| Year |
Citation |
Score |
| 2019 |
Wang H, Yue T, Yang J, Wu W, Xing EP. Deep mixed model for marginal epistasis detection and population stratification correction in genome-wide association studies. Bmc Bioinformatics. 20: 656. PMID 31881907 DOI: 10.1186/S12859-019-3300-9 |
0.332 |
|
| 2019 |
Marchetti-Bowick M, Yu Y, Wu W, Xing EP. A penalized regression model for the joint estimation of eQTL associations and gene network structure The Annals of Applied Statistics. 13: 248-270. DOI: 10.1214/18-Aoas1186 |
0.405 |
|
| 2018 |
Kampffmeyer M, Dong N, Liang X, Zhang Y, Xing EP. ConnNet: A Long-Range Relation-Aware Pixel-Connectivity Network for Salient Segmentation. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. PMID 30571633 DOI: 10.1109/Tip.2018.2886997 |
0.316 |
|
| 2018 |
Wang H, Lengerich BJ, Aragam B, Xing EP. Precision Lasso: Accounting for Correlations and Linear Dependencies in High-Dimensional Genomic Data. Bioinformatics (Oxford, England). PMID 30184048 DOI: 10.1093/Bioinformatics/Bty750 |
0.325 |
|
| 2018 |
Wang H, Aragam B, Xing EP. Variable Selection in Heterogeneous Datasets: A Truncated-rank Sparse Linear Mixed Model with Applications to Genome-wide Association Studies. Methods (San Diego, Calif.). PMID 29705212 DOI: 10.1016/J.Ymeth.2018.04.021 |
0.373 |
|
| 2018 |
Wang H, Liu X, Xiao Y, Xu M, Xing EP. Multiplex Confounding Factor Correction for Genomic Association Mapping with Squared Sparse Linear Mixed Model. Methods (San Diego, Calif.). PMID 29705210 DOI: 10.1016/J.Ymeth.2018.04.020 |
0.39 |
|
| 2017 |
Lee S, Wang H, Xing EP. Backward Genotype-Transcript-Phenotype Association Mapping. Methods (San Diego, Calif.). PMID 28917724 DOI: 10.1016/J.Ymeth.2017.09.004 |
0.322 |
|
| 2017 |
Xu M, Chai X, Muthakana H, Liang X, Yang G, Zeev-Ben-Mordehai T, Xing EP. Deep learning-based subdivision approach for large scale macromolecules structure recovery from electron cryo tomograms. Bioinformatics (Oxford, England). 33: i13-i22. PMID 28881965 DOI: 10.1093/Bioinformatics/Btx230 |
0.352 |
|
| 2017 |
Zhou Y, Yuan K, Yu Y, Ni X, Xie P, Xing EP, Xu S. Inference of multiple-wave population admixture by modeling decay of linkage disequilibrium with polynomial functions. Heredity. PMID 28198814 DOI: 10.1038/Hdy.2017.5 |
0.349 |
|
| 2016 |
Lee S, Kong S, Xing EP. A network-driven approach for genome-wide association mapping. Bioinformatics (Oxford, England). 32: i164-i173. PMID 27307613 DOI: 10.1093/Bioinformatics/Btw270 |
0.375 |
|
| 2016 |
Marchetti-Bowick M, Yin J, Howrylak JA, Xing EP. A Time-Varying Group Sparse Additive Model for Genome-Wide Association Studies of Dynamic Complex Traits. Bioinformatics (Oxford, England). PMID 27296983 DOI: 10.1093/Bioinformatics/Btw347 |
0.344 |
|
| 2016 |
Lee S, Lozano A, Kambadur P, Xing EP. An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 23: 372-389. PMID 27159633 DOI: 10.1089/Cmb.2015.0202 |
0.366 |
|
| 2016 |
Guo Z, Zhang Z(, Xing EP, Faloutsos C. Multimodal Data Mining in a Multimedia Database Based on Structured Max Margin Learning Acm Transactions On Knowledge Discovery From Data. 10: 1-30. DOI: 10.1145/2742549 |
0.373 |
|
| 2015 |
Wang X, Xing EP, Schaid DJ. Kernel methods for large-scale genomic data analysis. Briefings in Bioinformatics. 16: 183-92. PMID 25053743 DOI: 10.1093/Bib/Bbu024 |
0.384 |
|
| 2015 |
Xing EP, Ho Q, Dai W, Kim JK, Wei J, Lee S, Zheng X, Xie P, Kumar A, Yu Y. Petuum: A New Platform for Distributed Machine Learning on Big Data Ieee Transactions On Big Data. 1: 49-67. DOI: 10.1109/Tbdata.2015.2472014 |
