| 2020 |
Delan-Forino C, Spanos C, Rappsilber J, Tollervey D. Substrate specificity of the TRAMP nuclear surveillance complexes. Nature Communications. 11: 3122. PMID 32561742 DOI: 10.1038/S41467-020-16965-4 |
0.368 |
|
| 2020 |
Velanis CN, Perera P, Thomson B, de Leau E, Liang SC, Hartwig B, Förderer A, Thornton H, Arede P, Chen J, Webb KM, Gümüs S, De Jaeger G, Page CA, Hancock CN, ... ... Rappsilber J, et al. The domesticated transposase ALP2 mediates formation of a novel Polycomb protein complex by direct interaction with MSI1, a core subunit of Polycomb Repressive Complex 2 (PRC2). Plos Genetics. 16: e1008681. PMID 32463832 DOI: 10.1371/Journal.Pgen.1008681 |
0.411 |
|
| 2020 |
Consolati T, Locke J, Roostalu J, Chen ZA, Gannon J, Asthana J, Lim WM, Martino F, Cvetkovic MA, Rappsilber J, Costa A, Surrey T. Microtubule Nucleation Properties of Single Human γTuRCs Explained by Their Cryo-EM Structure. Developmental Cell. PMID 32433913 DOI: 10.1016/J.Devcel.2020.04.019 |
0.354 |
|
| 2020 |
Medina-Pritchard B, Lazou V, Zou J, Byron O, Abad MA, Rappsilber J, Heun P, Jeyaprakash AA. Structural basis for centromere maintenance by Drosophila CENP-A chaperone CAL1. The Embo Journal. e103234. PMID 32134144 DOI: 10.15252/Embj.2019103234 |
0.354 |
|
| 2020 |
Müller F, Rappsilber J. A protocol for studying structural dynamics of proteins by quantitative crosslinking mass spectrometry and data-independent acquisition. Journal of Proteomics. 218: 103721. PMID 32109607 DOI: 10.1016/J.Jprot.2020.103721 |
0.378 |
|
| 2020 |
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, ... ... Rappsilber J, et al. Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins. 88: 540. PMID 31977133 DOI: 10.1002/Prot.25867 |
0.302 |
|
| 2020 |
Singh PP, Shukla M, White SA, Lafos M, Tong P, Auchynnikava T, Spanos C, Rappsilber J, Pidoux AL, Allshire RC. Hap2-Ino80-facilitated transcription promotes de novo establishment of CENP-A chromatin. Genes & Development. PMID 31919190 DOI: 10.1101/Gad.332536.119 |
0.336 |
|
| 2019 |
Kaiser CJO, Peters C, Schmid PWN, Stavropoulou M, Zou J, Dahiya V, Mymrikov EV, Rockel B, Asami S, Haslbeck M, Rappsilber J, Reif B, Zacharias M, Buchner J, Weinkauf S. The structure and oxidation of the eye lens chaperone αA-crystallin. Nature Structural & Molecular Biology. PMID 31792453 DOI: 10.1038/S41594-019-0332-9 |
0.335 |
|
| 2019 |
Ryl PSJ, Bohlke-Schneider M, Lenz S, Fischer L, Budzinski L, Stuiver M, Mendes MML, Sinn L, O'Reilly FJ, Rappsilber J. In Situ Structural Restraints from Crosslinking Mass Spectrometry in Human Mitochondria. Journal of Proteome Research. PMID 31746214 DOI: 10.1021/Acs.Jproteome.9B00541 |
0.382 |
|
| 2019 |
Kustatscher G, Grabowski P, Schrader TA, Passmore JB, Schrader M, Rappsilber J. Co-regulation map of the human proteome enables identification of protein functions. Nature Biotechnology. 37: 1361-1371. PMID 31690884 DOI: 10.1038/S41587-019-0298-5 |
0.39 |
|
| 2019 |
Shakeel S, Rajendra E, Alcón P, O'Reilly F, Chorev DS, Maslen S, Degliesposti G, Russo CJ, He S, Hill CH, Skehel JM, Scheres SHW, Patel KJ, Rappsilber J, Robinson CV, et al. Structure of the Fanconi anaemia monoubiquitin ligase complex. Nature. PMID 31666700 DOI: 10.1038/S41586-019-1703-4 |
0.382 |
|
| 2019 |
Abad MA, Ruppert JG, Buzuk L, Wear M, Zou J, Webb KM, Kelly DA, Voigt P, Rappsilber J, Earnshaw WC, Jeyaprakash AA. Borealin-nucleosome interaction secures chromosome association of the chromosomal passenger complex. The Journal of Cell Biology. PMID 31570499 DOI: 10.1083/Jcb.201905040 |
0.317 |
|
| 2019 |
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, ... ... Rappsilber J, et al. Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins. PMID 31569265 DOI: 10.1002/Prot.25816 |
0.309 |
|
| 2019 |
Mendes ML, Fischer L, Chen ZA, Barbon M, O'Reilly FJ, Giese SH, Bohlke-Schneider M, Belsom A, Dau T, Combe CW, Graham M, Eisele MR, Baumeister W, Speck C, Rappsilber J. An integrated workflow for crosslinking mass spectrometry. Molecular Systems Biology. 15: e8994. PMID 31556486 DOI: 10.15252/Msb.20198994 |
0.373 |
|
| 2019 |
Makarov AA, Zou J, Houston DR, Spanos C, Solovyova AS, Cardenal-Peralta C, Rappsilber J, Schirmer EC. Lamin A molecular compression and sliding as mechanisms behind nucleoskeleton elasticity. Nature Communications. 10: 3056. PMID 31296869 DOI: 10.1038/S41467-019-11063-6 |
0.322 |
|
| 2019 |
Leong SL, Lynch EM, Zou J, Tay YD, Borek WE, Tuijtel MW, Rappsilber J, Sawin KE. Reconstitution of Microtubule Nucleation In Vitro Reveals Novel Roles for Mzt1. Current Biology : Cb. 29: 2199-2207.e10. PMID 31287970 DOI: 10.1016/J.Cub.2019.05.058 |
0.384 |
|
| 2019 |
Müller F, Graziadei A, Rappsilber J. Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes. Analytical Chemistry. 91: 9041-9048. PMID 31274288 DOI: 10.1021/Acs.Analchem.9B01339 |
0.314 |
|
| 2019 |
Sajini AA, Choudhury NR, Wagner RE, Bornelöv S, Selmi T, Spanos C, Dietmann S, Rappsilber J, Michlewski G, Frye M. Loss of 5-methylcytosine alters the biogenesis of vault-derived small RNAs to coordinate epidermal differentiation. Nature Communications. 10: 2550. PMID 31186410 DOI: 10.1038/S41467-019-10020-7 |
0.346 |
|
| 2019 |
Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, ... ... Rappsilber J, et al. The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. Analytical Chemistry. PMID 31045356 DOI: 10.1021/Acs.Analchem.9B00658 |
0.348 |
|
| 2019 |
Plowman R, Singh N, Tromer EC, Payan A, Duro E, Spanos C, Rappsilber J, Snel B, Kops GJPL, Corbett KD, Marston AL. The molecular basis of monopolin recruitment to the kinetochore. Chromosoma. PMID 31037469 DOI: 10.1007/S00412-019-00700-0 |
0.385 |
|
| 2019 |
Galander S, Barton RE, Borek WE, Spanos C, Kelly DA, Robertson D, Rappsilber J, Marston AL. Reductional Meiosis I Chromosome Segregation Is Established by Coordination of Key Meiotic Kinases. Developmental Cell. PMID 31031198 DOI: 10.1016/J.Devcel.2019.04.003 |
0.307 |
|
| 2019 |
Shchepachev V, Bresson S, Spanos C, Petfalski E, Fischer L, Rappsilber J, Tollervey D. Defining the RNA interactome by total RNA-associated protein purification. Molecular Systems Biology. 15: e8689. PMID 30962360 DOI: 10.15252/Msb.20188689 |
