| Year |
Citation |
Score |
| 2023 |
Lin AT, Hammond-Kaarremaa L, Liu HL, Stantis C, McKechnie I, Pavel M, Pavel SSM, Wyss SSÁ, Sparrow DQ, Carr K, Aninta SG, Perri A, Hartt J, Bergström A, Carmagnini A, ... ... Gopalakrishnan S, et al. The history of Coast Salish "woolly dogs" revealed by ancient genomics and Indigenous Knowledge. Science (New York, N.Y.). 382: 1303-1308. PMID 38096292 DOI: 10.1126/science.adi6549 |
0.337 |
|
| 2023 |
Hernández-Alonso G, Ramos-Madrigal J, van Grouw H, Ciucani MM, Cavill EL, Sinding MS, Gopalakrishnan S, Pacheco G, Gilbert MTP. Redefining the evolutionary history of the rock dove, Columba livia, using whole genome sequences. Molecular Biology and Evolution. PMID 37950889 DOI: 10.1093/molbev/msad243 |
0.4 |
|
| 2023 |
Sandoval-Velasco M, Jagadeesan A, Ramos-Madrigal J, Ávila-Arcos MC, Fortes-Lima CA, Watson J, Johannesdóttir E, Cruz-Dávalos DI, Gopalakrishnan S, Moreno-Mayar JV, Niemann J, Renaud G, Robson Brown KA, Bennett H, Pearson A, et al. The ancestry and geographical origins of St Helena's liberated Africans. American Journal of Human Genetics. 110: 1590-1599. PMID 37683613 DOI: 10.1016/j.ajhg.2023.08.001 |
0.312 |
|
| 2023 |
Sun X, Liu YC, Tiunov MP, Gimranov DO, Zhuang Y, Han Y, Driscoll CA, Pang Y, Li C, Pan Y, Velasco MS, Gopalakrishnan S, Yang RZ, Li BG, Jin K, et al. Ancient DNA reveals genetic admixture in China during tiger evolution. Nature Ecology & Evolution. PMID 37652999 DOI: 10.1038/s41559-023-02185-8 |
0.425 |
|
| 2023 |
Ciucani MM, Ramos-Madrigal J, Hernández-Alonso G, Carmagnini A, Aninta SG, Sun X, Scharff-Olsen CH, Lanigan LT, Fracasso I, Clausen CG, Aspi J, Kojola I, Baltrūnaitė L, Balčiauskas L, Moore J, ... ... Gopalakrishnan S, et al. The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs. Iscience. 26: 107307. PMID 37559898 DOI: 10.1016/j.isci.2023.107307 |
0.413 |
|
| 2023 |
Hernández-Alonso G, Ramos-Madrigal J, Sun X, Scharff-Olsen CH, Sinding MS, Martins NF, Ciucani MM, Mak SST, Lanigan LT, Clausen CG, Bhak J, Jeon S, Kim C, Eo KY, Cho SH, ... ... Gopalakrishnan S, et al. Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing. Ecology and Evolution. 13: e10404. PMID 37546572 DOI: 10.1002/ece3.10404 |
0.433 |
|
| 2023 |
Rodríguez-Varela R, Moore KHS, Ebenesersdóttir SS, Kilinc GM, Kjellström A, Papmehl-Dufay L, Alfsdotter C, Berglund B, Alrawi L, Kashuba N, Sobrado V, Lagerholm VK, Gilbert E, Cavalleri GL, Hovig E, ... ... Gopalakrishnan S, et al. The genetic history of Scandinavia from the Roman Iron Age to the present. Cell. 186: 32-46.e19. PMID 36608656 DOI: 10.1016/j.cell.2022.11.024 |
0.322 |
|
| 2022 |
Gopalakrishnan S, Ebenesersdóttir SS, Lundstrøm IKC, Turner-Walker G, Moore KHS, Luisi P, Margaryan A, Martin MD, Ellegaard MR, Magnússon ÓÞ, Sigurðsson Á, Snorradóttir S, Magnúsdóttir DN, Laffoon JE, van Dorp L, et al. The population genomic legacy of the second plague pandemic. Current Biology : Cb. PMID 36182700 DOI: 10.1016/j.cub.2022.09.023 |
0.426 |
|
| 2022 |
Bergström A, Stanton DWG, Taron UH, Frantz L, Sinding MS, Ersmark E, Pfrengle S, Cassatt-Johnstone M, Lebrasseur O, Girdland-Flink L, Fernandes DM, Ollivier M, Speidel L, Gopalakrishnan S, Westbury MV, et al. Grey wolf genomic history reveals a dual ancestry of dogs. Nature. PMID 35768506 DOI: 10.1038/s41586-022-04824-9 |
0.377 |
|
| 2022 |
