| Year |
Citation |
Score |
| 2019 |
Scarborough MJ, Myers KS, Donohue TJ, Noguera DR. Medium-chain fatty acid synthesis by Weimeria bifida, gen. nov., sp. nov., and Pseudoramibacter fermentans, sp. nov. Applied and Environmental Microbiology. PMID 31704684 DOI: 10.1128/Aem.02242-19 |
0.31 |
|
| 2019 |
Beach NK, Noguera DR. Design and Assessment of Species-Level qPCR Primers Targeting Comammox. Frontiers in Microbiology. 10: 36. PMID 30766515 DOI: 10.3389/Fmicb.2019.00036 |
0.335 |
|
| 2017 |
Lawson CE, Wu S, Bhattacharjee AS, Hamilton JJ, McMahon KD, Goel R, Noguera DR. Metabolic network analysis reveals microbial community interactions in anammox granules. Nature Communications. 8: 15416. PMID 28561030 DOI: 10.1038/Ncomms15416 |
0.302 |
|
| 2017 |
Oyserman BO, Martirano JM, Wipperfurth S, Owen BR, Noguera DR, McMahon KD. Community Assembly and Ecology of Activated Sludge Under Photosynthetic Feast/Famine Conditions. Environmental Science & Technology. PMID 28240542 DOI: 10.1021/Acs.Est.6B03976 |
0.304 |
|
| 2015 |
Noguera DR. Could in situ DNA-hybridization chain reaction enable simple and effective detection of identity and function in whole cell hybridizations? Environmental Microbiology. 17: 2559-61. PMID 26239483 DOI: 10.1111/1462-2920.12969 |
0.324 |
|
| 2015 |
Imam S, Noguera DR, Donohue TJ. An integrated approach to reconstructing genome-scale transcriptional regulatory networks. Plos Computational Biology. 11: e1004103. PMID 25723545 DOI: 10.1371/Journal.Pcbi.1004103 |
0.303 |
|
| 2015 |
Fitzgerald CM, Camejo P, Oshlag JZ, Noguera DR. Ammonia-oxidizing microbial communities in reactors with efficient nitrification at low-dissolved oxygen. Water Research. 70: 38-51. PMID 25506762 DOI: 10.1016/J.Watres.2014.11.041 |
0.325 |
|
| 2014 |
Noguera DR, Wright ES, Camejo P, Yilmaz LS. Mathematical tools to optimize the design of oligonucleotide probes and primers. Applied Microbiology and Biotechnology. 98: 9595-608. PMID 25359473 DOI: 10.1007/S00253-014-6165-X |
0.76 |
|
| 2014 |
Wright ES, Yilmaz LS, Corcoran AM, Ökten HE, Noguera DR. Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification. Applied and Environmental Microbiology. 80: 5124-33. PMID 24928876 DOI: 10.1128/Aem.01685-14 |
0.785 |
|
| 2014 |
Wright ES, Yilmaz LS, Ram S, Gasser JM, Harrington GW, Noguera DR. Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates. Environmental Microbiology. 16: 1354-65. PMID 24750536 DOI: 10.1111/1462-2920.12259 |
0.748 |
|
| 2014 |
Kang D, Noguera DR. Candidatus
Accumulibacter phosphatis: Elusive Bacterium Responsible for Enhanced Biological Phosphorus Removal Journal of Environmental Engineering. 140: 2-10. DOI: 10.1061/(Asce)Ee.1943-7870.0000781 |
0.301 |
|
| 2012 |
Yilmaz LS, Loy A, Wright ES, Wagner M, Noguera DR. Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics. Plos One. 7: e43862. PMID 22952791 DOI: 10.1371/Journal.Pone.0043862 |
0.782 |
|
| 2012 |
Okten HE, Yilmaz LS, Noguera DR. Exploring the in situ accessibility of small subunit ribosomal RNA of members of the domains Bacteria and Eukarya to oligonucleotide probes. Systematic and Applied Microbiology. 35: 485-95. PMID 22264799 DOI: 10.1016/J.Syapm.2011.11.001 |
0.775 |
|
| 2012 |
Wright ES, Yilmaz LS, Noguera DR. DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Applied and Environmental Microbiology. 78: 717-25. PMID 22101057 DOI: 10.1128/Aem.06516-11 |
