| Year |
Citation |
Score |
| 2024 |
Flores VS, Amgarten DE, Iha BKV, Ryon KA, Danko D, Tierney BT, Mason C, da Silva AM, Setubal JC. Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium. Scientific Reports. 14: 7913. PMID 38575625 DOI: 10.1038/s41598-024-58226-0 |
0.375 |
|
| 2023 |
Laux M, Piroupo CM, Setubal JC, Giani A. The Raphidiopsis (= Cylindrospermopsis) raciborskii pangenome updated: Two new metagenome-assembled genomes from the South American clade. Harmful Algae. 129: 102518. PMID 37951618 DOI: 10.1016/j.hal.2023.102518 |
0.37 |
|
| 2022 |
Carhuaricra Huaman DE, Luna Espinoza LR, Rodríguez Cueva CL, Duran Gonzales CG, Rosadio Alcántara RH, Setubal JC, Maturrano Hernández L. Genomic Characterization of Typhimurium Isolated from Guinea Pigs with Salmonellosis in Lima, Peru. Microorganisms. 10. PMID 36144328 DOI: 10.3390/microorganisms10091726 |
0.346 |
|
| 2022 |
Balcão VM, Basu A, Cieza B, Rossi FN, Pereira C, Vila MM, Setubal JC, Ha T, da Silva AM. -tailed lytic phages: genome mechanical analysis and putative correlation with virion morphogenesis yield. Future Microbiology. 17: 1009-1026. PMID 35880493 DOI: 10.2217/fmb-2021-0293 |
0.324 |
|
| 2022 |
Justo Arevalo S, Zapata Sifuentes D, Cuba Portocarrero A, Brescia Reátegui M, Monge Pimentel C, Farage Martins L, Marques Pierry P, Morais Piroupo C, Guerra Santa Cruz A, Quiñones Aguilar M, Shaker Farah C, Setubal JC, da Silva AM. Genomic Characterization of Isolated from Mine Tailings in Peru and Evaluation of Its Cyanide-Degrading Enzyme CynD. Applied and Environmental Microbiology. e0091622. PMID 35762789 DOI: 10.1128/aem.00916-22 |
0.361 |
|
| 2022 |
Uceda-Campos G, Feitosa-Junior OR, Santiago CRN, Pierry PM, Zaini PA, de Santana WO, Martins-Junior J, Barbosa D, Digiampietri LA, Setubal JC, da Silva AM. Comparative Genomics of Explores Candidate Host-Specificity Determinants and Expands the Known Repertoire of Mobile Genetic Elements and Immunity Systems. Microorganisms. 10. PMID 35630358 DOI: 10.3390/microorganisms10050914 |
0.759 |
|
| 2022 |
Marquioni V, Rossi FPN, Mendonça DC, Martins LF, Behlau F, Setubal JC, da Silva AM, Novo-Mansur MTM. Isolation and characterization of vB_XciM_LucasX, a new jumbo phage that infects Xanthomonas citri and Xanthomonas fuscans. Plos One. 17: e0266891. PMID 35421196 DOI: 10.1371/journal.pone.0266891 |
0.344 |
|
| 2022 |
Nakamura Gouvea N, Alves Lima C, Benites LF, Iha C, Maracaja Coutinho V, Aliaga Tobar V, Amaral M, Yokoya NS, Marinho Soriano E, Graminha MAS, Collén J, Cabral Oliveira M, Setubal JC, Colepicolo P. Insights into agar and secondary metabolite pathways from the genome of the red alga Gracilaria domingensis (Rhodophyta: Gracilariales). Journal of Phycology. PMID 35090189 DOI: 10.1111/jpy.13238 |
0.378 |
|
| 2021 |
Setubal JC. Metagenome-assembled genomes: concepts, analogies, and challenges. Biophysical Reviews. 13: 905-909. PMID 35059016 DOI: 10.1007/s12551-021-00865-y |
0.347 |
|
| 2021 |
Rangel LT, Soucy SM, Setubal JC, Gogarten JP, Fournier GP. An efficient, non-phylogenetic method for detecting genes sharing evolutionary signals in phylogenomic datasets. Genome Biology and Evolution. PMID 34390574 DOI: 10.1093/gbe/evab187 |