Iwanycki Ahlstrand N, Gopalakrishnan S, Vieira FG, Bieker VC, Meudt HM, Dunbar-Co S, Rothfels CJ, Martinez-Swatson KA, Maldonado C, Hassemer G, Shipunov A, Bowers MD, Gardner E, Xu M, Ghorbani A, et al. Travel Tales of a Worldwide Weed: Genomic Signatures of L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes. Frontiers in Plant Science. 13: 838166. PMID 35755675 DOI: 10.3389/fpls.2022.838166 |
0.385 |
|
| 2022 |
Garrett P, Becher H, Gussarova G, dePamphilis CW, Ness RW, Gopalakrishnan S, Twyford AD. Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (, Orobanchaceae). Frontiers in Plant Science. 13: 869583. PMID 35720561 DOI: 10.3389/fpls.2022.869583 |
0.38 |
|
| 2022 |
Ariano B, Mattiangeli V, Breslin EM, Parkinson EW, McLaughlin TR, Thompson JE, Power RK, Stock JT, Mercieca-Spiteri B, Stoddart S, Malone C, Gopalakrishnan S, Cassidy LM, Bradley DG. Ancient Maltese genomes and the genetic geography of Neolithic Europe. Current Biology : Cb. PMID 35588742 DOI: 10.1016/j.cub.2022.04.069 |
0.415 |
|
| 2022 |
Rao WQ, Kalogeropoulos K, Allentoft ME, Gopalakrishnan S, Zhao WN, Workman CT, Knudsen C, Jiménez-Mena B, Seneci L, Mousavi-Derazmahalleh M, Jenkins TP, Rivera-de-Torre E, Liu SQ, Laustsen AH. The rise of genomics in snake venom research: recent advances and future perspectives. Gigascience. 11. PMID 35365832 DOI: 10.1093/gigascience/giac024 |
0.382 |
|
| 2022 |
Lin J, Duchêne D, Carøe C, Smith O, Ciucani MM, Niemann J, Richmond D, Greenwood AD, MacPhee R, Zhang G, Gopalakrishnan S, Gilbert MTP. Probing the genomic limits of de-extinction in the Christmas Island rat. Current Biology : Cb. PMID 35271794 DOI: 10.1016/j.cub.2022.02.027 |
0.363 |
|
| 2021 |
Zou J, Gopalakrishnan S, Parker CC, Nicod J, Mott R, Cai N, Lionikas A, Davies RW, Palmer AA, Flint J. Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility. G3 (Bethesda, Md.). PMID 34791208 DOI: 10.1093/g3journal/jkab394 |
0.3 |
|
| 2021 |
Ciucani MM, Jensen JK, Sinding MS, Smith O, Lucenti SB, Rosengren E, Rook L, Tuveri C, Arca M, Cappellini E, Galaverni M, Randi E, Guo C, Zhang G, Sicheritz-Pontén T, ... ... Gopalakrishnan S, et al. Evolutionary history of the extinct Sardinian dhole. Current Biology : Cb. PMID 34655517 DOI: 10.1016/j.cub.2021.09.059 |
0.394 |
|
| 2021 |
Feuerborn TR, Carmagnini A, Losey RJ, Nomokonova T, Askeyev A, Askeyev I, Askeyev O, Antipina EE, Appelt M, Bachura OP, Beglane F, Bradley DG, Daly KG, Gopalakrishnan S, Murphy Gregersen K, et al. Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34544854 DOI: 10.1073/pnas.2100338118 |
0.303 |
|
| 2021 |
Liu S, Westbury MV, Dussex N, Mitchell KJ, Sinding MS, Heintzman PD, Duchêne DA, Kapp JD, von Seth J, Heiniger H, Sánchez-Barreiro F, Margaryan A, André-Olsen R, De Cahsan B, Meng G, ... ... Gopalakrishnan S, et al. Ancient and modern genomes unravel the evolutionary history of the rhinoceros family. Cell. PMID 34433011 DOI: 10.1016/j.cell.2021.07.032 |
0.394 |
|
| 2021 |
Sánchez-Barreiro F, Gopalakrishnan S, Ramos-Madrigal J, Westbury MV, de Manuel M, Margaryan A, Ciucani MM, Vieira FG, Patramanis Y, Kalthoff DC, Timmons Z, Sicheritz-Pontén T, Dalén L, Ryder OA, Zhang G, et al. Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum). Molecular Ecology. PMID 34176179 DOI: 10.1111/mec.16043 |
0.412 |
|
| 2021 |