0.715 |
|
| 2011 |
Imam S, Yilmaz S, Sohmen U, Gorzalski AS, Reed JL, Noguera DR, Donohue TJ. iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network. Bmc Systems Biology. 5: 116. PMID 21777427 DOI: 10.1186/1752-0509-5-116 |
0.314 |
|
| 2011 |
Yilmaz LS, Parnerkar S, Noguera DR. mathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization. Applied and Environmental Microbiology. 77: 1118-22. PMID 21148691 DOI: 10.1128/Aem.01733-10 |
0.776 |
|
| 2010 |
Yilmaz LS, Kontur WS, Sanders AP, Sohmen U, Donohue TJ, Noguera DR. Electron partitioning during light- and nutrient-powered hydrogen production by Rhodobacter sphaeroides Bioenergy Research. 3: 55-66. DOI: 10.1007/S12155-009-9072-8 |
0.706 |
|
| 2009 |
Flowers JJ, He S, Yilmaz S, Noguera DR, McMahon KD. Denitrification capabilities of two biological phosphorus removal sludges dominated by different "Candidatus Accumulibacter" clades. Environmental Microbiology Reports. 1: 583-588. PMID 20808723 DOI: 10.1111/J.1758-2229.2009.00090.X |
0.303 |
|
| 2008 |
Park HD, Noguera DR. Nitrospira community composition in nitrifying reactors operated with two different dissolved oxygen levels. Journal of Microbiology and Biotechnology. 18: 1470-4. PMID 18756110 |
0.443 |
|
| 2008 |
Yilmaz LS, Bergsven LI, Noguera DR. Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization. Environmental Microbiology. 10: 2872-85. PMID 18707615 DOI: 10.1111/J.1462-2920.2008.01719.X |
0.754 |
|
| 2008 |
Hoshino T, Yilmaz LS, Noguera DR, Daims H, Wagner M. Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH. Applied and Environmental Microbiology. 74: 5068-77. PMID 18552182 DOI: 10.1128/Aem.00208-08 |
0.77 |
|
| 2007 |
Park HD, Noguera DR. Characterization of two ammonia-oxidizing bacteria isolated from reactors operated with low dissolved oxygen concentrations. Journal of Applied Microbiology. 102: 1401-17. PMID 17448175 DOI: 10.1111/J.1365-2672.2006.03176.X |
0.489 |
|
| 2007 |
Yilmaz LS, Noguera DR. Development of thermodynamic models for simulating probe dissociation profiles in fluorescence in situ hybridization. Biotechnology and Bioengineering. 96: 349-63. PMID 16878331 DOI: 10.1002/Bit.21114 |
0.775 |
|
| 2006 |
Perez-Feito R, Noguera DR. Recovery of polyhydroxyalkanoate from activated sludge in an enhanced biological phosphorus removal bench-scale reactor. Water Environment Research : a Research Publication of the Water Environment Federation. 78: 770-5. PMID 16929649 DOI: 10.2175/106143006X99803 |
0.304 |
|
| 2006 |
Park HD, Whang LM, Reusser SR, Noguera DR. Taking advantage of aerated-anoxic operation in a full-scale University of Cape Town process. Water Environment Research : a Research Publication of the Water Environment Federation. 78: 637-42. PMID 16894988 DOI: 10.2175/106143006X99786 |
0.512 |
|
| 2006 |
Maixner F, Noguera DR, Anneser B, Stoecker K, Wegl G, Wagner M, Daims H. Nitrite concentration influences the population structure of Nitrospira-like bacteria. Environmental Microbiology. 8: 1487-95. PMID 16872410 DOI: 10.1111/J.1462-2920.2006.01033.X |
0.367 |
|
| 2006 |
Perez-Feito R, Peccia J, Noguera DR. Comparison between direct microscopy and flow cytometry for rRNA-based quantification of Candidatus Accumulibacter phosphatis in activated sludge. Water Environment Research : a Research Publication of the Water Environment Federation. 78: 181-8. PMID 16566525 DOI: 10.2175/106143005X89634 |