0.35 |
|
| 2019 |
Dau T, Gupta K, Berger I, Rappsilber J. Sequential digestion with Trypsin and Elastase in cross-linking/mass spectrometry. Analytical Chemistry. PMID 30817130 DOI: 10.1021/Acs.Analchem.8B05222 |
0.408 |
|
| 2019 |
Tay YD, Leda M, Spanos C, Rappsilber J, Goryachev AB, Sawin KE. Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex. Cell Reports. 26: 1654-1667.e7. PMID 30726745 DOI: 10.1016/J.Celrep.2019.01.027 |
0.328 |
|
| 2019 |
Winz ML, Peil L, Turowski TW, Rappsilber J, Tollervey D. Molecular interactions between Hel2 and RNA supporting ribosome-associated quality control. Nature Communications. 10: 563. PMID 30718516 DOI: 10.1038/S41467-019-08382-Z |
0.327 |
|
| 2019 |
Müller F, Kolbowski L, Bernhardt OM, Reiter L, Rappsilber J. Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry. Molecular & Cellular Proteomics. 18: 786-795. PMID 30651306 DOI: 10.1074/Mcp.Tir118.001276 |
0.382 |
|
| 2019 |
Giese SH, Belsom A, Sinn L, Fischer L, Rappsilber J. Noncovalently Associated Peptides Observed during Liquid Chromatography-Mass Spectrometry and Their Effect on Cross-Link Analyses Analytical Chemistry. 91: 2678-2685. PMID 30649854 DOI: 10.1021/Acs.Analchem.8B04037 |
0.32 |
|
| 2019 |
Grabowski P, Hesse S, Hollizeck S, Rohlfs M, Behrends U, Sherkat R, Tamary H, Ünal E, Somech R, Patıroğlu T, Canzar S, van der Werff Ten Bosch J, Klein C, Rappsilber J. Proteome analysis of human neutrophil granulocytes from patients with monogenic disease using data-independent acquisition. Molecular & Cellular Proteomics : McP. PMID 30630937 DOI: 10.1074/Mcp.Ra118.001141 |
0.302 |
|
| 2019 |
McHugh T, Zou J, Volkov VA, Bertin A, Talapatra SK, Rappsilber J, Dogterom M, Welburn JPI. The depolymerase activity of MCAK shows a graded response to Aurora B kinase phosphorylation through allosteric regulation. Journal of Cell Science. 132. PMID 30578316 DOI: 10.1242/Jcs.228353 |
0.313 |
|
| 2019 |
Chen ZA, Rappsilber J. Quantitative cross-linking/mass spectrometry to elucidate structural changes in proteins and their complexes. Nature Protocols. 14: 171-201. PMID 30559374 DOI: 10.1038/S41596-018-0089-3 |
0.393 |
|
| 2019 |
Bürmann F, Lee B, Than T, Sinn L, O'Reilly FJ, Yatskevich S, Rappsilber J, Hu B, Nasmyth K, Löwe J. A folded conformation of MukBEF and cohesin. Nature Structural & Molecular Biology. 26: 227-236. DOI: 10.2210/Pdb6H2X/Pdb |
0.345 |
|
| 2018 |
Anedchenko EA, Samel-Pommerencke A, Tran Nguyen TM, Shahnejat-Bushehri S, Pöpsel J, Lauster D, Herrmann A, Rappsilber J, Cuomo A, Bonaldi T, Ehrenhofer-Murray AE. The kinetochore module Okp1/Ame1 is a reader for N-terminal modifications on the centromeric histone Cse4. The Embo Journal. PMID 30389668 DOI: 10.15252/Embj.201898991 |
0.391 |
|
| 2018 |
O'Reilly FJ, Rappsilber J. Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology. Nature Structural & Molecular Biology. 25: 1000-1008. PMID 30374081 DOI: 10.1038/S41594-018-0147-0 |
0.342 |
|
| 2018 |
Chen ZA, Rappsilber J. Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry. Trends in Biochemical Sciences. PMID 30318267 DOI: 10.1016/J.Tibs.2018.09.003 |
0.36 |
|
| 2018 |
Lenz S, Giese SH, Fischer L, Rappsilber J. In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides. Journal of Proteome Research. 17: 3923-3931. PMID 30293428 DOI: 10.1021/Acs.Jproteome.8B00600 |
0.322 |
|
| 2018 |
Ohta S, Taniguchi T, Sato N, Hamada M, Taniguchi H, Rappsilber J. Quantitative proteomics of the mitotic chromosome scaffold reveals the association of BAZ1B with chromosomal axes. Molecular & Cellular Proteomics : McP. PMID 30266865 DOI: 10.1074/Mcp.Ra118.000923 |
0.329 |
|
| 2018 |
Ongey EL, Giessmann RT, Fons M, Rappsilber J, Adrian L, Neubauer P. Heterologous Biosynthesis, Modifications and Structural Characterization of Ruminococcin-A, a Lanthipeptide From the Gut Bacterium E1, in . Frontiers in Microbiology. 9: 1688. PMID 30093894 DOI: 10.3389/Fmicb.2018.01688 |
0.333 |
|
| 2018 |
Bao XX, Spanos C, Kojidani T, Lynch EM, Rappsilber J, Hiraoka Y, Haraguchi T, Sawin KE. Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore. Elife. 7. PMID 29809148 DOI: 10.7554/Elife.33465 |
0.427 |
|
| 2018 |
Schneider M, Belsom A, Rappsilber J. Protein Tertiary Structure by Crosslinking/Mass Spectrometry. Trends in Biochemical Sciences. PMID 29395654 DOI: 10.1016/J.Tibs.2017.12.006 |
0.355 |
|
| 2018 |
Blyth J, Makrantoni V, Barton RE, Spanos C, Rappsilber J, Marston AL. Genes Important for Meiosis Identified Through a Functional Genomics Screen. Genetics. 208: 589-603. PMID 29259000 DOI: 10.1534/Genetics.117.300527 |
0.305 |
|
| 2018 |
Serikawa T, Spanos C, Hacht Av, Budisa N, Rappsilber J, Kurreck J. Comprehensive identification of proteins binding to RNA G-quadruplex motifs in the 5′ UTR of tumor-associated mRNAs Biochimie. 144: 169-184. PMID 29129743 DOI: 10.1016/J.Biochi.2017.11.003 |
0.38 |
|
| 2018 |
Bao XX, Spanos C, Kojidani T, Lynch EM, Rappsilber J, Hiraoka Y, Haraguchi T, Sawin KE. Author response: Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore Elife. DOI: 10.7554/Elife.33465.035 |
0.325 |
|
| 2017 |
Müller F, Fischer L, Chen ZA, Auchynnikava T, Rappsilber J. On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 29256016 DOI: 10.1007/S13361-017-1837-2 |
0.35 |
|
| 2017 |
Choudhury NR, Heikel G, Trubitsyna M, Kubik P, Nowak JS, Webb S, Granneman S, Spanos C, Rappsilber J, Castello A, Michlewski G. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Bmc Biology. 15: 105. PMID 29117863 DOI: 10.1186/S12915-017-0444-9 |
0.302 |
|
| 2017 |
Gupta K, Watson AA, Baptista T, Scheer E, Chambers AL, Koehler C, Zou J, Obong-Ebong I, Kandiah E, Temblador A, Round A, Forest E, Man P, Bieniossek C, Laue ED, ... ... Rappsilber J, et al. Architecture of TAF11/TAF13/TBP complex suggests novel regulation properties of general transcription factor TFIID. Elife. 6. PMID 29111974 DOI: 10.7554/Elife.30395 |
0.411 |
|
| 2017 |
