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Anthony Gitter, Ph.D. - Publications

Affiliations: 
2012 Carnegie Mellon University, Pittsburgh, PA 
Area:
Computer Science, Bioinformatics Biology
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Deshpande A, Chu LF, Stewart R, Gitter A. Network inference with Granger causality ensembles on single-cell transcriptomics. Cell Reports. 38: 110333. PMID 35139376 DOI: 10.1016/j.celrep.2022.110333  0.683
2022 Rando HM, MacLean AL, Lee AJ, Lordan R, Ray S, Bansal V, Skelly AN, Sell E, Dziak JJ, Shinholster L, D'Agostino McGowan L, Ben Guebila M, Wellhausen N, Knyazev S, Boca SM, ... ... Gitter A, et al. Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure". Msystems. 7: e0144721. PMID 35076276 DOI: 10.1128/msystems.01447-21  0.414
2021 Rando HM, Wellhausen N, Ghosh S, Lee AJ, Dattoli AA, Hu F, Byrd JB, Rafizadeh DN, Lordan R, Qi Y, Sun Y, Brueffer C, Field JM, Ben Guebila M, Jadavji NM, ... ... Gitter A, et al. Identification and Development of Therapeutics for COVID-19. Msystems. e0023321. PMID 34726496 DOI: 10.1128/mSystems.00233-21  0.497
2021 Rando HM, MacLean AL, Lee AJ, Lordan R, Ray S, Bansal V, Skelly AN, Sell E, Dziak JJ, Shinholster L, D'Agostino McGowan L, Ben Guebila M, Wellhausen N, Knyazev S, Boca SM, ... ... Gitter A, et al. Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure. Msystems. 6: e0009521. PMID 34698547 DOI: 10.1128/mSystems.00095-21  0.476
2021 Rando HM, Wellhausen N, Ghosh S, Lee AJ, Dattoli AA, Hu F, Byrd JB, Rafizadeh DN, Qi Y, Sun Y, Field JM, Guebila MB, Jadavji NM, Lordan R, Skelly AN, ... ... Gitter A, et al. Identification and Development of Therapeutics for COVID-19. Arxiv. PMID 33688554  0.452
2021 Rando HM, MacLean AL, Lee AJ, Ray S, Bansal V, Skelly AN, Sell E, Dziak JJ, Shinholster L, McGowan LD, Guebila MB, Wellhausen N, Knyazev S, Boca SM, Capone S, ... ... Gitter A, et al. Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through analysis of Viral Genomics and Structure. Arxiv. PMID 33594340  0.473
2019 Meyer JG, Liu S, Miller IJ, Coon JJ, Gitter A. Learning Drug Function from Chemical Structure with Convolutional Neural Networks and Random Forests. Journal of Chemical Information and Modeling. PMID 31518132 DOI: 10.1021/Acs.Jcim.9B00236  0.31
2018 Liu S, Alnammi M, Ericksen SS, Voter AF, Ananiev GE, Keck JL, Hoffmann FM, Wildman SA, Gitter A. Practical Model Selection for Prospective Virtual Screening. Journal of Chemical Information and Modeling. PMID 30500183 DOI: 10.1021/Acs.Jcim.8B00363  0.331
2018 Köksal AS, Beck K, Cronin DR, McKenna A, Camp ND, Srivastava S, MacGilvray ME, Bodík R, Wolf-Yadlin A, Fraenkel E, Fisher J, Gitter A. Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data. Cell Reports. 24: 3607-3618. PMID 30257219 DOI: 10.1016/J.Celrep.2018.08.085  0.411
2018 MacGilvray ME, Shishkova E, Chasman D, Place M, Gitter A, Coon JJ, Gasch AP. Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. Plos Computational Biology. 13: e1006088. PMID 29738528 DOI: 10.1371/Journal.Pcbi.1006088  0.42
2018 Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, ... ... Gitter A, et al. Opportunities and obstacles for deep learning in biology and medicine. Journal of the Royal Society, Interface. 15. PMID 29618526 DOI: 10.1098/Rsif.2017.0387  0.519
2017 Sychev ZE, Hu A, DiMaio TA, Gitter A, Camp ND, Noble WS, Wolf-Yadlin A, Lagunoff M. Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism. Plos Pathogens. 13: e1006256. PMID 28257516 DOI: 10.1371/Journal.Ppat.1006256  0.357
2016 Tuncbag N, Gosline SJ, Kedaigle A, Soltis AR, Gitter A, Fraenkel E. Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package. Plos Computational Biology. 12: e1004879. PMID 27096930 DOI: 10.1371/Journal.Pcbi.1004879  0.473
2016 Gitter A, Bar-Joseph Z. The SDREM Method for Reconstructing Signaling and Regulatory Response Networks: Applications for Studying Disease Progression. Methods in Molecular Biology (Clifton, N.J.). 1303: 493-506. PMID 26235087 DOI: 10.1007/978-1-4939-2627-5_30  0.634
2014 Jain S, Gitter A, Bar-Joseph Z. Multitask learning of signaling and regulatory networks with application to studying human response to flu. Plos Computational Biology. 10: e1003943. PMID 25522349 DOI: 10.1371/Journal.Pcbi.1003943  0.622
2013 Gitter A, Bar-Joseph Z. Identifying proteins controlling key disease signaling pathways. Bioinformatics (Oxford, England). 29: i227-36. PMID 23812988 DOI: 10.1093/Bioinformatics/Btt241  0.608
2013 Gitter A, Carmi M, Barkai N, Bar-Joseph Z. Linking the signaling cascades and dynamic regulatory networks controlling stress responses. Genome Research. 23: 365-76. PMID 23064748 DOI: 10.1101/Gr.138628.112  0.663
2012 Navlakha S, Gitter A, Bar-Joseph Z. A network-based approach for predicting missing pathway interactions. Plos Computational Biology. 8: e1002640. PMID 22916002 DOI: 10.1371/Journal.Pcbi.1002640  0.712
2012 Schulz MH, Devanny WE, Gitter A, Zhong S, Ernst J, Bar-Joseph Z. DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data. Bmc Systems Biology. 6: 104. PMID 22897824 DOI: 10.1186/1752-0509-6-104  0.714
2012 Bar-Joseph Z, Gitter A, Simon I. Studying and modelling dynamic biological processes using time-series gene expression data. Nature Reviews. Genetics. 13: 552-64. PMID 22805708 DOI: 10.1038/Nrg3244  0.6
2011 Albert R, DasGupta B, Hegde R, Sivanathan GS, Gitter A, Gürsoy G, Paul P, Sontag E. Computationally efficient measure of topological redundancy of biological and social networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 84: 036117. PMID 22060466 DOI: 10.1103/Physreve.84.036117  0.394
2011 Gitter A, Klein-Seetharaman J, Gupta A, Bar-Joseph Z. Discovering pathways by orienting edges in protein interaction networks. Nucleic Acids Research. 39: e22. PMID 21109539 DOI: 10.1093/Nar/Gkq1207  0.626
2010 Gitter A, Lu Y, Bar-Joseph Z. Computational methods for analyzing dynamic regulatory networks. Methods in Molecular Biology (Clifton, N.J.). 674: 419-41. PMID 20827605 DOI: 10.1007/978-1-60761-854-6_24  0.636
2009 Gitter A, Siegfried Z, Klutstein M, Fornes O, Oliva B, Simon I, Bar-Joseph Z. Backup in gene regulatory networks explains differences between binding and knockout results. Molecular Systems Biology. 5: 276. PMID 19536199 DOI: 10.1038/Msb.2009.33  0.642
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