0.727 |
|
| 2021 |
Assis RAB, Varani AM, Sagawa CHD, Patané JSL, Setubal JC, Uceda-Campos G, da Silva AM, Zaini PA, Almeida NF, Moreira LM, Dandekar AM. A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence. Genomics. PMID 34089784 DOI: 10.1016/j.ygeno.2021.06.003 |
0.377 |
|
| 2020 |
Felestrino ÉB, Sanchez AB, Caneschi WL, Lemes CGC, Assis RAB, Cordeiro IF, Fonseca NP, Villa MM, Vieira IT, Kamino LHY, do Carmo FF, da Silva AM, Thomas AM, Patané JSL, Ferreira FC, ... ... Setubal JC, et al. Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant. Plos One. 15: e0241546. PMID 33151992 DOI: 10.1371/journal.pone.0241546 |
0.396 |
|
| 2020 |
Pierry PM, de Santana WO, Kitajima JP, Martins-Junior J, Zaini P, Uceda-Campos G, Feitosa-Junior OR, Pessoa PIS, Coletta-Filho H, de Souza AA, Machado MA, Gesteira AS, Martins LF, Amaral MS, Beckedorff F, ... ... Setubal JC, et al. High-quality draft genome sequence resources of eight strains isolated from citrus, coffee, plum and hibiscus in South America. Phytopathology. PMID 32520631 DOI: 10.1094/PHYTO-05-20-0162-A |
0.318 |
|
| 2020 |
Zimpel CK, Patané JSL, Guedes ACP, de Souza RF, Silva-Pereira TT, Camargo NCS, de Souza Filho AF, Ikuta CY, Neto JSF, Setubal JC, Heinemann MB, Guimaraes AMS. Global Distribution and Evolution of Lineages. Frontiers in Microbiology. 11: 843. PMID 32477295 DOI: 10.3389/fmicb.2020.00843 |
0.338 |
|
| 2019 |
Caneschi WL, Sanchez AB, Felestrino ÉB, Lemes CGC, Cordeiro IF, Fonseca NP, Villa MM, Vieira IT, Moraes LÂG, Assis RAB, do Carmo FF, Kamino LHY, Silva RS, Ferro JA, Ferro MIT, ... ... Setubal JC, et al. Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments. Scientific Reports. 9: 18006. PMID 31784663 DOI: 10.1038/s41598-019-54601-4 |
0.365 |
|
| 2019 |
Fonseca NP, Patané JSL, Varani AM, Felestrino ÉB, Caneschi WL, Sanchez AB, Cordeiro IF, Lemes CGC, Assis RAB, Garcia CCM, Belasque J, Martins J, Facincani AP, Ferreira RM, Jaciani FJ, ... ... Setubal JC, et al. Analyses of Seven New Genomes of pv. Strains, Causative Agents of Citrus Canker B and C, Show a Reduced Repertoire of Pathogenicity-Related Genes. Frontiers in Microbiology. 10: 2361. PMID 31681223 DOI: 10.3389/fmicb.2019.02361 |
0.412 |
|
| 2019 |
Patané JSL, Martins J, Rangel LT, Belasque J, Digiampietri LA, Facincani AP, Ferreira RM, Jaciani FJ, Zhang Y, Varani AM, Almeida NF, Wang N, Ferro JA, Moreira LM, Setubal JC. Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses. Bmc Genomics. 20: 700. PMID 31500575 DOI: 10.1186/s12864-019-6007-4 |
0.745 |
|
| 2019 |
Rangel LT, Marden J, Colston S, Setubal JC, Graf J, Gogarten JP. Identification and characterization of putative Aeromonas spp. T3SS effectors. Plos One. 14: e0214035. PMID 31163020 DOI: 10.1371/Journal.Pone.0214035 |
0.759 |
|
| 2018 |
Amgarten D, Braga LPP, da Silva AM, Setubal JC. MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins. Frontiers in Genetics. 9: 304. PMID 30131825 DOI: 10.3389/fgene.2018.00304 |
0.342 |
|
| 2018 |
Patané JSL, Martins J, Setubal JC. Phylogenomics. Methods in Molecular Biology (Clifton, N.J.). 1704: 103-187. PMID 29277865 DOI: 10.1007/978-1-4939-7463-4_5 |