Skovrind M, Louis M, Westbury MV, Garilao C, Kaschner K, Castruita JAS, Gopalakrishnan S, Knudsen SW, Haile JS, Dalén L, Meshchersky IG, Shpak OV, Glazov DM, Rozhnov VV, Litovka DI, et al. Circumpolar phylogeography and demographic history of beluga whales reflect past climatic fluctuations. Molecular Ecology. PMID 33825233 DOI: 10.1111/mec.15915 |
0.308 |
|
| 2021 |
Perri AR, Mitchell KJ, Mouton A, Álvarez-Carretero S, Hulme-Beaman A, Haile J, Jamieson A, Meachen J, Lin AT, Schubert BW, Ameen C, Antipina EE, Bover P, Brace S, Carmagnini A, ... ... Gopalakrishnan S, et al. Dire wolves were the last of an ancient New World canid lineage. Nature. PMID 33442059 DOI: 10.1038/s41586-020-03082-x |
0.359 |
|
| 2020 |
Ramos-Madrigal J, Sinding MS, Carøe C, Mak SST, Niemann J, Samaniego Castruita JA, Fedorov S, Kandyba A, Germonpré M, Bocherens H, Feuerborn TR, Pitulko VV, Pavlova EY, Nikolskiy PA, Kasparov AK, ... ... Gopalakrishnan S, et al. Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages. Current Biology : Cb. PMID 33125870 DOI: 10.1016/j.cub.2020.10.002 |
0.356 |
|
| 2020 |
Barnett R, Westbury MV, Sandoval-Velasco M, Vieira FG, Jeon S, Zazula G, Martin MD, Ho SYW, Mather N, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Zepeda-Mendoza ML, Antunes A, Baez AC, et al. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology : Cb. PMID 33065008 DOI: 10.1016/j.cub.2020.09.051 |
0.376 |
|
| 2020 |
Sinding MS, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Pitulko VV, Kuderna L, Feuerborn TR, Frantz LAF, Vieira FG, Niemann J, Samaniego Castruita JA, Carøe C, Andersen-Ranberg EU, Jordan PD, Pavlova EY, et al. Arctic-adapted dogs emerged at the Pleistocene-Holocene transition. Science (New York, N.Y.). 368: 1495-1499. PMID 32587022 DOI: 10.1126/Science.Aaz8599 |
0.417 |
|
| 2020 |
Moodley Y, Westbury MV, Russo IM, Gopalakrishnan S, Rakotoarivelo A, Olsen RA, Prost S, Tunstall T, Ryder OA, Dalén L, Bruford MW. Interspecific gene flow and the evolution of specialisation in black and white rhinoceros. Molecular Biology and Evolution. PMID 32585004 DOI: 10.1093/Molbev/Msaa148 |
0.425 |
|
| 2020 |
Gileta AF, Gao J, Chitre AS, Bimschleger HV, St Pierre CL, Gopalakrishnan S, Palmer AA. Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats. G3 (Bethesda, Md.). PMID 32398234 DOI: 10.1534/G3.120.401325 |
0.37 |
|
| 2020 |
de Manuel M, Barnett R, Sandoval-Velasco M, Yamaguchi N, Garrett Vieira F, Zepeda Mendoza ML, Liu S, Martin MD, Sinding MS, Mak SST, Carøe C, Liu S, Guo C, Zheng J, Zazula G, ... ... Gopalakrishnan S, et al. The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32366643 DOI: 10.1073/Pnas.1919423117 |
0.451 |
|
| 2020 |
Louis M, Skovrind M, Samaniego Castruita JA, Garilao C, Kaschner K, Gopalakrishnan S, Haile JS, Lydersen C, Kovacs KM, Garde E, Heide-Jørgensen MP, Postma L, Ferguson SH, Willerslev E, Lorenzen ED. Influence of past climate change on phylogeography and demographic history of narwhals, . Proceedings. Biological Sciences. 287: 20192964. PMID 32315590 DOI: 10.1098/Rspb.2019.2964 |
0.392 |
|
| 2019 |
Jensen TZT, Niemann J, Iversen KH, Fotakis AK, Gopalakrishnan S, Vågene ÅJ, Pedersen MW, Sinding MS, Ellegaard MR, Allentoft ME, Lanigan LT, Taurozzi AJ, Nielsen SH, Dee MW, Mortensen MN, et al. A 5700 year-old human genome and oral microbiome from chewed birch pitch. Nature Communications. 10: 5520. PMID 31848342 DOI: 10.1038/S41467-019-13549-9 |
0.444 |
|
| 2019 |