0.35 |
|
| 2006 |
Yilmaz LS, Okten HE, Noguera DR. Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides. Applied and Environmental Microbiology. 72: 733-44. PMID 16391113 DOI: 10.1128/AEM.72.1.733-744.2006 |
0.789 |
|
| 2006 |
Goel RK, Noguera DR. Evaluation of sludge yield and phosphorus removal in a Cannibal solids reduction process Journal of Environmental Engineering. 132: 1331-1337. DOI: 10.1061/(Asce)0733-9372(2006)132:10(1331) |
0.304 |
|
| 2005 |
Pizarro GE, Teixeira J, Sepúlveda M, Noguera DR. Bitwise implementation of a two-dimensional cellular automata biofilm model Journal of Computing in Civil Engineering. 19: 258-268. DOI: 10.1061/(Asce)0887-3801(2005)19:3(258) |
0.576 |
|
| 2005 |
Fleming KK, Harrington GW, Noguera DR. Nitrification potential curves: a new strategy for nitrification prevention Journal - American Water Works Association. 97: 90-99. DOI: 10.1002/J.1551-8833.2005.Tb07453.X |
0.311 |
|
| 2004 |
Yilmaz LS, Noguera DR. Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization. Applied and Environmental Microbiology. 70: 7126-39. PMID 15574909 DOI: 10.1128/Aem.70.12.7126-7139.2004 |
0.779 |
|
| 2004 |
Morgenroth E, Eberl HJ, van Loosdrecht MC, Noguera DR, Pizarro GE, Picioreanu C, Rittmann BE, Schwarz AO, Wanner O. Comparing biofilm models for a single species biofilm system. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 49: 145-54. PMID 15303735 DOI: 10.2166/Wst.2004.0826 |
0.587 |
|
| 2004 |
Noguera DR, Morgenroth E. Introduction to the IWA Task Group on Biofilm Modeling Water Science and Technology. 49: 131-136. PMID 15303733 DOI: 10.2166/Wst.2004.0822 |
0.309 |
|
| 2004 |
Park HD, Noguera DR. Evaluating the effect of dissolved oxygen on ammonia-oxidizing bacterial communities in activated sludge. Water Research. 38: 3275-86. PMID 15276744 DOI: 10.1016/J.Watres.2004.04.047 |
0.511 |
|
| 2004 |
Noguera D, Picioreanu C. Results from the multi-species Benchmark Problem 3 (BM3) using two-dimensional models Water Science and Technology. 49: 169-176. DOI: 10.2166/Wst.2004.0833 |
0.306 |
|
| 2003 |
Regan JM, Oldenburg PS, Park HD, Harrington GW, Noguera DR. Simultaneous determination of bacterial viability and identity in biofilms using ethidium monoazide and fluorescent in situ hybridization. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 47: 123-8. PMID 12701916 |
0.535 |
|
| 2003 |
Regan JM, Harrington GW, Baribeau H, De Leon R, Noguera DR. Diversity of nitrifying bacteria in full-scale chloraminated distribution systems. Water Research. 37: 197-205. PMID 12465801 DOI: 10.1016/S0043-1354(02)00237-3 |
0.322 |
|
| 2003 |
Regan JM, Oldenburg PS, Park H, Harrington GW, Noguera DR. Simultaneous determination of bacterial viability and identity in biofilms using ethidium monoazide and fluorescent in situ hybridization Water Science and Technology. 47: 123-128. DOI: 10.2166/Wst.2003.0297 |
0.585 |
|
| 2002 |
Zilles JL, Peccia J, Noguera DR. Microbiology of enhanced biological phosphorus removal in aerated-anoxic Orbal processes. Water Environment Research : a Research Publication of the Water Environment Federation. 74: 428-36. PMID 12469947 DOI: 10.2175/106143002X140224 |
0.357 |