0.337 |
|
| 2018 |
Setubal JC, Almeida NF, Wattam AR. Comparative Genomics for Prokaryotes. Methods in Molecular Biology (Clifton, N.J.). 1704: 55-78. PMID 29277863 DOI: 10.1007/978-1-4939-7463-4_3 |
0.385 |
|
| 2017 |
Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM. Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae. Scientific Reports. 7: 16133. PMID 29170530 DOI: 10.1038/S41598-017-16325-1 |
0.738 |
|
| 2017 |
Wang N, Pierson EA, Setubal JC, Xu J, Levy JG, Zhang Y, Li J, Rangel LT, Martins J. The Candidatus Liberibacter-Host Interface: Insights into Pathogenesis Mechanisms and Disease Control. Annual Review of Phytopathology. PMID 28637377 DOI: 10.1146/annurev-phyto-080516-035513 |
0.765 |
|
| 2017 |
Lemos LN, Pereira RV, Quaggio RB, Martins LF, Moura LMS, da Silva AR, Antunes LP, da Silva AM, Setubal JC. Genome-Centric Analysis of a Thermophilic and Cellulolytic Bacterial Consortium Derived from Composting. Frontiers in Microbiology. 8: 644. PMID 28469608 DOI: 10.3389/fmicb.2017.00644 |
0.403 |
|
| 2017 |
Patané JS, Martins J, Beatriz Castelão A, Nishibe C, Montera L, Bigi F, Zumárraga MJ, Cataldi AA, Fonseca Junior A, Roxo E, Luiza A, Osório AR, Jorge Ufms KS, Thacker TC, Almeida NF, ... ... Setubal JC, et al. Patterns and processes of Mycobacterium bovis evolution revealed by phylogenomic analyses. Genome Biology and Evolution. PMID 28201585 DOI: 10.1093/Gbe/Evx022 |
0.364 |
|
| 2016 |
Antunes LP, Martins LF, Pereira RV, Thomas AM, Barbosa D, Lemos LN, Silva GM, Moura LM, Epamino GW, Digiampietri LA, Lombardi KC, Ramos PL, Quaggio RB, de Oliveira JC, Pascon RC, ... ... Setubal JC, et al. Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics. Scientific Reports. 6: 38915. PMID 27941956 DOI: 10.1038/srep38915 |
0.738 |
|
| 2016 |
Paez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, Szeto E, Pillay M, Huang J, Markowitz VM, Nielsen T, Huntemann M, K Reddy TB, Pavlopoulos GA, Sullivan MB, Campbell BJ, ... ... Setubal JC, et al. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Research. PMID 27799466 DOI: 10.1093/Nar/Gkw1030 |
0.338 |
|
| 2016 |
Lima-Junior JD, Viana-Niero C, Conde Oliveira DV, Machado GE, Rabello MC, Martins-Junior J, Martins LF, Digiampietri LA, da Silva AM, Setubal JC, Russell DA, Jacobs-Sera D, Pope WH, Hatfull GF, Leão SC. Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U. Bmc Microbiology. 16: 111. PMID 27316672 DOI: 10.1186/S12866-016-0734-3 |
0.742 |
|
| 2016 |
Guarischi-Sousa R, Puigvert M, Coll NS, Siri MI, Pianzzola MJ, Valls M, Setubal JC. Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031. Standards in Genomic Sciences. 11: 7. PMID 26779304 DOI: 10.1186/S40793-016-0131-4 |
0.393 |
|
| 2015 |
Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, ... ... Setubal JC, et al. Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Frontiers in Microbiology. 6: 535. PMID 26089818 DOI: 10.3389/Fmicb.2015.00535 |
0.305 |
|
| 2015 |
Zhang Y, Jalan N, Zhou X, Goss E, Jones JB, Setubal JC, Deng X, Wang N. Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas. The Isme Journal. PMID 25689023 DOI: 10.1038/Ismej.2015.15 |