0.325 |
|
| 2014 |
Kolar M, Liu H, Xing EP. Graph Estimation From Multi-Attribute Data. Journal of Machine Learning Research : Jmlr. 15: 1713-1750. PMID 25620892 |
0.651 |
|
| 2014 |
Parikh AP, Curtis RE, Kuhn I, Becker-Weimann S, Bissell M, Xing EP, Wu W. Network analysis of breast cancer progression and reversal using a tree-evolving network algorithm. Plos Computational Biology. 10: e1003713. PMID 25057922 DOI: 10.1371/Journal.Pcbi.1003713 |
0.33 |
|
| 2014 |
Xing EP, Curtis RE, Schoenherr G, Lee S, Yin J, Puniyani K, Wu W, Kinnaird P. GWAS in a box: statistical and visual analytics of structured associations via GenAMap. Plos One. 9: e97524. PMID 24905018 DOI: 10.1371/Journal.Pone.0097524 |
0.758 |
|
| 2014 |
Shringarpure S, Xing EP. Effects of sample selection bias on the accuracy of population structure and ancestry inference. G3 (Bethesda, Md.). 4: 901-11. PMID 24637351 DOI: 10.1534/G3.113.007633 |
0.348 |
|
| 2014 |
Parikh AP, Wu W, Xing EP. Robust reverse engineering of dynamic gene networks under sample size heterogeneity. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 265-76. PMID 24297553 |
0.318 |
|
| 2014 |
Kim S, Xing EP. Exploiting genome structure in association analysis. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 21: 345-60. PMID 21548809 DOI: 10.1089/Cmb.2009.0224 |
0.337 |
|
| 2014 |
Yang D, Wen M, Kumar A, Xing EP, Rose CP. Towards an integration of text and graph clustering methods as a lens for studying social interaction in MOOCs The International Review of Research in Open and Distributed Learning. 15. DOI: 10.19173/Irrodl.V15I5.1853 |
0.323 |
|
| 2013 |
Puniyani K, Xing EP. NP-MuScL: unsupervised global prediction of interaction networks from multiple data sources. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 892-904. PMID 24134391 DOI: 10.1089/Cmb.2013.0093 |
0.764 |
|
| 2013 |
Puniyani K, Xing EP. GINI: from ISH images to gene interaction networks. Plos Computational Biology. 9: e1003227. PMID 24130465 DOI: 10.1371/Journal.Pcbi.1003227 |
0.777 |
|
| 2013 |
Curtis RE, Kim S, Woolford JL, Xu W, Xing EP. Structured association analysis leads to insight into Saccharomyces cerevisiae gene regulation by finding multiple contributing eQTL hotspots associated with functional gene modules. Bmc Genomics. 14: 196. PMID 23514438 DOI: 10.1186/1471-2164-14-196 |
0.457 |
|
| 2013 |
Chen N, Zhu J, Sun F, Xing EP. Large-margin predictive latent subspace learning for multiview data analysis. Ieee Transactions On Pattern Analysis and Machine Intelligence. 34: 2365-78. PMID 22392706 DOI: 10.1109/Tpami.2012.64 |
0.371 |
|
| 2012 |
Kolar M, Xing EP. Estimating networks with jumps. Electronic Journal of Statistics. 6: 2069-2106. PMID 25013533 DOI: 10.1214/12-Ejs739 |
0.664 |
|
| 2012 |
Ho Q, Parikh AP, Xing EP. Multiscale Community Blockmodel for Network Exploration. Journal of the American Statistical Association. 107. PMID 24288419 DOI: 10.1080/01621459.2012.682530 |
0.359 |
|
| 2012 |
Curtis RE, Xiang J, Parikh A, Kinnaird P, Xing EP. Enabling dynamic network analysis through visualization in TVNViewer. Bmc Bioinformatics. 13: 204. PMID 22897913 DOI: 10.1186/1471-2105-13-204 |
0.346 |
|
| 2012 |
Lee S, Xing EP. Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs. Bioinformatics (Oxford, England). 28: i137-46. PMID 22689753 DOI: 10.1093/Bioinformatics/Bts227 |
0.447 |
|
| 2012 |
Sohn KA, Ghahramani Z, Xing EP. Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach. Genetics. 191: 1295-308. PMID 22649082 DOI: 10.1534/Genetics.112.140228 |
0.578 |
|
| 2012 |
