| Year |
Citation |
Score |
| 2024 |
Parey E, Ortega-Martinez O, Delroisse J, Piovani L, Czarkwiani A, Dylus D, Arya S, Dupont S, Thorndyke M, Larsson T, Johannesson K, Buckley KM, Martinez P, Oliveri P, Marlétaz F. The brittle star genome illuminates the genetic basis of animal appendage regeneration. Nature Ecology & Evolution. PMID 39030276 DOI: 10.1038/s41559-024-02456-y |
0.574 |
|
| 2023 |
Marlétaz F, Couloux A, Poulain J, Labadie K, Da Silva C, Mangenot S, Noel B, Poustka AJ, Dru P, Pegueroles C, Borra M, Lowe EK, Lhomond G, Besnardeau L, Le Gras S, ... ... Oliveri P, et al. Analysis of the sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes. Cell Genomics. 3: 100295. PMID 37082140 DOI: 10.1016/j.xgen.2023.100295 |
0.637 |
|
| 2022 |
Czarkwiani A, Taylor J, Oliveri P. Neurogenesis during Brittle Star Arm Regeneration Is Characterised by a Conserved Set of Key Developmental Genes. Biology. 11. PMID 36138839 DOI: 10.3390/biology11091360 |
0.317 |
|
| 2021 |
Carter HF, Thompson JR, Elphick MR, Oliveri P. The development and neuronal complexity of bipinnaria larvae of the sea star Asterias rubens. Integrative and Comparative Biology. PMID 34048552 DOI: 10.1093/icb/icab103 |
0.579 |
|
| 2021 |
Czarkwiani A, Dylus DV, Carballo L, Oliveri P. FGF signalling plays similar roles in development and regeneration of the skeleton in the brittle star Amphiura filiformis. Development (Cambridge, England). 148. PMID 34042967 DOI: 10.1242/dev.180760 |
0.339 |
|
| 2020 |
Arnone MI, Oliveri P. Unravelling the evolutionary history of kisspeptin. Elife. 9. PMID 32538354 DOI: 10.7554/Elife.58599 |
0.316 |
|
| 2020 |
Ferrario C, Czarkwiani A, Dylus DV, Piovani L, Candia Carnevali MD, Sugni M, Oliveri P. Extracellular matrix gene expression during arm regeneration in Amphiura filiformis. Cell and Tissue Research. PMID 32350640 DOI: 10.1007/S00441-020-03201-0 |
0.456 |
|
| 2018 |
Arnone MI, Oliveri P, Martinez P. A conceptual history of the "regulatory genome": From Theodor Boveri to Eric Davidson. Marine Genomics. PMID 30501998 DOI: 10.1016/J.Margen.2018.11.003 |
0.635 |
|
| 2018 |
Perillo M, Paganos P, Mattiello T, Cocurullo M, Oliveri P, Arnone MI. New Neuronal Subtypes With a "Pre-Pancreatic" Signature in the Sea Urchin . Frontiers in Endocrinology. 9: 650. PMID 30450080 DOI: 10.3389/Fendo.2018.00650 |
0.325 |
|
| 2018 |
Wood NJ, Mattiello T, Rowe ML, Ward L, Perillo M, Arnone MI, Elphick MR, Oliveri P. Neuropeptidergic Systems in Pluteus Larvae of the Sea Urchin : Neurochemical Complexity in a "Simple" Nervous System. Frontiers in Endocrinology. 9: 628. PMID 30410468 DOI: 10.3389/Fendo.2018.00628 |
0.658 |
|
| 2018 |
Ben Khadra Y, Sugni M, Ferrario C, Bonasoro F, Oliveri P, Martinez P, Candia Carnevali MD. Regeneration in Stellate Echinoderms: Crinoidea, Asteroidea and Ophiuroidea. Results and Problems in Cell Differentiation. 65: 285-320. PMID 30083925 DOI: 10.1007/978-3-319-92486-1_14 |
0.543 |
|
| 2018 |
Dylus DV, Czarkwiani A, Blowes LM, Elphick MR, Oliveri P. Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution. Genome Biology. 19: 26. PMID 29490679 DOI: 10.1186/S13059-018-1402-8 |
0.682 |
|
| 2018 |
Ferrario C, Ben Khadra Y, Czarkwiani A, Zakrzewski A, Martinez P, Colombo G, Bonasoro F, Candia Carnevali MD, Oliveri P, Sugni M. Fundamental aspects of arm repair phase in two echinoderm models. Developmental Biology. 433: 297-309. PMID 29291979 DOI: 10.1016/J.Ydbio.2017.09.035 |
0.487 |
|
| 2018 |
Ballarin L, Rinkevich B, Bartscherer K, Burzynski A, Cambier S, Cammarata M, Domart-Coulon I, Drobne D, Encinas J, Frank U, Geneviere A, Hobmayer B, Löhelaid H, Lyons D, Martinez P, ... Oliveri P, et al. Maristem—Stem Cells of Marine/Aquatic Invertebrates: From Basic Research to Innovative Applications Sustainability. 10: 526. DOI: 10.3390/Su10020526 |