Combe CW, Sivade MD, Hermjakob H, Heimbach J, Meldal BHM, Micklem G, Orchard S, Rappsilber J. ComplexViewer: visualization of curated macromolecular complexes. Bioinformatics. 33: 3673-3675. PMID 29036573 DOI: 10.1093/Bioinformatics/Btx497 |
0.339 |
|
| 2017 |
Milligan L, Sayou C, Tuck A, Auchynnikava T, Reid JEA, Alexander R, Alves FL, Allshire R, Spanos C, Rappsilber J, Beggs JD, Kudla G, Tollervey D. RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit. Elife. 6. PMID 29027900 DOI: 10.7554/Elife.27082 |
0.321 |
|
| 2017 |
Beaven R, Bastos RN, Spanos C, Romé P, Cullen CF, Rappsilber J, Giet R, Goshima G, Ohkura H. 14-3-3 regulation of Ncd reveals a new mechanism for targeting proteins to the spindle in oocytes. Journal of Cell Biology. 216: 3029-3039. PMID 28860275 DOI: 10.1083/Jcb.201704120 |
0.355 |
|
| 2017 |
Kustatscher G, Grabowski P, Rappsilber J. Pervasive coexpression of spatially proximal genes is buffered at the protein level. Molecular Systems Biology. 13: 937. PMID 28835372 DOI: 10.15252/Msb.20177548 |
0.315 |
|
| 2017 |
Kastritis PL, O'Reilly FJ, Bock T, Li Y, Rogon MZ, Buczak K, Romanov N, Betts MJ, Bui KH, Hagen WJ, Hennrich ML, Mackmull MT, Rappsilber J, Russell RB, Bork P, et al. Capturing protein communities by structural proteomics in a thermophilic eukaryote. Molecular Systems Biology. 13: 936. PMID 28743795 DOI: 10.15252/Msb.20167412 |
0.396 |
|
| 2017 |
Vizcaíno JA, Mayer G, Perkins SR, Barsnes H, Vaudel M, Perez-Riverol Y, Ternent T, Uszkoreit J, Eisenacher M, Fischer L, Rappsilber J, Netz E, Walzer M, Kohlbacher O, Leitner A, et al. The mzIdentML data standard version 1.2, supporting advances in proteome informatics. Molecular & Cellular Proteomics : McP. PMID 28515314 DOI: 10.1074/Mcp.M117.068429 |
0.312 |
|
| 2017 |
Davis MP, Carrieri C, Saini HK, van Dongen S, Leonardi T, Bussotti G, Monahan JM, Auchynnikava T, Bitetti A, Rappsilber J, Allshire RC, Shkumatava A, O'Carroll D, Enright AJ. Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution. Embo Reports. PMID 28500258 DOI: 10.15252/Embr.201744059 |
0.327 |
|
| 2017 |
Belsom A, Mudd G, Giese S, Auer M, Rappsilber J. Complementary Benzophenone Cross-Linking/Mass Spectrometry Photochemistry. Analytical Chemistry. 89: 5319-5324. PMID 28430416 DOI: 10.1021/Acs.Analchem.6B04938 |
0.332 |
|
| 2017 |
Kolbowski L, Mendes ML, Rappsilber J. Optimizing the Parameters Governing the Fragmentation of Cross-Linked Peptides in a Tribrid Mass Spectrometer Analytical Chemistry. 89: 5311-5318. PMID 28402676 DOI: 10.1021/Acs.Analchem.6B04935 |
0.334 |
|
| 2017 |
Chen JW, Chen ZA, Rogala KB, Metz J, Deane CM, Rappsilber J, Wakefield JG. Cross-linking mass spectrometry identifies new interfaces of Augmin required to localise the γ-Tubulin Ring Complex to the mitotic spindle. Biology Open. PMID 28351835 DOI: 10.1242/Bio.022905 |
0.42 |
|
| 2017 |
Fischer L, Rappsilber J. Quirks of Error Estimation in Cross-Linking/Mass Spectrometry. Analytical Chemistry. 89: 3829-3833. PMID 28267312 DOI: 10.1021/Acs.Analchem.6B03745 |
0.331 |
|
| 2017 |
de Castro IJ, Budzak J, Di Giacinto ML, Ligammari L, Gokhan E, Spanos C, Moralli D, Richardson C, de Las Heras JI, Salatino S, Schirmer EC, Ullman KS, Bickmore WA, Green C, Rappsilber J, et al. Repo-Man/PP1 regulates heterochromatin formation in interphase. Nature Communications. 8: 14048. PMID 28091603 DOI: 10.1038/Ncomms14048 |
0.391 |
|
| 2017 |
Montaño-Gutierrez LF, Ohta S, Kustatscher G, Earnshaw WC, Rappsilber J. Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data. Molecular Biology of the Cell. PMID 28057767 DOI: 10.1091/Mbc.E16-06-0370 |
0.41 |
|
| 2017 |
Gupta K, Watson AA, Baptista T, Scheer E, Chambers AL, Koehler C, Zou J, Obong-Ebong I, Kandiah E, Temblador A, Round A, Forest E, Man P, Bieniossek C, Laue ED, ... ... Rappsilber J, et al. Author response: Architecture of TAF11/TAF13/TBP complex suggests novel regulation properties of general transcription factor TFIID Elife. DOI: 10.7554/Elife.30395.028 |
0.308 |
|
| 2016 |
Botte M, Zaccai NR, Nijeholt JL, Martin R, Knoops K, Papai G, Zou J, Deniaud A, Karuppasamy M, Jiang Q, Roy AS, Schulten K, Schultz P, Rappsilber J, Zaccai G, et al. A central cavity within the holo-translocon suggests a mechanism for membrane protein insertion. Scientific Reports. 6: 38399. PMID 27924919 DOI: 10.1038/Srep38399 |
0.339 |
|
| 2016 |
Sheppard C, Blombach F, Belsom A, Schulz S, Daviter T, Smollett K, Mahieu E, Erdmann S, Tinnefeld P, Garrett RA, Grohmann D, Rappsilber J, Werner F. Repression of RNA polymerase by the archaeo-viral regulator ORF145/RIP. Nature Communications. 7: 13595-13595. PMID 27882920 DOI: 10.1038/Ncomms13595 |
0.334 |
|
| 2016 |
Koehler C, Sauter PF, Wawryszyn M, Girona GE, Gupta K, Landry JJ, Fritz MH, Radic K, Hoffmann JE, Chen ZA, Zou J, Tan PS, Galik B, Junttila S, Stolt-Bergner P, ... ... Rappsilber J, et al. Genetic code expansion for multiprotein complex engineering. Nature Methods. PMID 27749839 DOI: 10.1038/Nmeth.4032 |
0.371 |
|
| 2016 |
Abad MA, Zou J, Medina-Pritchard B, Nigg EA, Rappsilber J, Santamaria A, Jeyaprakash AA. Ska3 Ensures Timely Mitotic Progression by Interacting Directly With Microtubules and Ska1 Microtubule Binding Domain. Scientific Reports. 6: 34042. PMID 27667719 DOI: 10.1038/Srep34042 |
0.367 |
|
| 2016 |
Kustatscher G, Rappsilber J. Compositional Dynamics: Defining the Fuzzy Cell. Trends in Cell Biology. 26: 800-803. PMID 27651031 DOI: 10.1016/J.Tcb.2016.08.012 |
0.3 |
|
| 2016 |
Giese SH, Belsom A, Rappsilber J. Optimized Fragmentation Regime for Diazirine Photo-Cross-Linked Peptides. Analytical Chemistry. 88: 8239-8247. PMID 27454319 DOI: 10.1021/Acs.Analchem.6B02082 |
0.357 |
|
| 2016 |
Chen ZA, Fischer L, Cox J, Rappsilber J. Quantitative cross-linking/mass spectrometry using isotope-labeled cross-linkers and MaxQuant. Molecular & Cellular Proteomics : McP. PMID 27302889 DOI: 10.1074/Mcp.M115.056481 |
0.325 |
|
| 2016 |
Much C, Auchynnikava T, Pavlinic D, Buness A, Rappsilber J, Benes V, Allshire R, O'Carroll D. Endogenous Mouse Dicer Is an Exclusively Cytoplasmic Protein. Plos Genetics. 12: e1006095. PMID 27254021 DOI: 10.1371/Journal.Pgen.1006095 |
0.355 |
|
| 2016 |