0.386 |
|
| 2014 |
Wulff NA, Zhang S, Setubal JC, Almeida NF, Martins EC, Harakava R, Kumar D, Rangel LT, Foissac X, Bové JM, Gabriel DW. The complete genome sequence of 'Candidatus Liberibacter americanus', associated with Citrus huanglongbing. Molecular Plant-Microbe Interactions : Mpmi. 27: 163-76. PMID 24200077 DOI: 10.1094/Mpmi-09-13-0292-R |
0.752 |
|
| 2013 |
Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N. Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range. Bmc Genomics. 14: 551. PMID 23941402 DOI: 10.1186/1471-2164-14-551 |
0.374 |
|
| 2013 |
Martins LF, Antunes LP, Pascon RC, de Oliveira JC, Digiampietri LA, Barbosa D, Peixoto BM, Vallim MA, Viana-Niero C, Ostroski EH, Telles GP, Dias Z, da Cruz JB, Juliano L, Verjovski-Almeida S, ... ... Setubal JC, et al. Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms. Plos One. 8: e61928. PMID 23637931 DOI: 10.1371/Journal.Pone.0061928 |
0.715 |
|
| 2012 |
Yang K, Heath LS, Setubal JC. REGEN: Ancestral Genome Reconstruction for Bacteria. Genes. 3: 423-43. PMID 24704978 DOI: 10.3390/Genes3030423 |
0.544 |
|
| 2012 |
Dos Santos PC, Fang Z, Mason SW, Setubal JC, Dixon R. Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. Bmc Genomics. 13: 162. PMID 22554235 DOI: 10.1186/1471-2164-13-162 |
0.372 |
|
| 2011 |
Jalan N, Aritua V, Kumar D, Yu F, Jones JB, Graham JH, Setubal JC, Wang N. Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity. Journal of Bacteriology. 193: 6342-57. PMID 21908674 DOI: 10.1128/Jb.05777-11 |
0.302 |
|
| 2011 |
Cai R, Lewis J, Yan S, Liu H, Clarke CR, Campanile F, Almeida NF, Studholme DJ, Lindeberg M, Schneider D, Zaccardelli M, Setubal JC, Morales-Lizcano NP, Bernal A, Coaker G, et al. The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity. Plos Pathogens. 7: e1002130. PMID 21901088 DOI: 10.1371/Journal.Ppat.1002130 |
0.39 |
|
| 2011 |
Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, et al. Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. Bmc Genomics. 12: 146. PMID 21396108 DOI: 10.1186/1471-2164-12-146 |
0.421 |
|
| 2011 |
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Pühler A, Schlüter A. Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology. 155: 50-62. PMID 21329740 DOI: 10.1016/j.jbiotec.2011.01.010 |
0.304 |
|
| 2011 |
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, ... ... Setubal JC, et al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 43: 109-16. PMID 21186353 DOI: 10.1038/Ng.740 |
0.368 |
|
| 2011 |
Zhang H, Setubal JC, Zhan X, Zheng Z, Yu L, Wu J, Chen D. Component identification of electron transport chains in curdlan-producing Agrobacterium sp. ATCC 31749 and its genome-specific prediction using comparative genome and phylogenetic trees analysis. Journal of Industrial Microbiology & Biotechnology. 38: 667-77. PMID 20730594 DOI: 10.1007/s10295-010-0810-x |
0.35 |
|
| 2011 |
Yang K, Setubal JC. A whole genome simulator of prokaryote genome evolution 2011 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2011. 508-510. DOI: 10.1145/2147805.2147885 |
0.495 |
|
| 2011 |