0.472 |
|
| 2016 |
Czarkwiani A, Ferrario C, Dylus DV, Sugni M, Oliveri P. Skeletal regeneration in the brittle star Amphiura filiformis. Frontiers in Zoology. 13: 18. PMID 27110269 DOI: 10.1186/S12983-016-0149-X |
0.333 |
|
| 2016 |
Dylus DV, Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P. Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks. Evodevo. 7: 2. PMID 26759711 DOI: 10.1186/S13227-015-0039-X |
0.511 |
|
| 2016 |
Valero-Gracia A, Petrone L, Oliveri P, Nilsson D, Arnone MI. Non-directional Photoreceptors in the Pluteus of Strongylocentrotus purpuratus Frontiers in Ecology and Evolution. 4. DOI: 10.3389/Fevo.2016.00127 |
0.348 |
|
| 2015 |
Pauls S, Goode DK, Petrone L, Oliveri P, Elgar G. Evolution of lineage-specific functions in ancient cis-regulatory modules. Open Biology. 5. PMID 26538567 DOI: 10.1098/Rsob.150079 |
0.434 |
|
| 2015 |
Semmens DC, Beets I, Rowe ML, Blowes LM, Oliveri P, Elphick MR. Discovery of sea urchin NGFFFamide receptor unites a bilaterian neuropeptide family. Open Biology. 5: 150030. PMID 25904544 DOI: 10.1098/Rsob.150030 |
0.581 |
|
| 2015 |
Saina M, Busengdal H, Sinigaglia C, Petrone L, Oliveri P, Rentzsch F, Benton R. A cnidarian homologue of an insect gustatory receptor functions in developmental body patterning. Nature Communications. 6: 6243. PMID 25692633 DOI: 10.1038/Ncomms7243 |
0.417 |
|
| 2015 |
Love NR, Pollak N, Dölle C, Niere M, Chen Y, Oliveri P, Amaya E, Patel S, Ziegler M. NAD kinase controls animal NADP biosynthesis and is modulated via evolutionarily divergent calmodulin-dependent mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 112: 1386-91. PMID 25605906 DOI: 10.1073/Pnas.1417290112 |
0.348 |
|
| 2015 |
Sinigaglia C, Busengdal H, Lerner A, Oliveri P, Rentzsch F. Molecular characterization of the apical organ of the anthozoan Nematostella vectensis. Developmental Biology. 398: 120-33. PMID 25478911 DOI: 10.1016/J.Ydbio.2014.11.019 |
0.453 |
|
| 2014 |
Telford MJ, Lowe CJ, Cameron CB, Ortega-Martinez O, Aronowicz J, Oliveri P, Copley RR. Phylogenomic analysis of echinoderm class relationships supports Asterozoa. Proceedings. Biological Sciences / the Royal Society. 281. PMID 24850925 DOI: 10.1098/Rspb.2014.0479 |
0.333 |
|
| 2014 |
Oliveri P, Fortunato AE, Petrone L, Ishikawa-Fujiwara T, Kobayashi Y, Todo T, Antonova O, Arboleda E, Zantke J, Tessmar-Raible K, Falciatore A. The Cryptochrome/Photolyase Family in aquatic organisms. Marine Genomics. 14: 23-37. PMID 24568948 DOI: 10.1016/J.Margen.2014.02.001 |
0.408 |
|
| 2013 |
Andrikou C, Iovene E, Rizzo F, Oliveri P, Arnone MI. Myogenesis in the sea urchin embryo: the molecular fingerprint of the myoblast precursors. Evodevo. 4: 33. PMID 24295205 DOI: 10.1186/2041-9139-4-33 |
0.454 |
|
| 2013 |
Czarkwiani A, Dylus DV, Oliveri P. Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis. Gene Expression Patterns : Gep. 13: 464-72. PMID 24051028 DOI: 10.1016/J.Gep.2013.09.002 |
0.425 |
|
| 2013 |
Solek CM, Oliveri P, Loza-Coll M, Schrankel CS, Ho EC, Wang G, Rast JP. An ancient role for Gata-1/2/3 and Scl transcription factor homologs in the development of immunocytes. Developmental Biology. 382: 280-92. PMID 23792116 DOI: 10.1016/J.Ydbio.2013.06.019 |
0.438 |
|
| 2009 |
Wahl ME, Hahn J, Gora K, Davidson EH, Oliveri P. The cis-regulatory system of the tbrain gene: Alternative use of multiple modules to promote skeletogenic expression in the sea urchin embryo. Developmental Biology. 335: 428-41. PMID 19679118 DOI: 10.1016/J.Ydbio.2009.08.005 |
0.614 |
|
| 2008 |
Materna SC, Oliveri P. A protocol for unraveling gene regulatory networks. Nature Protocols. 3: 1876-87. PMID 19008874 DOI: 10.1038/Nprot.2008.187 |