McCaughan UM, Jayachandran U, Shchepachev V, Chen ZA, Rappsilber J, Tollervey D, Cook AG. Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases. Nature Communications. 7: 11789. PMID 27250689 DOI: 10.1038/Ncomms11789 |
0.334 |
|
| 2016 |
Belsom A, Schneider M, Brock O, Rappsilber J. Blind Evaluation of Hybrid Protein Structure Analysis Methods based on Cross-Linking. Trends in Biochemical Sciences. PMID 27242194 DOI: 10.1016/J.Tibs.2016.05.005 |
0.322 |
|
| 2016 |
Ohta S, Montaňo-Gutierrez LF, Alves FL, Ogawa H, Toramoto I, Sato N, Morrison CG, Takeda S, Hudson DF, Rappsilber J, Earnshaw WC. Proteomics analysis with a nano Random Forest approach reveals novel functional interactions regulated by SMC complexes on mitotic chromosomes. Molecular & Cellular Proteomics : McP. PMID 27231315 DOI: 10.1074/Mcp.M116.057885 |
0.394 |
|
| 2016 |
Legal T, Zou J, Sochaj A, Rappsilber J, Welburn JP. Molecular architecture of the Dam1 complex-microtubule interaction. Open Biology. 6. PMID 26962051 DOI: 10.1098/Rsob.150237 |
0.385 |
|
| 2016 |
Schneider M, Belsom A, Rappsilber J, Brock O. Blind Testing of Cross-linking/Mass Spectrometry Hybrid Methods in CASP11. Proteins. PMID 26945814 DOI: 10.1002/Prot.25028 |
0.342 |
|
| 2016 |
Wood L, Booth DG, Vargiu G, Ohta S, deLima Alves F, Samejima K, Fukagawa T, Rappsilber J, Earnshaw WC. Auxin/AID versus conventional knockouts: distinguishing the roles of CENP-T/W in mitotic kinetochore assembly and stability. Open Biology. 6. PMID 26791246 DOI: 10.1098/Rsob.150230 |
0.391 |
|
| 2016 |
Giese SH, Fischer L, Rappsilber J. A Study into the Collision-induced Dissociation (CID) Behavior of Cross-Linked Peptides. Molecular & Cellular Proteomics : McP. 15: 1094-104. PMID 26719564 DOI: 10.1074/Mcp.M115.049296 |
0.322 |
|
| 2016 |
Kustatscher G, Grabowski P, Rappsilber J. Multiclassifier combinatorial proteomics of organelle shadows at the example of mitochondria in chromatin data. Proteomics. 16: 393-401. PMID 26510496 DOI: 10.1002/Pmic.201500267 |
0.355 |
|
| 2016 |
Imhof A, Rappsilber J. A Focus on Chromatin Proteomics Proteomics. 16: 379-380. DOI: 10.1002/Pmic.201670033 |
0.331 |
|
| 2015 |
Samejima I, Spanos C, Alves FL, Hori T, Perpelescu M, Zou J, Rappsilber J, Fukagawa T, Earnshaw WC. Whole-proteome genetic analysis of dependencies in assembly of a vertebrate kinetochore. The Journal of Cell Biology. PMID 26668330 DOI: 10.1083/Jcb.201508072 |
0.392 |
|
| 2015 |
Herbert AP, Makou E, Chen ZA, Kerr H, Richards A, Rappsilber J, Barlow PN. Complement Evasion Mediated by Enhancement of Captured Factor H: Implications for Protection of Self-Surfaces from Complement. Journal of Immunology (Baltimore, Md. : 1950). 195: 4986-98. PMID 26459349 DOI: 10.4049/Jimmunol.1501388 |
0.336 |
|
| 2015 |
Tomko RJ, Taylor DW, Chen ZA, Wang HW, Rappsilber J, Hochstrasser M. A Single α Helix Drives Extensive Remodeling of the Proteasome Lid and Completion of Regulatory Particle Assembly. Cell. 163: 432-44. PMID 26451487 DOI: 10.1016/J.Cell.2015.09.022 |
0.349 |
|
| 2015 |
Belsom A, Schneider M, Fischer L, Brock O, Rappsilber J. Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology. Molecular & Cellular Proteomics : McP. PMID 26385339 DOI: 10.1074/Mcp.M115.048504 |
0.347 |
|
| 2015 |
Borek WE, Groocock LM, Samejima I, Zou J, de Lima Alves F, Rappsilber J, Sawin KE. Mto2 multisite phosphorylation inactivates non-spindle microtubule nucleation complexes during mitosis. Nature Communications. 6: 7929. PMID 26243668 DOI: 10.1038/Ncomms8929 |
0.306 |
|
| 2015 |
Barysz H, Kim JH, Chen ZA, Hudson DF, Rappsilber J, Gerloff DL, Earnshaw WC. Three-dimensional topology of the SMC2/SMC4 subcomplex from chicken condensin I revealed by cross-linking and molecular modelling. Open Biology. 5: 150005. PMID 25716199 DOI: 10.1098/Rsob.150005 |
0.414 |
|
| 2015 |
Trowitzsch S, Viola C, Scheer E, Conic S, Chavant V, Fournier M, Papai G, Ebong IO, Schaffitzel C, Zou J, Haffke M, Rappsilber J, Robinson CV, Schultz P, Tora L, et al. Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules. Nature Communications. 6: 6011. PMID 25586196 DOI: 10.1038/Ncomms7011 |
0.425 |
|
| 2014 |
Choudhury NR, Nowak JS, Zuo J, Rappsilber J, Spoel SH, Michlewski G. Trim25 Is an RNA-Specific Activator of Lin28a/TuT4-Mediated Uridylation. Cell Reports. 9: 1265-72. PMID 25457611 DOI: 10.1016/J.Celrep.2014.10.017 |
0.332 |
|
| 2014 |
Turowski TW, Lebaron S, Zhang E, Peil L, Dudnakova T, Petfalski E, Granneman S, Rappsilber J, Tollervey D. Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits. Nucleic Acids Research. 42: 12189-99. PMID 25294836 DOI: 10.1093/Nar/Gku878 |
0.312 |
|
| 2014 |
Bayne EH, Bijos DA, White SA, de Lima Alves F, Rappsilber J, Allshire RC. A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast. Genome Biology. 15: 481. PMID 25274039 DOI: 10.1186/S13059-014-0481-4 |
0.369 |
|
| 2014 |
Kostan J, Salzer U, Orlova A, Törö I, Hodnik V, Senju Y, Zou J, Schreiner C, Steiner J, Meriläinen J, Nikki M, Virtanen I, Carugo O, Rappsilber J, Lappalainen P, et al. Direct interaction of actin filaments with F-BAR protein pacsin2. Embo Reports. 15: 1154-62. PMID 25216944 DOI: 10.15252/Embr.201439267 |
0.334 |
|
| 2014 |
Sarangapani KK, Duro E, Deng Y, Alves Fde L, Ye Q, Opoku KN, Ceto S, Rappsilber J, Corbett KD, Biggins S, Marston AL, Asbury CL. Sister kinetochores are mechanically fused during meiosis I in yeast. Science (New York, N.Y.). 346: 248-51. PMID 25213378 DOI: 10.1126/Science.1256729 |
0.356 |
|
| 2014 |
Kustatscher G, Wills KL, Furlan C, Rappsilber J. Chromatin enrichment for proteomics. Nature Protocols. 9: 2090-9. PMID 25101823 DOI: 10.1038/Nprot.2014.142 |
0.366 |
|
| 2014 |
Kotzer-Nevo H, de Lima Alves F, Rappsilber J, Sperling J, Sperling R. Supraspliceosomes at defined functional states portray the pre-assembled nature of the pre-mRNA processing machine in the cell nucleus. International Journal of Molecular Sciences. 15: 11637-64. PMID 24983480 DOI: 10.3390/Ijms150711637 |
0.342 |
|
| 2014 |