Dias Z, Dias U, Setubal JC. Using inversion signatures to generate draft genome sequence scaffolds 2011 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2011. 39-48. DOI: 10.1145/2147805.2147810 |
0.307 |
|
| 2010 |
Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, Lindeberg M, Meng S, Chibucos MC, Tseng TT, Lomax J, Biehl B, Ireland A, Bird D, Dean RA, Glasner JD, Perna N, Setubal JC, et al. Unifying themes in microbial associations with animal and plant hosts described using the gene ontology. Microbiology and Molecular Biology Reviews : Mmbr. 74: 479-503. PMID 21119014 DOI: 10.1128/Mmbr.00017-10 |
0.342 |
|
| 2010 |
Moreira LM, Almeida NF, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF, Facincani AP, Ferraz AL, Ferro MI, Furlan LR, ... ... Setubal JC, et al. Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. Bmc Genomics. 11: 238. PMID 20388224 DOI: 10.1186/1471-2164-11-238 |
0.762 |
|
| 2010 |
Warren AS, Archuleta J, Feng WC, Setubal JC. Missing genes in the annotation of prokaryotic genomes. Bmc Bioinformatics. 11: 131. PMID 20230630 DOI: 10.1186/1471-2105-11-131 |
0.363 |
|
| 2010 |
Yang K, Setubal JC. Homology prediction refinement and reconstruction of gene content and order of ancestral bacterial genomes 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 230-236. DOI: 10.1145/1854776.1854810 |
0.526 |
|
| 2009 |
Dias-Neto E, Nunes DN, Giordano RJ, Sun J, Botz GH, Yang K, Setubal JC, Pasqualini R, Arap W. Next-generation phage display: integrating and comparing available molecular tools to enable cost-effective high-throughput analysis. Plos One. 4: e8338. PMID 20020040 DOI: 10.1371/Journal.Pone.0008338 |
0.488 |
|
| 2009 |
Chibucos MC, Tseng TT, Setubal JC. Describing commonalities in microbial effector delivery using the Gene Ontology. Trends in Microbiology. 17: 312-9. PMID 19576779 DOI: 10.1016/j.tim.2009.05.001 |
0.36 |
|
| 2009 |
Wattam AR, Williams KP, Snyder EE, Almeida NF, Shukla M, Dickerman AW, Crasta OR, Kenyon R, Lu J, Shallom JM, Yoo H, Ficht TA, Tsolis RM, Munk C, Tapia R, ... ... Setubal JC, et al. Analysis of ten Brucella genomes reveals evidence for horizontal gene transfer despite a preferred intracellular lifestyle. Journal of Bacteriology. 191: 3569-79. PMID 19346311 DOI: 10.1128/Jb.01767-08 |
0.366 |
|
| 2009 |
Gillespie JJ, Ammerman NC, Dreher-Lesnick SM, Rahman MS, Worley MJ, Setubal JC, Sobral BS, Azad AF. An anomalous type IV secretion system in Rickettsia is evolutionarily conserved. Plos One. 4: e4833. PMID 19279686 DOI: 10.1371/Journal.Pone.0004833 |
0.385 |
|
| 2009 |
Slater SC, Goldman BS, Goodner B, Setubal JC, Farrand SK, Nester EW, Burr TJ, Banta L, Dickerman AW, Paulsen I, Otten L, Suen G, Welch R, Almeida NF, Arnold F, et al. Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. Journal of Bacteriology. 191: 2501-11. PMID 19251847 DOI: 10.1128/Jb.01779-08 |
0.358 |
|
| 2009 |
Warren AS, Setubal JC. The Genome Reverse Compiler: an explorative annotation tool. Bmc Bioinformatics. 10: 35. PMID 19173744 DOI: 10.1186/1471-2105-10-35 |
0.336 |
|
| 2009 |
