Year |
Citation |
Score |
2014 |
Demchak B, Hull T, Reich M, Liefeld T, Smoot M, Ideker T, Mesirov JP. Cytoscape: the network visualization tool for GenomeSpace workflows. F1000research. 3: 151. PMID 25165537 DOI: 10.12688/F1000Research.4492.2 |
0.422 |
|
2012 |
Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T. A travel guide to Cytoscape plugins. Nature Methods. 9: 1069-76. PMID 23132118 DOI: 10.1038/Nmeth.2212 |
0.358 |
|
2011 |
Srivas R, Hannum G, Ruscheinski J, Ono K, Wang PL, Smoot M, Ideker T. Assembling global maps of cellular function through integrative analysis of physical and genetic networks. Nature Protocols. 6: 1308-23. PMID 21886098 DOI: 10.1038/Nprot.2011.368 |
0.359 |
|
2011 |
Smoot M, Ono K, Ideker T, Maere S. PiNGO: a Cytoscape plugin to find candidate genes in biological networks. Bioinformatics (Oxford, England). 27: 1030-1. PMID 21278188 DOI: 10.1093/Bioinformatics/Btr045 |
0.304 |
|
2011 |
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (Oxford, England). 27: 431-2. PMID 21149340 DOI: 10.1093/Bioinformatics/Btq675 |
0.363 |
|
2010 |
Bandyopadhyay S, Chiang CY, Srivastava J, Gersten M, White S, Bell R, Kurschner C, Martin C, Smoot M, Sahasrabudhe S, Barber DL, Chanda SK, Ideker T. A human MAP kinase interactome. Nature Methods. 7: 801-5. PMID 20936779 DOI: 10.1038/Nmeth.1506 |
0.324 |
|
2010 |
Sierk ML, Smoot ME, Bass EJ, Pearson WR. Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments. Bmc Bioinformatics. 11: 146. PMID 20307279 DOI: 10.1186/1471-2105-11-146 |
0.485 |
|
2009 |
Bradley RK, Roberts A, Smoot M, Juvekar S, Do J, Dewey C, Holmes I, Pachter L. Fast statistical alignment. Plos Computational Biology. 5: e1000392. PMID 19478997 DOI: 10.1371/Journal.Pcbi.1000392 |
0.397 |
|
2008 |
Yeung N, Cline MS, Kuchinsky A, Smoot ME, Bader GD. Exploring biological networks with Cytoscape software. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.13. PMID 18819078 DOI: 10.1002/0471250953.Bi0813S23 |
0.359 |
|
2008 |
Kalaev M, Smoot M, Ideker T, Sharan R. NetworkBLAST: comparative analysis of protein networks. Bioinformatics (Oxford, England). 24: 594-6. PMID 18174180 DOI: 10.1093/Bioinformatics/Btm630 |
0.32 |
|
2007 |
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, et al. Integration of biological networks and gene expression data using Cytoscape. Nature Protocols. 2: 2366-82. PMID 17947979 DOI: 10.1038/Nprot.2007.324 |
0.352 |
|
2005 |
Smoot ME, Bass EJ, Guerlain SA, Pearson WR. A System for Visualizing and Analyzing Near-Optimal Protein Sequence Alignments Information Visualization. 4: 224-237. DOI: 10.1057/Palgrave.Ivs.9500100 |
0.558 |
|
2004 |
Smoot ME, Guerlain SA, Pearson WR. Visualization of near-optimal sequence alignments. Bioinformatics (Oxford, England). 20: 953-8. PMID 14751975 DOI: 10.1093/Bioinformatics/Bth013 |
0.543 |
|
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