Williams K, Christensen J, Rappsilber J, Nielsen AL, Johansen JV, Helin K. The histone lysine demethylase JMJD3/KDM6B is recruited to p53 bound promoters and enhancer elements in a p53 dependent manner. Plos One. 9: e96545. PMID 24797517 DOI: 10.1371/Journal.Pone.0096545 |
0.326 |
|
| 2014 |
Subramanian L, Toda NR, Rappsilber J, Allshire RC. Eic1 links Mis18 with the CCAN/Mis6/Ctf19 complex to promote CENP-A assembly. Open Biology. 4: 140043. PMID 24789708 DOI: 10.1098/Rsob.140043 |
0.388 |
|
| 2014 |
Alabert C, Bukowski-Wills JC, Lee SB, Kustatscher G, Nakamura K, de Lima Alves F, Menard P, Mejlvang J, Rappsilber J, Groth A. Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components. Nature Cell Biology. 16: 281-93. PMID 24561620 DOI: 10.1038/Ncb2918 |
0.37 |
|
| 2014 |
Kustatscher G, Hégarat N, Wills KL, Furlan C, Bukowski-Wills JC, Hochegger H, Rappsilber J. Proteomics of a fuzzy organelle: interphase chromatin. The Embo Journal. 33: 648-64. PMID 24534090 DOI: 10.1002/Embj.201387614 |
0.408 |
|
| 2014 |
Verzijlbergen KF, Nerusheva OO, Kelly D, Kerr A, Clift D, de Lima Alves F, Rappsilber J, Marston AL. Shugoshin biases chromosomes for biorientation through condensin recruitment to the pericentromere. Elife. 3: e01374. PMID 24497542 DOI: 10.7554/Elife.01374 |
0.337 |
|
| 2014 |
Abad MA, Medina B, Santamaria A, Zou J, Plasberg-Hill C, Madhumalar A, Jayachandran U, Redli PM, Rappsilber J, Nigg EA, Jeyaprakash AA. Structural basis for microtubule recognition by the human kinetochore Ska complex. Nature Communications. 5: 2964. PMID 24413531 DOI: 10.1038/Ncomms3964 |
0.358 |
|
| 2014 |
Sarangapani K, Duro E, Deng Y, Opoku K, de Lima Alves F, Rappsilber J, Ye Q, Corbett K, Biggins S, Marston A, Asbury C. Biophysical Measurements Reveal Fusion of Sister Kinetochores during Meiosis I Biophysical Journal. 106: 167a. DOI: 10.1016/J.Bpj.2013.11.951 |
0.307 |
|
| 2014 |
Biggins S, Sarangapani K, Duro E, Deng Y, Opoku K, de Lima Alves F, Rappsilber J, Marston A, Asbury C. Direct Evidence for Sister Kinetochore Fusion in Meiosis I Biophysical Journal. 106: 637a. DOI: 10.1016/J.Bpj.2013.11.3526 |
0.343 |
|
| 2013 |
Syred HM, Welburn J, Rappsilber J, Ohkura H. Cell cycle regulation of microtubule interactomes: multi-layered regulation is critical for the interphase/mitosis transition. Molecular & Cellular Proteomics : McP. 12: 3135-47. PMID 23893837 DOI: 10.1074/Mcp.M113.028563 |
0.313 |
|
| 2013 |
Fischer L, Chen ZA, Rappsilber J. Quantitative cross-linking/mass spectrometry using isotope-labelled cross-linkers. Journal of Proteomics. 88: 120-8. PMID 23541715 DOI: 10.1016/J.Jprot.2013.03.005 |
0.36 |
|
| 2013 |
Fernius J, Nerusheva OO, Galander S, Alves Fde L, Rappsilber J, Marston AL. Cohesin-dependent association of scc2/4 with the centromere initiates pericentromeric cohesion establishment. Current Biology : Cb. 23: 599-606. PMID 23499533 DOI: 10.1016/J.Cub.2013.02.022 |
0.328 |
|
| 2013 |
Segerstolpe Å, Granneman S, Björk P, de Lima Alves F, Rappsilber J, Andersson C, Högbom M, Tollervey D, Wieslander L. Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome. Nucleic Acids Research. 41: 1178-90. PMID 23193268 DOI: 10.1093/Nar/Gks1129 |
0.374 |
|
| 2012 |
McDermott SM, Meignin C, Rappsilber J, Davis I. Drosophila Syncrip binds the gurken mRNA localisation signal and regulates localised transcripts during axis specification. Biology Open. 1: 488-97. PMID 23213441 DOI: 10.1242/Bio.2012885 |
0.346 |
|
| 2012 |
Rappsilber J. Cross-linking/mass spectrometry as a new field and the proteomics information mountain of tomorrow. Expert Review of Proteomics. 9: 485-7. PMID 23194264 DOI: 10.1586/Epr.12.44 |
0.317 |
|
| 2012 |
Samejima K, Samejima I, Vagnarelli P, Ogawa H, Vargiu G, Kelly DA, de Lima Alves F, Kerr A, Green LC, Hudson DF, Ohta S, Cooke CA, Farr CJ, Rappsilber J, Earnshaw WC. Mitotic chromosomes are compacted laterally by KIF4 and condensin and axially by topoisomerase IIα. The Journal of Cell Biology. 199: 755-70. PMID 23166350 DOI: 10.1083/Jcb.201202155 |
0.324 |
|
| 2012 |
Lauber MA, Rappsilber J, Reilly JP. Dynamics of ribosomal protein S1 on a bacterial ribosome with cross-linking and mass spectrometry. Molecular & Cellular Proteomics : McP. 11: 1965-76. PMID 23033476 DOI: 10.1074/Mcp.M112.019562 |
0.388 |
|
| 2012 |
Soares DC, Bradshaw NJ, Zou J, Kennaway CK, Hamilton RS, Chen ZA, Wear MA, Blackburn EA, Bramham J, Böttcher B, Millar JK, Barlow PN, Walkinshaw MD, Rappsilber J, Porteous DJ. The mitosis and neurodevelopment proteins NDE1 and NDEL1 form dimers, tetramers, and polymers with a folded back structure in solution. The Journal of Biological Chemistry. 287: 32381-93. PMID 22843697 DOI: 10.1074/Jbc.M112.393439 |
0.389 |
|
| 2012 |
Galli GG, Honnens de Lichtenberg K, Carrara M, Hans W, Wuelling M, Mentz B, Multhaupt HA, Fog CK, Jensen KT, Rappsilber J, Vortkamp A, Coulton L, Fuchs H, Gailus-Durner V, HrabÄ› de Angelis M, et al. Prdm5 regulates collagen gene transcription by association with RNA polymerase II in developing bone. Plos Genetics. 8: e1002711. PMID 22589746 DOI: 10.1371/Journal.Pgen.1002711 |
0.318 |
|
| 2012 |
Shepperd LA, Meadows JC, Sochaj AM, Lancaster TC, Zou J, Buttrick GJ, Rappsilber J, Hardwick KG, Millar JB. Phosphodependent recruitment of Bub1 and Bub3 to Spc7/KNL1 by Mph1 kinase maintains the spindle checkpoint. Current Biology : Cb. 22: 891-9. PMID 22521786 DOI: 10.1016/J.Cub.2012.03.051 |
0.373 |
|
| 2012 |
Dietrich N, Lerdrup M, Landt E, Agrawal-Singh S, Bak M, Tommerup N, Rappsilber J, Södersten E, Hansen K. REST-mediated recruitment of polycomb repressor complexes in mammalian cells. Plos Genetics. 8: e1002494. PMID 22396653 DOI: 10.1371/Journal.Pgen.1002494 |
0.332 |
|
| 2012 |
Buscaino A, White SA, Houston DR, Lejeune E, Simmer F, de Lima Alves F, Diyora PT, Urano T, Bayne EH, Rappsilber J, Allshire RC. Raf1 Is a DCAF for the Rik1 DDB1-like protein and has separable roles in siRNA generation and chromatin modification. Plos Genetics. 8: e1002499. PMID 22319459 DOI: 10.1371/Journal.Pgen.1002499 |
0.337 |
|
| 2012 |