0.773 |
|
| 2008 |
Oliveri P, Tu Q, Davidson EH. Global regulatory logic for specification of an embryonic cell lineage. Proceedings of the National Academy of Sciences of the United States of America. 105: 5955-62. PMID 18413610 DOI: 10.1073/Pnas.0711220105 |
0.67 |
|
| 2008 |
Geiss GK, Bumgarner RE, Birditt B, Dahl T, Dowidar N, Dunaway DL, Fell HP, Ferree S, George RD, Grogan T, James JJ, Maysuria M, Mitton JD, Oliveri P, Osborn JL, et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nature Biotechnology. 26: 317-25. PMID 18278033 DOI: 10.1038/Nbt1385 |
0.577 |
|
| 2008 |
Voronina E, Lopez M, Juliano CE, Gustafson E, Song JL, Extavour C, George S, Oliveri P, McClay D, Wessel G. Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development. Developmental Biology. 314: 276-86. PMID 18191830 DOI: 10.1016/J.Ydbio.2007.11.039 |
0.362 |
|
| 2008 |
Geiss GK, Bumgarner RE, Birditt B, Dahl T, Dowidar N, Dunaway DL, Fell HP, Ferree S, George RD, Grogan T, James JJ, Maysuria M, Mitton JD, Oliveri P, Osborn JL, et al. Corrigendum: Direct multiplexed measurement of gene expression with color-coded probe pairs (Nature Biotechnology (2008) 26, (317-325)) Nature Biotechnology. 26: 709. DOI: 10.1038/Nbt0608-709C |
0.455 |
|
| 2007 |
Revilla-i-Domingo R, Oliveri P, Davidson EH. A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres. Proceedings of the National Academy of Sciences of the United States of America. 104: 12383-8. PMID 17636127 DOI: 10.1073/Pnas.0705324104 |
0.781 |
|
| 2007 |
Oliveri P, Davidson EH. Development. Built to run, not fail. Science (New York, N.Y.). 315: 1510-1. PMID 17363653 DOI: 10.1126/Science.1140979 |
0.563 |
|
| 2006 |
Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH. High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution. Developmental Biology. 300: 27-34. PMID 17101125 DOI: 10.1016/J.Ydbio.2006.10.016 |
0.806 |
|
| 2006 |
Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Oliveri P, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609 |
0.654 |
|
| 2006 |
Tu Q, Brown CT, Davidson EH, Oliveri P. Sea urchin Forkhead gene family: phylogeny and embryonic expression. Developmental Biology. 300: 49-62. PMID 17081512 DOI: 10.1016/J.Ydbio.2006.09.031 |
0.674 |
|
| 2006 |
Oliveri P, Walton KD, Davidson EH, McClay DR. Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo. Development (Cambridge, England). 133: 4173-81. PMID 17038513 DOI: 10.1242/Dev.02577 |
0.647 |
|
| 2006 |
Dornbos SQ, Bottjer DJ, Chen JY, Gao F, Oliveri P, Li CW. Environmental controls on the taphonomy of phosphatized animals and animal embryos from the Neoproterozoic Doushantuo Formation, Southwest China Palaios. 21: 3-14. DOI: 10.2110/Palo.2004.P04-37 |
0.317 |
|
| 2004 |
Oliveri P, Davidson EH. Gene regulatory network analysis in sea urchin embryos. Methods in Cell Biology. 74: 775-94. PMID 15575631 DOI: 10.1016/S0091-679X(04)74032-7 |
0.647 |
|
| 2004 |
Oliveri P, Davidson EH. Gene regulatory network controlling embryonic specification in the sea urchin. Current Opinion in Genetics & Development. 14: 351-60. PMID 15261650 DOI: 10.1016/J.Gde.2004.06.004 |
0.603 |
|
| 2004 |
Chen JY, Bottjer DJ, Oliveri P, Dornbos SQ, Gao F, Ruffins S, Chi H, Li CW, Davidson EH. Small bilaterian fossils from 40 to 55 million years before the cambrian. Science (New York, N.Y.). 305: 218-22. PMID 15178752 DOI: 10.1126/Science.1099213 |
0.476 |
|
| 2004 |
Cameron RA, Oliveri P, Wyllie J, Davidson EH. cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin. Gene Expression Patterns : Gep. 4: 205-13. PMID 15161101 DOI: 10.1016/J.Modgep.2003.08.007 |
0.582 |
|
| 2004 |
