| Year |
Citation |
Score |
| 2020 |
Liu Y, Trnka MJ, Guan S, Kwon D, Kim DH, Chen JJ, Greer PA, Burlingame AL, Correia MA. A Novel Mechanism For NF-κB Activation Via IκB Aggregation: Implications For Hepatic Mallory-Denk-Body Induced Inflammation. Molecular & Cellular Proteomics : McP. PMID 32912968 DOI: 10.1074/Mcp.Ra120.002316 |
0.316 |
|
| 2020 |
von Appen A, LaJoie D, Johnson IE, Trnka MJ, Pick SM, Burlingame AL, Ullman KS, Frost A. LEM2 phase separation promotes ESCRT-mediated nuclear envelope reformation. Nature. 582: 115-118. PMID 32494070 DOI: 10.1038/S41586-020-2232-X |
0.37 |
|
| 2019 |
Sanulli S, Trnka MJ, Dharmarajan V, Tibble RW, Pascal BD, Burlingame AL, Griffin PR, Gross JD, Narlikar GJ. HP1 reshapes nucleosome core to promote heterochromatin phase separation. Nature. PMID 31618757 DOI: 10.1038/S41586-019-1669-2 |
0.333 |
|
| 2019 |
Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, ... ... Trnka MJ, et al. The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. Analytical Chemistry. PMID 31045356 DOI: 10.1021/Acs.Analchem.9B00658 |
0.311 |
|
| 2019 |
Trnka M, Pellarin R, Robinson P. Role of Integrative Structural Biology in Understanding Transcriptional Initiation. Methods (San Diego, Calif.). PMID 30890443 DOI: 10.1016/J.Ymeth.2019.03.009 |
0.304 |
|
| 2019 |
Longbotham JE, Chio CM, Dharmarajan V, Trnka MJ, Torres IO, Goswami D, Ruiz K, Burlingame AL, Griffin PR, Fujimori DG. Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling. Nature Communications. 10: 94. PMID 30626866 DOI: 10.1038/S41467-018-07829-Z |
0.351 |
|
| 2018 |
Gamarra N, Johnson SL, Trnka MJ, Burlingame AL, Narlikar GJ. The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h. Elife. 7. PMID 29664398 DOI: 10.7554/Elife.35322 |
0.318 |
|
| 2017 |
Larson AG, Elnatan D, Keenen MM, Trnka MJ, Johnston JB, Burlingame AL, Agard DA, Redding S, Narlikar GJ. Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin. Nature. PMID 28636604 DOI: 10.1038/Nature22822 |
0.359 |
|
| 2017 |
Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ. Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones. Cell Reports. 19: 2033-2044. PMID 28591576 DOI: 10.1016/J.Celrep.2017.05.029 |
0.389 |
|
| 2016 |
Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD. Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex. Cell. 166: 1411-1422.e16. PMID 27610567 DOI: 10.1016/J.Cell.2016.08.050 |
0.376 |
|
| 2015 |
Roh SH, Kasembeli M, Galaz-Montoya JG, Trnka M, Lau WC, Burlingame A, Chiu W, Tweardy DJ. Chaperonin TRiC/CCT Modulates the Folding and Activity of Leukemogenic Fusion Oncoprotein AML1-ETO. The Journal of Biological Chemistry. PMID 26706127 DOI: 10.1074/Jbc.M115.684878 |
0.305 |
|
| 2015 |
Robinson PJ, Trnka MJ, Pellarin R, Greenberg CH, Bushnell DA, Davis R, Burlingame AL, Sali A, Kornberg RD. Molecular architecture of the yeast Mediator complex. Elife. 4. PMID 26402457 DOI: 10.7554/Elife.08719 |
0.336 |
|
| 2015 |
Lu J, Trnka MJ, Roh SH, Robinson PJ, Shiau C, Fujimori DG, Chiu W, Burlingame AL, Guan S. Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes. Journal of the American Society For Mass Spectrometry. PMID 26323614 DOI: 10.1007/S13361-015-1235-6 |
0.31 |
|
| 2015 |
Guan S, Trnka MJ, Bushnell DA, Robinson PJ, Gestwicki JE, Burlingame AL. Deconvolution method for specific and nonspecific binding of ligand to multiprotein complex by native mass spectrometry. Analytical Chemistry. 87: 8541-6. PMID 26189511 DOI: 10.1021/Acs.Analchem.5B02258 |
0.323 |
|
| 2015 |
Wang Y, Kim SM, Trnka MJ, Liu Y, Burlingame AL, Correia MA. Human liver cytochrome P450 3A4 ubiquitination: molecular recognition by UBC7-gp78 autocrine motility factor receptor and UbcH5a-CHIP-Hsc70-Hsp40 E2-E3 ubiquitin ligase complexes. The Journal of Biological Chemistry. 290: 3308-32. PMID 25451919 DOI: 10.1074/Jbc.M114.611525 |
0.338 |
|
| 2014 |
Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ. Matching cross-linked peptide spectra: only as good as the worse identification. Molecular & Cellular Proteomics : McP. 13: 420-34. PMID 24335475 DOI: 10.1074/Mcp.M113.034009 |
0.31 |
|
| 2013 |
Shiau C, Trnka MJ, Bozicevic A, Ortiz Torres I, Al-Sady B, Burlingame AL, Narlikar GJ, Fujimori DG. Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase. Chemistry & Biology. 20: 494-9. PMID 23601638 DOI: 10.1016/J.Chembiol.2013.03.008 |
0.339 |
|
| 2012 |
Robinson PJ, Bushnell DA, Trnka MJ, Burlingame AL, Kornberg RD. Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II. Proceedings of the National Academy of Sciences of the United States of America. 109: 17931-5. PMID 23071300 DOI: 10.1073/Pnas.1215241109 |
0.337 |
|
| 2011 |
Sterling HJ, Cassou CA, Trnka MJ, Burlingame AL, Krantz BA, Williams ER. The role of conformational flexibility on protein supercharging in native electrospray ionization. Physical Chemistry Chemical Physics : Pccp. 13: 18288-96. PMID 21399817 DOI: 10.1039/C1Cp20277D |
0.303 |
|
| 2010 |
Trnka MJ, Burlingame AL. Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites. Molecular & Cellular Proteomics : McP. 9: 2306-17. PMID 20813910 DOI: 10.1074/Mcp.M110.003764 |
0.403 |
|
| 2009 |
Jiang Y, Trnka MJ, Medzihradszky KF, Ouellet H, Wang Y, Ortiz de Montellano PR. Covalent heme attachment to the protein in human heme oxygenase-1 with selenocysteine replacing the His25 proximal iron ligand. Journal of Inorganic Biochemistry. 103: 316-25. PMID 19135260 DOI: 10.1016/J.Jinorgbio.2008.11.002 |
0.322 |
|
| 2008 |
Lampe JN, Floor SN, Gross JD, Nishida CR, Jiang Y, Trnka MJ, Ortiz de Montellano PR. Ligand-induced conformational heterogeneity of cytochrome P450 CYP119 identified by 2D NMR spectroscopy with the unnatural amino acid (13)C-p-methoxyphenylalanine. Journal of the American Chemical Society. 130: 16168-9. PMID 18998650 DOI: 10.1021/Ja8071463 |
0.352 |
|
| 2006 |
Trnka MJ, Doneanu CE, Trager WF. Photoaffinity labeling of P450Cam by an imidazole-tethered benzophenone probe. Archives of Biochemistry and Biophysics. 445: 95-107. PMID 16321358 DOI: 10.1016/J.Abb.2005.10.014 |
0.492 |
|
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