Zich J, Sochaj AM, Syred HM, Milne L, Cook AG, Ohkura H, Rappsilber J, Hardwick KG. Kinase activity of fission yeast Mph1 is required for Mad2 and Mad3 to stably bind the anaphase promoting complex. Current Biology : Cb. 22: 296-301. PMID 22281223 DOI: 10.1016/J.Cub.2011.12.049 |
0.337 |
|
| 2012 |
Bradshaw NI, Soares DC, Zou J, Kennaway CK, Chen ZA, Wear MA, Blackburn EA, Böttcher B, Barlow PN, Millar JK, Walkinshaw MD, Rappsilber J, Porteous DJ. 15:30 Structural Elucidation Of Disc1 Pathway Proteins Using Electron Microscopy, Chemical Cross-Linking And Mass Spectroscopy Schizophrenia Research. 136. DOI: 10.1016/S0920-9964(12)70270-0 |
0.325 |
|
| 2011 |
Braun N, Zacharias M, Peschek J, Kastenmüller A, Zou J, Hanzlik M, Haslbeck M, Rappsilber J, Buchner J, Weinkauf S. Multiple molecular architectures of the eye lens chaperone αB-crystallin elucidated by a triple hybrid approach. Proceedings of the National Academy of Sciences of the United States of America. 108: 20491-6. PMID 22143763 DOI: 10.1073/Pnas.1111014108 |
0.323 |
|
| 2011 |
Vagnarelli P, Ribeiro S, Sennels L, Sanchez-Pulido L, de Lima Alves F, Verheyen T, Kelly DA, Ponting CP, Rappsilber J, Earnshaw WC. Repo-Man coordinates chromosomal reorganization with nuclear envelope reassembly during mitotic exit. Developmental Cell. 21: 328-42. PMID 21820363 DOI: 10.1016/J.Devcel.2011.06.020 |
0.368 |
|
| 2011 |
Weber G, Cristão VF, de L Alves F, Santos KF, Holton N, Rappsilber J, Beggs JD, Wahl MC. Mechanism for Aar2p function as a U5 snRNP assembly factor. Genes & Development. 25: 1601-12. PMID 21764848 DOI: 10.1101/Gad.635911 |
0.378 |
|
| 2011 |
Williams K, Christensen J, Pedersen MT, Johansen JV, Cloos PA, Rappsilber J, Helin K. TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity. Nature. 473: 343-8. PMID 21490601 DOI: 10.1038/Nature10066 |
0.317 |
|
| 2011 |
Rappsilber J. The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes. Journal of Structural Biology. 173: 530-40. PMID 21029779 DOI: 10.1016/J.Jsb.2010.10.014 |
0.418 |
|
| 2011 |
Ohta S, Wood L, Bukowski-Wills JC, Rappsilber J, Earnshaw WC. Building mitotic chromosomes. Current Opinion in Cell Biology. 23: 114-21. PMID 20974528 DOI: 10.1016/J.Ceb.2010.09.009 |
0.31 |
|
| 2010 |
Ohta S, Bukowski-Wills JC, Wood L, de Lima Alves F, Chen Z, Rappsilber J, Earnshaw WC. Proteomics of isolated mitotic chromosomes identifies the kinetochore protein Ska3/Rama1. Cold Spring Harbor Symposia On Quantitative Biology. 75: 433-8. PMID 21289047 DOI: 10.1101/Sqb.2010.75.022 |
0.421 |
|
| 2010 |
Anderson HE, Kagansky A, Wardle J, Rappsilber J, Allshire RC, Whitehall SK. Silencing mediated by the Schizosaccharomyces pombe HIRA complex is dependent upon the Hpc2-like protein, Hip4. Plos One. 5: e13488. PMID 20976105 DOI: 10.1371/Journal.Pone.0013488 |
0.433 |
|
| 2010 |
Ohta S, Bukowski-Wills JC, Sanchez-Pulido L, Alves Fde L, Wood L, Chen ZA, Platani M, Fischer L, Hudson DF, Ponting CP, Fukagawa T, Earnshaw WC, Rappsilber J. The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics. Cell. 142: 810-21. PMID 20813266 DOI: 10.1016/J.Cell.2010.07.047 |
0.381 |
|
| 2010 |
Ortiz JO, Brandt F, Matias VR, Sennels L, Rappsilber J, Scheres SH, Eibauer M, Hartl FU, Baumeister W. Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ. The Journal of Cell Biology. 190: 613-21. PMID 20733057 DOI: 10.1083/Jcb.201005007 |
0.31 |
|
| 2010 |
Bicho CC, de Lima Alves F, Chen ZA, Rappsilber J, Sawin KE. A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC). Molecular & Cellular Proteomics : McP. 9: 1567-77. PMID 20460254 DOI: 10.1074/Mcp.M110.000208 |
0.327 |
|
| 2010 |
Kleine-Kohlbrecher D, Christensen J, Vandamme J, Abarrategui I, Bak M, Tommerup N, Shi X, Gozani O, Rappsilber J, Salcini AE, Helin K. A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation. Molecular Cell. 38: 165-78. PMID 20346720 DOI: 10.1016/J.Molcel.2010.03.002 |
0.35 |
|
| 2010 |
Bayne EH, White SA, Kagansky A, Bijos DA, Sanchez-Pulido L, Hoe KL, Kim DU, Park HO, Ponting CP, Rappsilber J, Allshire RC. Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity. Cell. 140: 666-77. PMID 20211136 DOI: 10.1016/J.Cell.2010.01.038 |
0.402 |
|
| 2010 |
Chen ZA, Jawhari A, Fischer L, Buchen C, Tahir S, Kamenski T, Rasmussen M, Lariviere L, Bukowski-Wills JC, Nilges M, Cramer P, Rappsilber J. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. The Embo Journal. 29: 717-26. PMID 20094031 DOI: 10.1038/Emboj.2009.401 |
0.396 |
|
| 2010 |
Kirino Y, Vourekas A, Kim N, de Lima Alves F, Rappsilber J, Klein PS, Jongens TA, Mourelatos Z. Arginine methylation of vasa protein is conserved across phyla. The Journal of Biological Chemistry. 285: 8148-54. PMID 20080973 DOI: 10.1074/Jbc.M109.089821 |
0.4 |
|
| 2010 |
Pasini D, Cloos PA, Walfridsson J, Olsson L, Bukowski JP, Johansen JV, Bak M, Tommerup N, Rappsilber J, Helin K. JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells. Nature. 464: 306-10. PMID 20075857 DOI: 10.1038/Nature08788 |
0.39 |
|
| 2010 |
Kirino Y, Vourekas A, Sayed N, de Lima Alves F, Thomson T, Lasko P, Rappsilber J, Jongens TA, Mourelatos Z. Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization. Rna (New York, N.Y.). 16: 70-8. PMID 19926723 DOI: 10.1261/Rna.1869710 |
0.38 |
|
| 2009 |
Giorgi A, Di Francesco L, Principe S, Mignogna G, Sennels L, Mancone C, Alonzi T, Sbriccoli M, De Pascalis A, Rappsilber J, Cardone F, Pocchiari M, Maras B, Schininà ME. Proteomic profiling of PrP27-30-enriched preparations extracted from the brain of hamsters with experimental scrapie. Proteomics. 9: 3802-14. PMID 19637240 DOI: 10.1002/Pmic.200900085 |
0.346 |
|
| 2009 |
Pidoux AL, Choi ES, Abbott JK, Liu X, Kagansky A, Castillo AG, Hamilton GL, Richardson W, Rappsilber J, He X, Allshire RC. Fission yeast Scm3: A CENP-A receptor required for integrity of subkinetochore chromatin. Molecular Cell. 33: 299-311. PMID 19217404 DOI: 10.1016/J.Molcel.2009.01.019 |
0.346 |
|
| 2008 |
Bayne EH, Portoso M, Kagansky A, Kos-Braun IC, Urano T, Ekwall K, Alves F, Rappsilber J, Allshire RC. Splicing factors facilitate RNAi-directed silencing in fission yeast. Science (New York, N.Y.). 322: 602-6. PMID 18948543 DOI: 10.1126/Science.1164029 |
0.342 |
|
| 2008 |