Ameen C, Feuerborn TR, Brown SK, Linderholm A, Hulme-Beaman A, Lebrasseur O, Sinding MS, Lounsberry ZT, Lin AT, Appelt M, Bachmann L, Betts M, Britton K, Darwent J, Dietz R, ... ... Gopalakrishnan S, et al. Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic. Proceedings. Biological Sciences. 286: 20191929. PMID 31771471 DOI: 10.1098/Rspb.2019.1929 |
0.369 |
|
| 2019 |
van Dorp L, Gelabert P, Rieux A, de Manuel M, de-Dios T, Gopalakrishnan S, Carøe C, Sandoval-Velasco M, Fregel R, Olalde I, Escosa R, Aranda C, Huijben S, Mueller I, Marquès-Bonet T, et al. Plasmodium vivax Malaria viewed through the lens of an eradicated European strain. Molecular Biology and Evolution. PMID 31697387 DOI: 10.1093/Molbev/Msz264 |
0.4 |
|
| 2019 |
Skovrind M, Castruita JAS, Haile J, Treadaway EC, Gopalakrishnan S, Westbury MV, Heide-Jørgensen MP, Szpak P, Lorenzen ED. Hybridization between two high Arctic cetaceans confirmed by genomic analysis Scientific Reports. 9: 7729. PMID 31221994 DOI: 10.1038/S41598-019-44038-0 |
0.465 |
|
| 2019 |
Schroeder H, Margaryan A, Szmyt M, Theulot B, Włodarczak P, Rasmussen S, Gopalakrishnan S, Szczepanek A, Konopka T, Jensen TZT, Witkowska B, Wilk S, Przybyła MM, Pospieszny Ł, Sjögren KG, et al. Unraveling ancestry, kinship, and violence in a Late Neolithic mass grave. Proceedings of the National Academy of Sciences of the United States of America. PMID 31061125 DOI: 10.1073/Pnas.1820210116 |
0.357 |
|
| 2018 |
Alberdi A, Aizpurua O, Bohmann K, Gopalakrishnan S, Lynggaard C, Nielsen M, Gilbert MTP. Promises and pitfalls of using high-throughput sequencing for diet analysis. Molecular Ecology Resources. PMID 30358108 DOI: 10.1111/1755-0998.12960 |
0.362 |
|
| 2018 |
Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, et al. Interspecific Gene Flow Shaped the Evolution of the Genus Canis. Current Biology : Cb. PMID 30344120 DOI: 10.1016/J.Cub.2018.08.041 |
0.436 |
|
| 2018 |
Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, ... ... Gopalakrishnan S, et al. The evolutionary history of dogs in the Americas. Science (New York, N.Y.). 361: 81-85. PMID 29976825 DOI: 10.1126/Science.Aao4776 |
0.394 |
|
| 2018 |
Ebenesersdóttir SS, Sandoval-Velasco M, Gunnarsdóttir ED, Jagadeesan A, Guðmundsdóttir VB, Thordardóttir EL, Einarsdóttir MS, Moore KHS, Sigurðsson Á, Magnúsdóttir DN, Jónsson H, Snorradóttir S, Hovig E, Møller P, Kockum I, ... ... Gopalakrishnan S, et al. Ancient genomes from Iceland reveal the making of a human population. Science (New York, N.Y.). 360: 1028-1032. PMID 29853688 DOI: 10.1126/Science.Aar2625 |
0.476 |
|
| 2018 |
Bohmann K, Gopalakrishnan S, Nielsen M, Nielsen LDSB, Jones G, Streicker DG, Gilbert MTP. Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure. Molecular Ecology Resources. PMID 29673092 DOI: 10.1111/1755-0998.12891 |
0.359 |
|
| 2018 |
Schroeder H, Sikora M, Gopalakrishnan S, Cassidy LM, Maisano Delser P, Sandoval Velasco M, Schraiber JG, Rasmussen S, Homburger JR, Ávila-Arcos MC, Allentoft ME, Moreno-Mayar JV, Renaud G, Gómez-Carballa A, Laffoon JE, et al. Origins and genetic legacies of the Caribbean Taino. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463742 DOI: 10.1073/Pnas.1716839115 |
0.493 |
|
| 2017 |
Aizpurua O, Budinski I, Georgiakakis P, Gopalakrishnan S, Ibañez C, Mata V, Rebelo H, Russo D, Szodoray-Parádi F, Zhelyazkova V, Zrncic V, Gilbert MTP, Alberdi A. Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: evidence from DNA metabarcoding. Molecular Ecology. PMID 29290102 DOI: 10.1111/Mec.14474 |