Almeida NF, Yan S, Lindeberg M, Studholme DJ, Schneider DJ, Condon B, Liu H, Viana CJ, Warren A, Evans C, Kemen E, Maclean D, Angot A, Martin GB, Jones JD, ... ... Setubal JC, et al. A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000. Molecular Plant-Microbe Interactions : Mpmi. 22: 52-62. PMID 19061402 DOI: 10.1094/Mpmi-22-1-0052 |
0.388 |
|
| 2008 |
Gillespie JJ, Williams K, Shukla M, Snyder EE, Nordberg EK, Ceraul SM, Dharmanolla C, Rainey D, Soneja J, Shallom JM, Vishnubhat ND, Wattam R, Purkayastha A, Czar M, Crasta O, ... Setubal JC, et al. Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life. Plos One. 3: e2018. PMID 19194535 DOI: 10.1371/Journal.Pone.0002018 |
0.369 |
|
| 2008 |
Yan S, Liu H, Mohr TJ, Jenrette J, Chiodini R, Zaccardelli M, Setubal JC, Vinatzer BA. Role of recombination in the evolution of the model plant pathogen Pseudomonas syringae pv. tomato DC3000, a very atypical tomato strain. Applied and Environmental Microbiology. 74: 3171-81. PMID 18378665 DOI: 10.1128/AEM.00180-08 |
0.311 |
|
| 2007 |
Venancio TM, DeMarco R, Almeida GT, Oliveira KC, Setubal JC, Verjovski-Almeida S. Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions. Bmc Genomics. 8: 407. PMID 17996068 DOI: 10.1186/1471-2164-8-407 |
0.323 |
|
| 2007 |
Yu GX, Snyder EE, Boyle SM, Crasta OR, Czar M, Mane SP, Purkayastha A, Sobral B, Setubal JC. A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case. Nucleic Acids Research. 35: 3953-62. PMID 17553834 DOI: 10.1093/nar/gkm377 |
0.436 |
|
| 2007 |
Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, ... ... Setubal JC, et al. PATRIC: the VBI PathoSystems Resource Integration Center. Nucleic Acids Research. 35: D401-6. PMID 17142235 DOI: 10.1093/Nar/Gkl858 |
0.309 |
|
| 2006 |
Lorenzini DM, da Silva PI, Soares MB, Arruda P, Setubal J, Daffre S. Discovery of immune-related genes expressed in hemocytes of the tarantula spider Acanthoscurria gomesiana. Developmental and Comparative Immunology. 30: 545-56. PMID 16386302 DOI: 10.1016/J.Dci.2005.09.001 |
0.641 |
|
| 2005 |
Digiampietri LA, Medeiros CB, Setubal JC. A framework based on Web service orchestration for bioinformatics workflow management. Genetics and Molecular Research : Gmr. 4: 535-42. PMID 16342038 |
0.673 |
|
| 2005 |
Setubal JC, Moreira LM, da Silva AC. Bacterial phytopathogens and genome science. Current Opinion in Microbiology. 8: 595-600. PMID 16125997 DOI: 10.1016/j.mib.2005.08.015 |
0.369 |
|
| 2005 |
Moreira LM, De Souza RF, Digiampietri LA, Da Silva AC, Setubal JC. Comparative analyses of Xanthomonas and Xylella complete genomes. Omics : a Journal of Integrative Biology. 9: 43-76. PMID 15805778 DOI: 10.1089/omi.2005.9.43 |
0.753 |
|
| 2004 |
Moreira LM, de Souza RF, Almeida NF, Setubal JC, Oliveira JC, Furlan LR, Ferro JA, da Silva AC. Comparative genomics analyses of citrus-associated bacteria. Annual Review of Phytopathology. 42: 163-84. PMID 15283664 DOI: 10.1146/annurev.phyto.42.040803.140310 |
0.404 |
|
| 2004 |
Nascimento AL, Verjovski-Almeida S, Van Sluys MA, Monteiro-Vitorello CB, Camargo LE, Digiampietri LA, Harstkeerl RA, Ho PL, Marques MV, Oliveira MC, Setubal JC, Haake DA, Martins EA. Genome features of Leptospira interrogans serovar Copenhageni. Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas MéDicas E BiolóGicas / Sociedade Brasileira De BiofíSica ... [Et Al.]. 37: 459-77. PMID 15064809 |