Takacs CM, Amore G, Oliveri P, Poustka AJ, Wang D, Burke RD, Peterson KJ. Expression of an NK2 homeodomain gene in the apical ectoderm defines a new territory in the early sea urchin embryo. Developmental Biology. 269: 152-64. PMID 15081364 DOI: 10.1016/J.Ydbio.2004.01.023 |
0.638 |
|
| 2003 |
Oliveri P, Davidson EH, McClay DR. Activation of pmar1 controls specification of micromeres in the sea urchin embryo. Developmental Biology. 258: 32-43. PMID 12781680 DOI: 10.1016/S0012-1606(03)00108-8 |
0.564 |
|
| 2003 |
Ettensohn CA, Illies MR, Oliveri P, De Jong DL. Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo. Development (Cambridge, England). 130: 2917-28. PMID 12756175 DOI: 10.1242/Dev.00511 |
0.457 |
|
| 2002 |
Dmochowski IJ, Dmochowski JE, Oliveri P, Davidson EH, Fraser SE. Quantitative imaging of cis-regulatory reporters in living embryos. Proceedings of the National Academy of Sciences of the United States of America. 99: 12895-900. PMID 12237411 DOI: 10.1073/Pnas.202483199 |
0.506 |
|
| 2002 |
Chen JY, Oliveri P, Gao F, Dornbos SQ, Li CW, Bottjer DJ, Davidson EH. Precambrian animal life: probable developmental and adult cnidarian forms from Southwest China. Developmental Biology. 248: 182-96. PMID 12142030 DOI: 10.1006/Dbio.2002.0714 |
0.504 |
|
| 2002 |
Oliveri P, Carrick DM, Davidson EH. A regulatory gene network that directs micromere specification in the sea urchin embryo. Developmental Biology. 246: 209-28. PMID 12027443 DOI: 10.1006/Dbio.2002.0627 |
0.65 |
|
| 2002 |
Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, et al. A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Developmental Biology. 246: 162-90. PMID 12027441 DOI: 10.1006/Dbio.2002.0635 |
0.766 |
|
| 2002 |
Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, et al. A genomic regulatory network for development. Science (New York, N.Y.). 295: 1669-78. PMID 11872831 DOI: 10.1126/Science.1069883 |
0.765 |
|
| 2000 |
Di Bernardo M, Bellomonte D, Castagnetti S, Melfi R, Oliveri P, Spinelli G. Homeobox genes and sea urchin development. The International Journal of Developmental Biology. 44: 637-43. PMID 11061427 DOI: 10.1387/Ijdb.11061427 |
0.478 |
|
| 2000 |
Chen JY, Oliveri P, Li CW, Zhou GQ, Gao F, Hagadorn JW, Peterson KJ, Davidson EH. Precambrian animal diversity: putative phosphatized embryos from the Doushantuo Formation of China. Proceedings of the National Academy of Sciences of the United States of America. 97: 4457-62. PMID 10781044 DOI: 10.1073/Pnas.97.9.4457 |
0.656 |
|
| 1999 |
Di Bernardo M, Castagnetti S, Bellomonte D, Oliveri P, Melfi R, Palla F, Spinelli G. Spatially restricted expression of PlOtp, a Paracentrotus lividus orthopedia-related homeobox gene, is correlated with oral ectodermal patterning and skeletal morphogenesis in late-cleavage sea urchin embryos. Development (Cambridge, England). 126: 2171-9. PMID 10207142 |
0.345 |
|
| 1997 |
Spinelli G, Di Bernardo M, Palla F, Anello L, Oliveri P, Melfi R, Bonura C, Russo R, Di Gaetano L. Gene expression during early embryogenesis of sea urchin: The histone and homeobox genes Invertebrate Reproduction and Development. 31: 11-19. DOI: 10.1080/07924259.1997.9672558 |
0.451 |
|
| 1995 |
Di Bernardo M, Russo R, Oliveri P, Melfi R, Spinelli G. Homeobox-containing gene transiently expressed in a spatially restricted pattern in the early sea urchin embryo. Proceedings of the National Academy of Sciences of the United States of America. 92: 8180-4. PMID 7667265 DOI: 10.1073/Pnas.92.18.8180 |
0.467 |
|
| 1994 |
Di Bernardo M, Russo R, Oliveri P, Melfi R, Spinelli G. Expression of homeobox-containing genes in the sea urchin (Parancentrotus lividus) embryo. Genetica. 94: 141-50. PMID 7896135 DOI: 10.1007/Bf01443428 |
0.515 |
|
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