Curtis RE, Goyal A, Xing EP. Enhancing the usability and performance of structured association mapping algorithms using automation, parallelization, and visualization in the GenAMap software system. Bmc Genetics. 13: 24. PMID 22471660 DOI: 10.1186/1471-2156-13-24 |
0.312 |
|
| 2012 |
Kim S, Xing EP. Tree-guided group lasso for multi-response regression with structured sparsity, with an application to eQTL mapping The Annals of Applied Statistics. 6: 1095-1117. DOI: 10.1214/12-Aoas549 |
0.35 |
|
| 2012 |
Chen X, Lin Q, Kim S, Carbonell JG, Xing EP. Smoothing proximal gradient method for general structured sparse regression The Annals of Applied Statistics. 6: 719-752. DOI: 10.1214/11-Aoas514 |
0.344 |
|
| 2012 |
Puniyani K, Xing EP. Inferring gene interaction networks from ISH images via kernelized graphical models Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7577: 72-85. DOI: 10.1007/978-3-642-33783-3_6 |
0.775 |
|
| 2012 |
Kolar M, Xing EP. Estimating sparse precision matrices from data with missing values Proceedings of the 29th International Conference On Machine Learning, Icml 2012. 1: 551-558. |
0.588 |
|
| 2010 |
Ahmed A, Arnold A, Coelho LP, Kangas J, Sheikh AS, Xing E, Cohen W, Murphy RF. Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature. Web Semantics (Online). 8: 151-154. PMID 24991197 DOI: 10.1016/J.Websem.2010.04.002 |
0.54 |
|
| 2010 |
Puniyani K, Faloutsos C, Xing EP. SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images. Bioinformatics (Oxford, England). 26: i47-56. PMID 20529936 DOI: 10.1093/Bioinformatics/Btq172 |
0.753 |
|
| 2010 |
Puniyani K, Kim S, Xing EP. Multi-population GWA mapping via multi-task regularized regression. Bioinformatics (Oxford, England). 26: i208-16. PMID 20529908 DOI: 10.1093/Bioinformatics/Btq191 |
0.736 |
|
| 2010 |
Hanneke S, Fu W, Xing EP. Discrete temporal models of social networks Electronic Journal of Statistics. 4: 585-605. DOI: 10.1214/09-Ejs548 |
0.306 |
|
| 2010 |
Xing EP, Fu W, Song L. A state-space mixed membership blockmodel for dynamic network tomography The Annals of Applied Statistics. 4: 535-566. DOI: 10.1214/09-Aoas311 |
0.389 |
|
| 2010 |
Kolar M, Song L, Ahmed A, Xing EP. Estimating time-varying networks The Annals of Applied Statistics. 4: 94-123. DOI: 10.1214/09-Aoas308 |
0.717 |
|
| 2010 |
Coelho LP, Ahmed A, Arnold A, Kangas J, Sheikh AS, Xing EP, Cohen WW, Murphy RF. Structured literature image finder: Extracting information from text and images in biomedical literature Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6004: 23-32. DOI: 10.1007/978-3-642-13131-8_4 |
0.465 |
|
| 2009 |
Ahmed A, Xing EP, Cohen WW, Murphy RF. Structured Correspondence Topic Models for Mining Captioned Figures in Biological Literature. Kdd : Proceedings / International Conference On Knowledge Discovery & Data Mining. International Conference On Knowledge Discovery & Data Mining. 2009: 39-48. PMID 25485170 DOI: 10.1145/1557019.1557031 |
0.526 |
|
| 2009 |
Kim S, Xing EP. Statistical estimation of correlated genome associations to a quantitative trait network. Plos Genetics. 5: e1000587. PMID 19680538 DOI: 10.1371/Journal.Pgen.1000587 |
0.407 |
|
| 2009 |
Ahmed A, Xing EP. Recovering time-varying networks of dependencies in social and biological studies. Proceedings of the National Academy of Sciences of the United States of America. 106: 11878-83. PMID 19570995 DOI: 10.1073/Pnas.0901910106 |
0.588 |
|
| 2009 |
Fu W, Ray P, Xing EP. DISCOVER: a feature-based discriminative method for motif search in complex genomes. Bioinformatics (Oxford, England). 25: i321-9. PMID 19478006 DOI: 10.1093/Bioinformatics/Btp230 |