0.398 |
|
| 2004 |
Nascimento AL, Ko AI, Martins EA, Monteiro-Vitorello CB, Ho PL, Haake DA, Verjovski-Almeida S, Hartskeerl RA, Marques MV, Oliveira MC, Menck CF, Leite LC, Carrer H, Coutinho LL, Degrave WM, ... ... Setubal JC, et al. Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis. Journal of Bacteriology. 186: 2164-72. PMID 15028702 DOI: 10.1128/Jb.186.7.2164-2172.2004 |
0.417 |
|
| 2004 |
DeMarco R, Kowaltowski AT, Machado AA, Soares MB, Gargioni C, Kawano T, Rodrigues V, Madeira AM, Wilson RA, Menck CF, Setubal JC, Dias-Neto E, Leite LC, Verjovski-Almeida S. Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni. Journal of Virology. 78: 2967-78. PMID 14990715 DOI: 10.1128/Jvi.78.6.2967-2978.2004 |
0.353 |
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| 2003 |
Verjovski-Almeida S, DeMarco R, Martins EA, Guimarães PE, Ojopi EP, Paquola AC, Piazza JP, Nishiyama MY, Kitajima JP, Adamson RE, Ashton PD, Bonaldo MF, Coulson PS, Dillon GP, Farias LP, ... ... Setubal JC, et al. Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nature Genetics. 35: 148-57. PMID 12973350 DOI: 10.1038/Ng1237 |
0.32 |
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| 2003 |
Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB, Miyaki CY, Furlan LR, Camargo LE, da Silva AC, Moon DH, Takita MA, Lemos EG, Machado MA, Ferro MI, da Silva FR, Goldman MH, Goldman GH, ... ... Setubal JC, et al. Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa. Journal of Bacteriology. 185: 1018-26. PMID 12533478 DOI: 10.1128/Jb.185.3.1018-1026.2003 |
0.361 |
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| 2002 |
Van Sluys MA, Monteiro-Vitorello CB, Camargo LE, Menck CF, Da Silva AC, Ferro JA, Oliveira MC, Setubal JC, Kitajima JP, Simpson AJ. Comparative genomic analysis of plant-associated bacteria. Annual Review of Phytopathology. 40: 169-89. PMID 12147758 DOI: 10.1146/Annurev.Phyto.40.030402.090559 |
0.409 |
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| 2002 |
da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, ... ... Setubal JC, et al. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature. 417: 459-63. PMID 12024217 DOI: 10.1038/417459a |
0.398 |
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| 2001 |
Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE, Almeida NF, Woo L, Chen Y, Paulsen IT, Eisen JA, Karp PD, et al. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science (New York, N.Y.). 294: 2317-23. PMID 11743193 DOI: 10.1126/Science.1066804 |
0.359 |
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| 2000 |
Simpson AJ, Reinach FC, Arruda P, Abreu FA, Acencio M, Alvarenga R, Alves LM, Araya JE, Baia GS, Baptista CS, Barros MH, Bonaccorsi ED, Bordin S, Bové JM, Briones MR, ... ... Setubal JC, et al. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis. Nature. 406: 151-9. PMID 10910347 DOI: 10.1038/35018003 |
0.669 |
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