|
| 2002 |
Hung CH, Peccia J, Zilles JL, Noguera DR. Physical enrichment of polyphosphate-accumulating organisms in activated sludge. Water Environment Research : a Research Publication of the Water Environment Federation. 74: 354-61. PMID 12413136 DOI: 10.2175/106143002X140116 |
0.601 |
|
| 2002 |
Park HD, Regan JM, Noguera DR. Molecular analysis of ammonia-oxidizing bacterial populations in aerated-anoxic orbal processes. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 46: 273-80. PMID 12216636 DOI: 10.2166/Wst.2002.0489 |
0.528 |
|
| 2002 |
Zilles JL, Hung CH, Noguera DR. Presence of Rhodocyclus in a full-scale wastewater treatment plant and their participation in enhanced biological phosphorus removal. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 46: 123-8. PMID 12216613 DOI: 10.2166/Wst.2002.0467 |
0.594 |
|
| 2002 |
Zilles JL, Peccia J, Kim MW, Hung CH, Noguera DR. Involvement of Rhodocyclus-related organisms in phosphorus removal in full-scale wastewater treatment plants. Applied and Environmental Microbiology. 68: 2763-9. PMID 12039731 DOI: 10.1128/Aem.68.6.2763-2769.2002 |
0.592 |
|
| 2002 |
Regan JM, Harrington GW, Noguera DR. Ammonia- and nitrite-oxidizing bacterial communities in a pilot-scale chloraminated drinking water distribution system. Applied and Environmental Microbiology. 68: 73-81. PMID 11772611 DOI: 10.1128/Aem.68.1.73-81.2002 |
0.307 |
|
| 2001 |
Pizarro G, Griffeath D, Noguera DR. Quantitative Cellular Automaton Model for Biofilms Journal of Environmental Engineering. 127: 782-789. DOI: 10.1061/(Asce)0733-9372(2001)127:9(782) |
0.585 |
|
| 2000 |
Noguera D, Pizarro G, Clapp L. Mathematical modeling of trichloroethylene (TCE) degradation in membrane-attached biofilms Water Science and Technology. 41: 239-244. DOI: 10.2166/Wst.2000.0451 |
0.581 |
|
| 1999 |
Noguera DR, Okabe S, Picioreanu C. Biofilm modeling: present status and future directions Water Science and Technology. 39: 273-278. DOI: 10.1016/S0273-1223(99)00178-X |
0.312 |
|
| 1999 |
Clapp LW, Regan JM, Ali F, Newman JD, Park JK, Noguera DR. Activity, structure, and stratification of membrane-attached methanotrophic biofilms cometabolically degrading trichloroethylene Water Science and Technology. 39: 153-161. DOI: 10.1016/S0273-1223(99)00163-8 |
0.31 |
|
| 1999 |
Noguera DR, Pizarro G, Stahl DA, Rittmann BE. Simulation of multispecies biofilm development in three dimensions Water Science and Technology. 39: 123-130. DOI: 10.1016/S0273-1223(99)00159-6 |
0.598 |
|
| 1998 |
Wagner M, Noguera DR, Juretschko S, Rath G, Koops H, Schleifer K. Combining fluorescent in situ hybridization (fish) with cultivation and mathematical modeling to study population structure and function of ammonia-oxidizing bacteria in activated sludge Water Science and Technology. 37: 441-449. DOI: 10.1016/S0273-1223(98)00143-7 |
0.363 |
|
| 1994 |
Raskin L, Poulsen LK, Noguera DR, Rittmann BE, Stahl DA. Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization. Applied and Environmental Microbiology. 60: 1241-1248. DOI: 10.1128/Aem.60.4.1241-1248.1994 |
0.416 |
|
| 1994 |
Noguera DR, Araki N, Rittmann BE. Soluble microbial products (SMP) in anaerobic chemostats Biotechnology and Bioengineering. 44: 1040-1047. DOI: 10.1002/Bit.260440904 |
0.3 |
|
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