Hansen KH, Bracken AP, Pasini D, Dietrich N, Gehani SS, Monrad A, Rappsilber J, Lerdrup M, Helin K. A model for transmission of the H3K27me3 epigenetic mark. Nature Cell Biology. 10: 1291-300. PMID 18931660 DOI: 10.1038/Ncb1787 |
0.316 |
|
| 2008 |
Milligan L, Decourty L, Saveanu C, Rappsilber J, Ceulemans H, Jacquier A, Tollervey D. A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts. Molecular and Cellular Biology. 28: 5446-57. PMID 18591258 DOI: 10.1128/Mcb.00463-08 |
0.36 |
|
| 2008 |
Hudson DF, Ohta S, Freisinger T, Macisaac F, Sennels L, Alves F, Lai F, Kerr A, Rappsilber J, Earnshaw WC. Molecular and genetic analysis of condensin function in vertebrate cells. Molecular Biology of the Cell. 19: 3070-9. PMID 18480406 DOI: 10.1091/Mbc.E08-01-0057 |
0.387 |
|
| 2008 |
Ciferri C, Pasqualato S, Screpanti E, Varetti G, Santaguida S, Dos Reis G, Maiolica A, Polka J, De Luca JG, De Wulf P, Salek M, Rappsilber J, Moores CA, Salmon ED, Musacchio A. Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex. Cell. 133: 427-39. PMID 18455984 DOI: 10.1016/J.Cell.2008.03.020 |
0.349 |
|
| 2008 |
Ishihama Y, Schmidt T, Rappsilber J, Mann M, Hartl FU, Kerner MJ, Frishman D. Protein abundance profiling of the Escherichia coli cytosol. Bmc Genomics. 9: 102. PMID 18304323 DOI: 10.1186/1471-2164-9-102 |
0.337 |
|
| 2008 |
Clark C, Phelan M, Chen Z, Rappsilber J, Ogata R, Bramham J, Barlow P. A novel combination of chemical cross-linking, mass spectrometry and NMR reveals the architecture of complement component C7 Molecular Immunology. 45: 4121-4121. DOI: 10.1016/J.Molimm.2008.08.076 |
0.303 |
|
| 2007 |
Rappsilber J, Mann M. Analysis of the topology of protein complexes using cross-linking and mass spectrometry. Csh Protocols. 2007: pdb.prot4594. PMID 21357017 DOI: 10.1101/Pdb.Prot4594 |
0.408 |
|
| 2007 |
Thomson E, Rappsilber J, Tollervey D. Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast. Rna (New York, N.Y.). 13: 2165-74. PMID 17956976 DOI: 10.1261/Rna.747607 |
0.378 |
|
| 2007 |
Maiolica A, Cittaro D, Borsotti D, Sennels L, Ciferri C, Tarricone C, Musacchio A, Rappsilber J. Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching. Molecular & Cellular Proteomics : McP. 6: 2200-11. PMID 17921176 DOI: 10.1074/Mcp.M700274-Mcp200 |
0.391 |
|
| 2007 |
Sennels L, Salek M, Lomas L, Boschetti E, Righetti PG, Rappsilber J. Proteomic analysis of human blood serum using peptide library beads. Journal of Proteome Research. 6: 4055-62. PMID 17877382 DOI: 10.1021/Pr070339L |
0.35 |
|
| 2007 |
Agger K, Cloos PA, Christensen J, Pasini D, Rose S, Rappsilber J, Issaeva I, Canaani E, Salcini AE, Helin K. UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development. Nature. 449: 731-4. PMID 17713478 DOI: 10.1038/Nature06145 |
0.374 |
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| 2007 |
Dietrich N, Bracken AP, Trinh E, Schjerling CK, Koseki H, Rappsilber J, Helin K, Hansen KH. Bypass of senescence by the polycomb group protein CBX8 through direct binding to the INK4A-ARF locus. The Embo Journal. 26: 1637-48. PMID 17332741 DOI: 10.1038/Sj.Emboj.7601632 |
0.4 |
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| 2007 |
Christensen J, Agger K, Cloos PA, Pasini D, Rose S, Sennels L, Rappsilber J, Hansen KH, Salcini AE, Helin K. RBP2 belongs to a family of demethylases, specific for tri-and dimethylated lysine 4 on histone 3. Cell. 128: 1063-76. PMID 17320161 DOI: 10.1016/J.Cell.2007.02.003 |
0.325 |
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| 2006 |
Cloos PA, Christensen J, Agger K, Maiolica A, Rappsilber J, Antal T, Hansen KH, Helin K. The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3. Nature. 442: 307-11. PMID 16732293 DOI: 10.1038/Nature04837 |
0.351 |
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| 2006 |
Ishihama Y, Rappsilber J, Mann M. Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics. Journal of Proteome Research. 5: 988-94. PMID 16602707 DOI: 10.1021/Pr050385Q |
0.346 |
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| 2006 |
Carissimi C, Saieva L, Baccon J, Chiarella P, Maiolica A, Sawyer A, Rappsilber J, Pellizzoni L. Gemin8 is a novel component of the survival motor neuron complex and functions in small nuclear ribonucleoprotein assembly. The Journal of Biological Chemistry. 281: 8126-34. PMID 16434402 DOI: 10.1074/Jbc.M512243200 |
0.424 |
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| 2005 |
Cecconi D, Donadelli M, Scarpa A, Milli A, Palmieri M, Hamdan M, Areces LB, Rappsilber J, Righetti PG. Proteomic analysis of pancreatic ductal carcinoma cells after combined treatment with gemcitabine and trichostatin A. Journal of Proteome Research. 4: 1909-16. PMID 16335935 DOI: 10.1021/Pr050154J |
0.309 |
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| 2005 |
Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, Rappsilber J, Mann M. Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Molecular & Cellular Proteomics : McP. 4: 1265-72. PMID 15958392 DOI: 10.1074/Mcp.M500061-Mcp200 |
0.382 |
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| 2005 |
Campostrini N, Areces LB, Rappsilber J, Pietrogrande MC, Dondi F, Pastorino F, Ponzoni M, Righetti PG. Spot overlapping in two-dimensional maps: a serious problem ignored for much too long. Proteomics. 5: 2385-95. PMID 15880804 DOI: 10.1002/Pmic.200401253 |
0.331 |
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| 2005 |
Carissimi C, Baccon J, Straccia M, Chiarella P, Maiolica A, Sawyer A, Rappsilber J, Pellizzoni L. Unrip is a component of SMN complexes active in snRNP assembly. Febs Letters. 579: 2348-54. PMID 15848170 DOI: 10.1016/J.Febslet.2005.03.034 |
0.4 |
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| 2005 |
Salek M, Di Bartolo V, Cittaro D, Borsotti D, Wei J, Acuto O, Rappsilber J, Lehmann WD. Sequence tag scanning: a new explorative strategy for recognition of unexpected protein alterations by nanoelectrospray ionization-tandem mass spectrometry. Proteomics. 5: 667-74. PMID 15714472 DOI: 10.1002/Pmic.200401152 |
0.369 |
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| 2004 |