0.326 |
|
| 2017 |
Liu YH, Wang L, Xu T, Guo X, Li Y, Yin TT, Yang HC, Yang H, Adeola AC, J Sanke O, O Otecko N, Wang M, Ma Y, S Charles O, S Sinding MH, ... Gopalakrishnan S, et al. Whole-genome sequencing of African dogs provides insights into adaptations against tropical parasites. Molecular Biology and Evolution. PMID 29040727 DOI: 10.1093/Molbev/Msx258 |
0.462 |
|
| 2017 |
Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, et al. Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing. Gigascience. 6: 1-13. PMID 28854615 DOI: 10.1093/Gigascience/Gix049 |
0.36 |
|
| 2017 |
Gopalakrishnan S, Samaniego Castruita JA, Sinding MS, Kuderna LFK, Räikkönen J, Petersen B, Sicheritz-Ponten T, Larson G, Orlando L, Marques-Bonet T, Hansen AJ, Dalén L, Gilbert MTP. The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics. Bmc Genomics. 18: 495. PMID 28662691 DOI: 10.1186/S12864-017-3883-3 |
0.439 |
|
| 2017 |
Carøe C, Gopalakrishnan S, Vinner L, Mak SST, Sinding MHS, Samaniego JA, Wales N, Sicheritz‐Pontén T, Gilbert MTP. Single-tube library preparation for degraded DNA Methods in Ecology and Evolution. 9: 410-419. DOI: 10.1111/2041-210X.12871 |
0.323 |
|
| 2016 |
Ramos-Madrigal J, Smith BD, Moreno-Mayar JV, Gopalakrishnan S, Ross-Ibarra J, Gilbert MT, Wales N. Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication. Current Biology : Cb. PMID 27866890 DOI: 10.1016/J.Cub.2016.09.036 |
0.49 |
|
| 2016 |
Miraldo A, Li S, Borregaard MK, Flórez-Rodríguez A, Gopalakrishnan S, Rizvanovic M, Wang Z, Rahbek C, Marske KA, Nogués-Bravo D. An Anthropocene map of genetic diversity. Science (New York, N.Y.). 353: 1532-1535. PMID 27708102 DOI: 10.1126/Science.Aaf4381 |
0.41 |
|
| 2016 |
Parker CC, Gopalakrishnan S, Carbonetto P, Gonzales NM, Leung E, Park YJ, Aryee E, Davis J, Blizard DA, Ackert-Bicknell CL, Lionikas A, Pritchard JK, Palmer AA. Genome-wide association study of behavioral, physiological and gene expression traits in outbred CFW mice. Nature Genetics. PMID 27376237 DOI: 10.1038/Ng.3609 |
0.369 |
|
| 2015 |
Pallares LF, Carbonetto P, Gopalakrishnan S, Parker CC, Ackert-Bicknell CL, Palmer AA, Tautz D. Mapping of Craniofacial Traits in Outbred Mice Identifies Major Developmental Genes Involved in Shape Determination. Plos Genetics. 11: e1005607. PMID 26523602 DOI: 10.1371/Journal.Pgen.1005607 |
0.383 |
|
| 2013 |
Fitzpatrick CJ, Gopalakrishnan S, Cogan ES, Yager LM, Meyer PJ, Lovic V, Saunders BT, Parker CC, Gonzales NM, Aryee E, Flagel SB, Palmer AA, Robinson TE, Morrow JD. Variation in the form of Pavlovian conditioned approach behavior among outbred male Sprague-Dawley rats from different vendors and colonies: sign-tracking vs. goal-tracking. Plos One. 8: e75042. PMID 24098363 DOI: 10.1371/Journal.Pone.0075042 |
0.305 |
|
| 2010 |
Zawistowski M, Gopalakrishnan S, Ding J, Li Y, Grimm S, Zöllner S. Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes. American Journal of Human Genetics. 87: 604-17. PMID 21070896 DOI: 10.1016/J.Ajhg.2010.10.012 |
0.418 |
|
| 2006 |
Qin ZS, Gopalakrishnan S, Abecasis GR. An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinformatics (Oxford, England). 22: 220-5. PMID 16269414 DOI: 10.1093/Bioinformatics/Bti762 |
0.328 |
|
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