0.337 |
|
| 2009 |
Kim S, Sohn KA, Xing EP. A multivariate regression approach to association analysis of a quantitative trait network. Bioinformatics (Oxford, England). 25: i204-12. PMID 19477989 DOI: 10.1093/Bioinformatics/Btp218 |
0.567 |
|
| 2009 |
Song L, Kolar M, Xing EP. KELLER: estimating time-varying interactions between genes. Bioinformatics (Oxford, England). 25: i128-36. PMID 19477978 DOI: 10.1093/Bioinformatics/Btp192 |
0.666 |
|
| 2009 |
Shringarpure S, Xing EP. mStruct: inference of population structure in light of both genetic admixing and allele mutations. Genetics. 182: 575-93. PMID 19363128 DOI: 10.1534/Genetics.108.100222 |
0.374 |
|
| 2009 |
Howrylak JA, Dolinay T, Lucht L, Wang Z, Christiani DC, Sethi JM, Xing EP, Donahoe MP, Choi AM. Discovery of the gene signature for acute lung injury in patients with sepsis. Physiological Genomics. 37: 133-9. PMID 19174476 DOI: 10.1152/Physiolgenomics.90275.2008 |
0.319 |
|
| 2009 |
Sohn K, Xing EP. A hierarchical Dirichlet process mixture model for haplotype reconstruction from multi-population data The Annals of Applied Statistics. 3: 791-821. DOI: 10.1214/08-Aoas225 |
0.579 |
|
| 2008 |
Ray P, Shringarpure S, Kolar M, Xing EP. CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing. Plos Computational Biology. 4: e1000090. PMID 18535663 DOI: 10.1371/Journal.Pcbi.1000090 |
0.635 |
|
| 2008 |
Yang J, Yan R, Liu Y, Xing EP. Harmonium Models for Video Classification Statistical Analysis and Data Mining. 1: 23-37. DOI: 10.1002/Sam.V1:1 |
0.314 |
|
| 2007 |
Sohn KA, Xing EP. Spectrum: joint Bayesian inference of population structure and recombination events. Bioinformatics (Oxford, England). 23: i479-89. PMID 17646333 DOI: 10.1093/bioinformatics/btm171 |
0.551 |
|
| 2007 |
Xing EP, Jordan MI, Sharan R. Bayesian haplotype inference via the Dirichlet process. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 267-84. PMID 17563311 DOI: 10.1089/Cmb.2006.0102 |
0.373 |
|
| 2007 |
Xing EP, Sohn K. Hidden Markov Dirichlet process: modeling genetic inference in open ancestral space Bayesian Analysis. 2: 501-527. DOI: 10.1214/07-Ba220 |
0.601 |
|
| 2006 |
Lin TH, Myers EW, Xing EP. Interpreting anonymous DNA samples from mass disasters--probabilistic forensic inference using genetic markers. Bioinformatics (Oxford, England). 22: e298-306. PMID 16873485 DOI: 10.1093/Bioinformatics/Btl200 |
0.309 |
|
| 2006 |
Xing EP, Sohn KA, Jordan MI, Teh YW. Bayesian multi-population haplotype inference via a hierarchical dirichlet process mixture Acm International Conference Proceeding Series. 148: 1049-1056. DOI: 10.1145/1143844.1143976 |
0.49 |
|
| 2005 |
Wu W, Dave N, Tseng GC, Richards T, Xing EP, Kaminski N. Comparison of normalization methods for CodeLink Bioarray data. Bmc Bioinformatics. 6: 309. PMID 16381608 DOI: 10.1186/1471-2105-6-309 |
0.3 |
|
| 2004 |
Xing EP, Wu W, Jordan MI, Karp RM. Logos: a modular bayesian model for de novo motif detection. Journal of Bioinformatics and Computational Biology. 2: 127-54. PMID 15272436 DOI: 10.1142/S0219720004000508 |
0.344 |
|
| 2001 |
Xing EP, Wolf DM, Dubchak I, Spengler S, Zorn M, Muchnik I, Kulikowski C. Automatic discovery of sub-molecular sequence domains in multi-aligned sequences: A dynamic programming algorithm for multiple alignment segmentation Journal of Theoretical Biology. 212: 129-139. PMID 11531380 DOI: 10.1006/Jtbi.2001.2319 |
0.321 |
|
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