Chan CC, Dostie J, Diem MD, Feng W, Mann M, Rappsilber J, Dreyfuss G. eIF4A3 is a novel component of the exon junction complex. Rna (New York, N.Y.). 10: 200-9. PMID 14730019 DOI: 10.1261/Rna.5230104 |
0.359 |
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| 2003 |
Rappsilber J, Moniatte M, Nielsen ML, Podtelejnikov AV, Mann M. Experiences and perspectives of MALDI MS and MS/MS in proteomic research International Journal of Mass Spectrometry. 226: 223-237. DOI: 10.1016/S1387-3806(02)00976-4 |
0.308 |
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| 2002 |
Andersen JS, Rappsilber J, Steen H, Pandey A, Molina H, Lund M, Podtelejnikov A, Lamond AI, Mann M. Multi-Protein Complexes Studied by Mass Spectrometry. Thescientificworldjournal. 2: 91-92. PMID 29973817 DOI: 10.1100/Tsw.2002.43 |
0.408 |
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| 2002 |
Rappsilber J, Mann M. Is mass spectrometry ready for proteome-wide protein expression analysis? Genome Biology. 3: COMMENT2008. PMID 12186637 DOI: 10.1186/Gb-2002-3-8-Comment2008 |
0.343 |
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| 2002 |
Rappsilber J, Ryder U, Lamond AI, Mann M. Large-scale proteomic analysis of the human spliceosome. Genome Research. 12: 1231-45. PMID 12176931 DOI: 10.1101/Gr.473902 |
0.405 |
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| 2002 |
Baccon J, Pellizzoni L, Rappsilber J, Mann M, Dreyfuss G. Identification and characterization of Gemin7, a novel component of the survival of motor neuron complex. The Journal of Biological Chemistry. 277: 31957-62. PMID 12065586 DOI: 10.1074/Jbc.M203478200 |
0.386 |
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| 2002 |
Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L, Rappsilber J, Mann M, Dreyfuss G. miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes & Development. 16: 720-8. PMID 11914277 DOI: 10.1101/Gad.974702 |
0.32 |
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| 2002 |
Rappsilber J, Mann M. What does it mean to identify a protein in proteomics? Trends in Biochemical Sciences. 27: 74-8. PMID 11852244 DOI: 10.1016/S0968-0004(01)02021-7 |
0.378 |
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| 2002 |
Friesen WJ, Wyce A, Paushkin S, Abel L, Rappsilber J, Mann M, Dreyfuss G. A novel WD repeat protein component of the methylosome binds Sm proteins. The Journal of Biological Chemistry. 277: 8243-7. PMID 11756452 DOI: 10.1074/Jbc.M109984200 |
0.421 |
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| 2002 |
Pellizzoni L, Baccon J, Rappsilber J, Mann M, Dreyfuss G. Purification of native survival of motor neurons complexes and identification of Gemin6 as a novel component. The Journal of Biological Chemistry. 277: 7540-5. PMID 11748230 DOI: 10.1074/Jbc.M110141200 |
0.379 |
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| 2002 |
Gubitz AK, Mourelatos Z, Abel L, Rappsilber J, Mann M, Dreyfuss G. Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins. The Journal of Biological Chemistry. 277: 5631-6. PMID 11714716 DOI: 10.1074/Jbc.M109448200 |
0.42 |
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| 2002 |
Cramer P, Rappsilber J, Mann M, Kroll W, Schultz C. Biochemie und Molekulargenetik 2001 Nachrichten Aus Der Chemie. 50: 312-326. DOI: 10.1002/Nadc.20020500309 |
0.319 |
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| 2001 |
Chen J, Rappsilber J, Chiang YC, Russell P, Mann M, Denis CL. Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex. Journal of Molecular Biology. 314: 683-94. PMID 11733989 DOI: 10.1006/Jmbi.2001.5162 |
0.42 |
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| 2001 |
Friesen WJ, Paushkin S, Wyce A, Massenet S, Pesiridis GS, Van Duyne G, Rappsilber J, Mann M, Dreyfuss G. The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins. Molecular and Cellular Biology. 21: 8289-300. PMID 11713266 DOI: 10.1128/Mcb.21.24.8289-8300.2001 |
0.412 |
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| 2001 |
Luo ML, Zhou Z, Magni K, Christoforides C, Rappsilber J, Mann M, Reed R. Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly. Nature. 413: 644-7. PMID 11675789 DOI: 10.1038/35098106 |
0.309 |
|
| 2001 |
Rappsilber J, Ajuh P, Lamond AI, Mann M. SPF30 is an Essential Human Splicing Factor Required for Assembly of the U4/U5/U6 Tri-small Nuclear Ribonucleoprotein into the Spliceosome Journal of Biological Chemistry. 276: 31142-31150. PMID 11331295 DOI: 10.1074/Jbc.M103620200 |
0.345 |
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| 2001 |
Pellizzoni L, Charroux B, Rappsilber J, Mann M, Dreyfuss G. A functional interaction between the survival motor neuron complex and RNA polymerase II. The Journal of Cell Biology. 152: 75-85. PMID 11149922 DOI: 10.1083/Jcb.152.1.75 |
0.355 |
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| 2000 |
Rappsilber J, Siniossoglou S, Hurt EC, Mann M. A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry. Analytical Chemistry. 72: 267-75. PMID 10658319 DOI: 10.1021/Ac991081O |
0.395 |
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| 2000 |
Wallon G, Rappsilber J, Mann M, Serrano L. Model for stathmin/OP18 binding to tubulin Embo Journal. 19: 213-222. PMID 10637225 DOI: 10.1093/Emboj/19.2.213 |
0.319 |
|
| 1998 |
Siniossoglou S, Santos-Rosa H, Rappsilber J, Mann M, Hurt E. A novel complex of membrane proteins required for formation of a spherical nucleus Embo Journal. 17: 6449-6464. PMID 9822591 DOI: 10.1093/Emboj/17.22.6449 |
0.363 |
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| 1998 |
Neubauer G, King A, Rappsilber J, Calvio C, Watson M, Ajuh P, Sleeman J, Lamond A, Mann M. Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex Nature Genetics. 20: 46-50. PMID 9731529 DOI: 10.1038/1700 |
0.419 |
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| 1998 |
Liu HY, Badarinarayana V, Audino DC, Rappsilber J, Mann M, Denis CL. The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively Embo Journal. 17: 1096-1106. PMID 9463387 DOI: 10.1093/Emboj/17.4.1096 |
0.386 |
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